genome.fa.s8495.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5120959

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  20  of  21  ( 2505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4808696--4808802	31	3.3	31	64	19	83	26	11	12	50	1.73
4808678--4808803	66	1.9	68	96	3	238	26	12	12	47	1.78
4808891--4808949	31	1.9	31	89	0	91	27	3	16	52	1.60
4810156--4810196	20	2.0	20	100	0	82	43	0	19	36	1.51
4818229--4818292	33	1.9	33	96	0	119	9	6	40	43	1.62
4818321--4818447	40	3.2	40	77	5	130	51	18	7	22	1.70
4822818--4822863	19	2.4	19	82	13	58	43	2	2	52	1.25
4823317--4823353	11	3.5	11	92	3	58	40	0	0	59	0.97
4823422--4823448	14	1.9	14	100	0	54	48	7	0	44	1.31
4832707--4832761	24	2.3	24	83	0	74	40	21	18	20	1.92
4834788--4834867	18	4.5	18	87	1	108	20	23	30	26	1.98
4836773--4836893	63	1.9	63	94	0	215	29	19	22	28	1.98
4839110--4839158	25	1.9	25	87	4	71	30	6	4	59	1.41
4847787--4847824	20	1.9	20	88	0	58	31	21	18	28	1.97
4848704--4848773	18	3.9	18	86	1	97	18	22	32	25	1.97
4849019--4849053	17	2.1	16	89	5	52	40	0	17	42	1.49
4854412--4854639	114	2.0	113	95	4	415	37	6	14	42	1.70
4854953--4855005	21	2.5	21	100	0	106	24	24	3	47	1.68
4855556--4855611	23	2.4	23	96	3	103	32	23	3	41	1.71
4860743--4860836	41	2.3	41	90	0	152	31	19	18	30	1.95
4868910--4868958	21	2.3	21	78	0	53	42	6	12	38	1.67
4870491--4870520	5	5.8	5	92	7	51	40	40	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4871510--4871608	39	2.6	36	77	13	101	35	8	22	34	1.84
4872475--4872516	22	1.9	22	90	0	66	21	9	16	52	1.72
4873012--4873146	20	6.7	20	80	7	121	33	24	17	24	1.96
4873009--4873140	61	2.2	61	87	0	183	35	24	16	23	1.95
4873314--4873357	22	2.0	22	95	0	79	20	45	15	18	1.85
4873600--4873663	20	3.2	20	86	0	83	15	17	21	45	1.85
4874979--4875023	18	2.5	18	85	0	63	26	42	15	15	1.87
4875506--4875572	20	3.4	20	81	2	73	38	23	22	14	1.92
4875561--4875618	14	3.9	14	79	16	71	48	24	17	10	1.78
4875545--4875623	32	2.4	33	95	2	142	46	22	18	11	1.81
4875630--4875722	19	4.8	19	84	4	105	13	22	21	41	1.88
4876081--4876173	42	2.2	42	82	3	116	22	43	12	21	1.87
4877760--4877827	19	3.8	19	85	14	101	47	17	22	13	1.82
4877846--4877941	20	4.8	20	76	5	95	16	19	22	40	1.91
4877834--4877921	40	2.4	36	81	12	99	15	20	22	40	1.90
4877846--4877941	40	2.4	41	80	5	115	16	19	22	40	1.91
4878155--4878226	20	3.5	20	75	3	72	18	18	20	43	1.89
4879047--4879100	24	2.2	24	86	0	72	24	16	18	40	1.90
4879275--4879299	12	2.1	12	100	0	50	72	0	28	0	0.86
4881590--4881681	19	5.4	19	63	24	69	44	18	19	17	1.87
4881591--4881723	66	2.0	66	92	0	221	42	17	21	18	1.89
4881590--4881716	33	3.8	33	82	4	157	44	17	21	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4881716--4881790	19	4.2	19	75	16	70	14	21	21	42	1.88
4881747--4881791	19	2.4	19	96	0	81	13	20	20	46	1.83
4881898--4881934	14	2.6	14	91	0	65	45	24	0	29	1.53
4883328--4883407	42	1.9	42	84	0	106	22	17	38	21	1.93
4885370--4885462	20	5.0	20	69	15	74	46	19	21	12	1.83
4885369--4885490	33	3.4	36	84	8	130	45	18	22	13	1.84
4885418--4885473	14	3.6	14	74	21	58	42	23	25	8	1.82
4885394--4885490	33	2.9	33	92	1	149	44	20	22	12	1.85
4885491--4885535	19	2.4	19	92	0	72	8	15	26	48	1.74
4886090--4886142	20	2.7	20	90	0	79	28	20	26	24	1.99
4886104--4886204	20	5.0	20	80	7	105	24	18	23	32	1.97
4886091--4886225	61	2.2	61	80	2	146	23	20	22	32	1.98
4886275--4886315	21	2.0	21	85	0	55	34	29	17	19	1.94
4887911--4887969	31	1.9	31	92	0	100	40	6	10	42	1.65
4887962--4888111	40	3.8	40	73	14	157	54	13	0	32	1.39
4887999--4888120	26	4.6	26	66	22	74	54	13	0	31	1.40
4888025--4888681	54	12.1	54	76	10	495	52	11	0	35	1.42
4887984--4888582	80	7.4	78	75	16	451	52	12	0	34	1.42
4888240--4888282	22	2.0	22	95	0	77	48	9	0	41	1.35
4888242--4888290	22	2.2	22	85	3	62	53	10	0	36	1.35
4888296--4888344	22	2.2	22	85	3	62	55	12	0	32	1.37
4888299--4888425	32	3.2	39	66	31	97	52	14	0	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888105--4888681	188	3.0	190	86	7	773	52	11	0	35	1.43
4888025--4888636	134	4.5	134	84	7	815	52	12	0	35	1.43
4888419--4888465	22	2.1	22	88	7	69	57	6	0	36	1.24
4888428--4888470	22	2.0	22	95	0	77	53	11	0	34	1.37
4888430--4888478	22	2.2	22	85	3	62	57	12	0	30	1.36
4888433--4888561	40	3.2	40	68	12	120	53	12	0	34	1.39
4888482--4888552	22	3.0	22	80	10	79	50	14	0	35	1.43
4888507--4888559	22	2.5	21	73	11	54	52	11	0	35	1.37
4888562--4888604	22	2.0	22	95	0	77	51	11	0	37	1.39
4888616--4888658	22	2.0	22	100	0	86	51	13	0	34	1.42
4888661--4888804	15	9.5	15	77	13	143	50	2	0	47	1.12
4888614--4888708	22	4.2	22	69	13	77	51	10	0	37	1.37
4891270--4891382	11	9.6	11	71	25	81	25	21	26	26	1.99
4891269--4891382	24	4.8	24	93	4	187	25	21	27	26	1.99
4891281--4891348	13	5.5	13	74	25	76	25	22	29	23	1.99
4891367--4891403	17	2.2	17	100	0	74	27	32	16	24	1.96
4893924--4893956	17	1.9	18	88	11	52	12	9	18	60	1.57
4897792--4897844	28	2.0	28	85	7	74	37	1	0	60	1.08
4917039--4917216	85	2.1	84	87	1	257	30	19	19	30	1.97
4927195--4927232	17	2.1	19	85	9	53	73	5	5	15	1.19
4930915--4930971	29	2.0	29	82	6	71	22	12	10	54	1.68
4930938--4931482	43	12.8	43	72	12	227	25	20	8	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4930961--4931080	41	2.8	43	82	5	154	25	15	5	54	1.61
4931127--4931481	43	8.2	44	77	9	293	24	21	8	45	1.80
4931127--4931481	87	4.1	85	79	10	346	24	21	8	45	1.80
4932278--4932317	16	2.5	15	84	11	53	65	0	15	20	1.28
4932527--4932605	15	5.3	15	75	10	63	59	5	8	26	1.48
4932536--4932606	14	4.8	14	76	8	61	60	5	5	28	1.42
4932536--4932608	15	4.9	15	75	9	69	60	5	5	28	1.42
4932512--4932618	46	2.3	46	87	4	164	57	9	6	26	1.54
4933081--4933114	18	1.9	17	88	5	50	23	0	2	73	0.97
4942726--4942801	24	3.2	24	69	14	66	27	17	14	40	1.88
4944751--4944841	20	4.6	20	74	9	80	37	21	16	24	1.94
4950667--4950695	14	2.0	15	93	6	51	72	0	0	27	0.85
4950919--4951130	41	5.2	41	86	0	253	36	18	15	29	1.92
4951872--4951907	17	2.1	17	89	0	54	66	0	2	30	1.06
4955512--4955564	20	2.7	19	85	5	70	35	16	30	16	1.92
4955973--4956078	56	1.9	54	92	3	176	34	8	17	38	1.81
4956232--4956268	16	2.3	16	95	0	65	43	2	10	43	1.53
4956304--4956693	67	5.8	67	90	0	566	32	16	23	27	1.96
4956814--4956913	45	2.2	45	94	1	173	47	6	22	25	1.74
4957160--4957353	76	2.5	77	89	2	275	23	34	22	19	1.97
4963151--4963190	21	1.9	21	89	0	62	25	35	25	15	1.94
4965114--4965161	17	2.9	17	80	17	57	14	0	27	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4965397--4965468	30	2.3	30	95	4	126	41	2	18	37	1.65
4965793--4965984	78	2.5	77	89	5	275	22	33	24	19	1.97
4966738--4966957	45	4.9	45	88	2	311	35	13	23	27	1.92
4967843--4968284	198	2.2	200	82	3	532	35	21	10	32	1.87
4968926--4968978	20	2.7	19	79	5	61	35	18	30	15	1.92
4969645--4969681	16	2.3	16	95	0	65	43	2	10	43	1.53
4969717--4970121	67	6.0	67	87	0	551	31	15	23	28	1.95
4970227--4970392	45	3.6	45	89	2	242	47	7	21	23	1.75
4970227--4970392	91	1.8	91	90	2	271	47	7	21	23	1.75
4970374--4970595	45	5.0	45	88	2	306	35	13	22	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21