genome.fa.s8495.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5120959

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352650--1353287	270	2.4	270	87	2	924	35	15	19	28	1.93
1353638--1353685	24	2.0	23	88	4	69	31	41	20	6	1.77
1353958--1354068	35	3.2	35	80	10	111	22	17	9	51	1.73
1354631--1354676	2	23.5	2	95	4	85	47	0	0	52	1.00
1354854--1354907	15	3.7	14	80	11	56	22	5	0	72	1.05
1355094--1355133	2	20.0	2	100	0	80	50	0	0	50	1.00
1357139--1357192	25	2.1	27	82	6	67	74	0	3	22	0.98
1357164--1357204	16	2.6	16	85	14	50	75	0	2	21	0.92
1357358--1357410	28	1.9	27	85	11	72	64	0	3	32	1.12
1357451--1357493	18	2.5	17	85	7	61	67	2	4	25	1.22
1358639--1358983	105	3.3	105	90	3	511	21	18	27	32	1.97
1359838--1359966	36	3.6	36	86	5	172	41	13	17	27	1.87
1360915--1360958	22	2.0	22	91	8	72	27	11	22	38	1.88
1361539--1361588	22	2.2	23	85	3	66	0	14	6	80	0.90
1361555--1361598	7	5.6	8	86	7	56	0	6	4	88	0.62
1361554--1361608	24	2.2	25	80	3	67	0	12	5	81	0.84
1362756--1362801	8	6.0	8	87	5	60	58	13	17	10	1.62
1362756--1362794	14	2.6	15	84	12	53	61	12	15	10	1.56
1362756--1362801	15	3.1	14	87	9	56	58	13	17	10	1.62
1365768--1365857	45	2.0	45	80	6	103	58	2	6	32	1.36
1365879--1365914	18	2.1	18	89	5	56	66	2	5	25	1.27
1371689--1371728	21	1.9	21	89	0	62	20	20	10	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375767--1376355	294	2.0	295	98	0	1153	36	18	18	27	1.94
1382500--1382604	35	3.0	34	81	10	115	24	18	9	47	1.78
1382479--1382601	35	3.5	33	77	10	113	25	20	9	44	1.82
1383440--1383512	13	5.8	12	74	18	60	20	5	0	73	1.02
1383440--1383520	18	4.4	18	79	13	85	19	6	0	74	1.03
1383440--1383519	23	3.5	22	81	14	92	20	6	0	73	1.04
1383444--1383503	32	1.9	31	89	3	93	20	5	0	75	0.99
1383442--1383521	19	4.4	17	81	13	63	20	6	0	73	1.04
1383441--1383519	12	6.9	11	72	25	58	20	6	0	73	1.05
1385111--1385150	12	3.4	12	86	6	64	40	10	5	45	1.60
1385113--1385149	11	3.3	11	85	7	56	43	8	5	43	1.57
1385104--1385149	23	2.0	23	95	0	83	45	8	6	39	1.61
1391112--1391140	14	2.1	14	100	0	58	27	17	0	55	1.42
1392638--1392697	26	2.3	26	97	0	111	18	8	23	50	1.74
1394873--1394951	21	3.8	21	83	6	90	16	20	27	35	1.94
1395091--1395171	21	3.8	21	83	3	99	17	19	27	35	1.94
1394749--1395186	218	2.0	218	98	0	849	23	18	24	33	1.97
1397429--1397485	23	2.5	23	88	0	87	19	28	22	29	1.98
1399353--1399385	17	1.9	17	88	11	50	33	0	0	66	0.92
1401866--1401895	2	15.5	2	93	6	53	53	0	0	46	1.00
1402678--1402724	23	2.0	23	95	0	85	34	14	8	42	1.77
1403242--1403278	18	2.1	18	94	0	65	21	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405425--1405469	2	22.5	2	100	0	90	48	0	0	51	1.00
1406511--1406611	23	4.3	24	82	6	88	36	24	21	16	1.94
1406537--1406646	23	4.8	23	80	2	114	33	23	25	17	1.96
1406513--1406616	46	2.2	46	81	11	115	36	25	22	16	1.94
1406728--1406842	45	2.6	45	90	0	176	34	21	9	33	1.86
1414558--1414604	19	2.6	18	80	9	60	42	2	2	53	1.25
1415928--1415958	8	3.9	8	100	0	62	9	0	12	77	0.99
1415926--1415973	14	3.3	14	82	8	51	8	2	10	79	1.02
1415996--1416076	22	3.6	22	73	9	74	13	11	1	74	1.14
1415996--1416062	21	3.1	21	83	10	73	11	11	1	74	1.14
1415997--1416075	23	3.5	23	85	11	94	13	11	1	73	1.16
1418827--1418870	22	2.0	22	95	0	79	29	22	29	18	1.97
1419177--1419231	24	2.3	24	93	0	92	23	18	32	25	1.97
1419942--1420137	95	2.1	94	83	5	252	32	16	16	33	1.92
1421476--1421592	36	3.2	36	93	1	198	30	19	11	38	1.87
1421505--1421782	101	2.7	101	90	0	421	28	19	11	41	1.85
1421605--1421695	36	2.5	37	71	3	87	31	18	12	37	1.88
1421727--1421815	33	2.6	33	85	5	115	23	19	13	43	1.86
1421720--1421815	36	2.8	35	84	4	124	25	18	12	43	1.85
1421615--1421990	134	2.8	135	88	3	540	30	19	10	39	1.86
1421868--1421964	36	2.7	36	88	0	140	29	18	10	41	1.84
1421940--1422018	27	2.8	29	77	12	92	32	20	16	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1423592--1423687	15	6.6	14	70	13	61	19	4	2	73	1.09
1423603--1423653	16	2.9	18	75	19	63	15	5	0	78	0.93
1423788--1423835	13	3.4	14	78	21	55	10	8	0	81	0.88
1423803--1423867	23	2.8	23	88	9	89	13	9	0	76	1.00
1423790--1423871	31	2.7	30	80	14	89	14	8	0	76	1.00
1424650--1424695	24	1.9	24	90	0	74	34	23	23	17	1.96
1424691--1424778	23	3.8	23	81	0	95	34	22	25	18	1.96
1424663--1424778	46	2.5	46	79	9	121	34	24	24	17	1.96
1424883--1424970	45	2.0	45	86	0	122	32	22	10	34	1.88
1424897--1424984	45	2.0	45	81	0	104	35	22	9	32	1.86
1431635--1432034	200	2.0	203	96	2	743	31	24	15	28	1.96
1433600--1433725	39	3.2	39	82	2	146	30	18	28	22	1.97
1433819--1433970	63	2.4	66	77	13	167	42	10	21	25	1.85
1433819--1433989	63	2.8	60	76	12	166	39	12	23	24	1.89
1436816--1436858	23	1.9	21	81	13	50	34	13	18	32	1.90
1438120--1438174	24	2.3	24	70	14	60	7	14	10	67	1.41
1443516--1443595	35	2.3	35	80	2	88	31	15	37	16	1.89
1443621--1443664	12	3.6	12	90	3	61	20	45	20	13	1.85
1443682--1443775	13	6.9	15	67	20	55	50	0	0	50	1.00
1443773--1443803	12	2.6	12	94	0	53	22	48	19	9	1.78
1444273--1444486	53	4.0	53	91	0	338	35	17	16	31	1.92
1445157--1445208	22	2.4	22	96	0	95	26	17	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447335--1447372	20	1.9	20	88	0	58	21	26	10	42	1.85
1455346--1455388	20	2.2	20	100	0	86	23	30	4	41	1.74
1460565--1460854	131	2.2	130	83	1	375	26	16	30	26	1.97
1460729--1460837	43	2.7	41	77	17	111	23	18	30	27	1.98
1460889--1461065	98	1.8	97	85	6	250	41	14	15	28	1.86
1460995--1461037	21	2.1	20	82	4	50	53	16	13	16	1.73
1461080--1461167	37	2.4	38	84	7	110	36	4	23	35	1.76
1461248--1461343	32	3.0	32	89	0	138	30	27	15	27	1.96
1462390--1462472	22	3.6	24	78	19	88	3	15	2	78	1.00
1462410--1462483	12	6.5	11	79	13	69	4	13	2	79	0.98
1462395--1462449	12	4.5	12	80	17	60	5	12	3	78	1.06
1462433--1462483	16	3.1	17	83	10	61	1	13	1	82	0.85
1462437--1462483	18	2.7	18	87	6	62	2	14	2	80	0.89
1469572--1469647	23	3.4	23	71	14	68	28	19	23	27	1.98
1469574--1469675	44	2.3	44	89	0	159	27	19	23	29	1.98
1473546--1473767	117	1.9	117	81	3	268	27	14	9	48	1.74
1475613--1475692	29	2.6	32	78	13	103	55	6	13	25	1.62
1475806--1475841	15	2.5	14	90	4	54	75	0	0	25	0.81
1475720--1475962	125	1.9	125	89	1	371	47	13	16	23	1.81
1476794--1476943	56	2.7	56	89	2	223	24	19	11	44	1.83
1480732--1480974	80	3.0	80	78	10	253	39	12	15	32	1.85
1482262--1482305	18	2.4	18	100	0	88	61	25	9	4	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1484937--1484966	14	2.1	14	93	0	51	36	0	0	63	0.95
1484409--1485067	329	2.0	325	92	1	1095	46	4	5	43	1.46
1488975--1489034	21	2.7	23	71	12	61	21	13	30	35	1.92
1490928--1490962	18	1.9	18	88	0	52	28	0	42	28	1.56
1494283--1494425	22	6.7	22	81	7	170	28	27	24	18	1.98
1494264--1494404	40	3.4	40	87	3	174	27	30	23	18	1.98
1497733--1497772	21	1.9	21	85	10	55	37	7	7	47	1.60
1499676--1499777	45	2.3	45	96	0	186	27	15	24	32	1.96
1508079--1508407	96	3.3	98	80	7	331	30	17	12	39	1.86
1508583--1508825	119	2.1	118	87	3	355	38	15	20	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21