genome.fa.s8495.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5120959

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  4  of  21  ( 2505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695847--695903	23	2.5	23	88	2	80	40	17	5	36	1.72
696312--696358	23	2.0	23	91	0	76	40	21	4	34	1.73
696713--696783	23	3.2	23	84	11	94	38	22	5	33	1.78
696728--696783	22	2.5	23	85	8	71	37	21	5	35	1.76
695665--697421	879	2.0	873	90	6	2754	39	11	7	41	1.69
696141--696957	401	2.0	408	89	6	1268	38	12	7	41	1.72
697175--697243	21	3.3	21	89	4	104	37	23	4	34	1.75
696550--697654	465	2.4	467	88	7	1660	40	11	7	40	1.70
697897--698998	557	2.0	555	96	1	2023	35	16	14	32	1.89
699391--699415	2	12.5	2	100	0	50	48	0	0	52	1.00
701444--701484	20	2.0	20	90	0	64	31	29	21	17	1.96
701506--701550	22	2.0	22	82	4	54	31	31	26	11	1.91
702706--702920	103	2.1	103	98	0	412	26	12	24	36	1.91
702935--703037	46	2.2	46	96	0	188	24	26	22	27	2.00
702935--703053	23	5.3	23	81	2	134	24	24	21	29	1.99
706853--706897	22	2.0	22	82	4	54	31	31	26	11	1.91
708286--708393	46	2.3	46	95	0	189	23	25	24	27	2.00
708286--708393	23	4.7	23	82	0	135	23	25	24	27	2.00
709117--709255	64	2.2	64	84	0	179	33	10	23	32	1.89
718584--718721	60	2.3	61	85	6	183	14	25	36	23	1.93
718875--718953	27	3.0	27	71	14	76	40	0	1	58	1.06
720688--720788	42	2.4	41	83	3	121	21	32	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720768--720838	21	3.4	21	86	7	108	18	30	25	25	1.98
721392--721430	19	2.1	19	90	0	60	41	5	10	43	1.61
722746--722823	23	3.4	22	71	15	68	29	28	24	17	1.98
722786--722831	23	2.0	23	83	8	58	32	28	23	15	1.95
722945--723005	24	2.5	24	100	0	122	27	26	26	19	1.99
725278--725355	23	3.3	23	66	15	61	30	26	21	20	1.98
725318--725363	23	2.0	23	82	0	56	30	26	23	19	1.98
725597--725683	31	2.8	31	85	5	104	32	24	3	40	1.72
726070--726120	20	2.5	20	100	0	102	21	31	19	27	1.97
727110--727412	138	2.2	138	87	1	412	33	23	18	24	1.97
727295--727523	117	2.0	117	91	1	370	34	19	21	23	1.96
730610--730661	13	4.2	12	79	15	52	46	0	1	51	1.12
737212--737264	27	1.9	28	85	11	74	20	7	7	64	1.44
737823--737853	7	4.3	7	92	8	53	48	0	12	38	1.42
737823--737853	15	2.1	15	94	5	55	48	0	12	38	1.42
740589--740637	26	1.9	26	91	4	82	24	20	22	32	1.98
748322--748360	17	2.3	17	90	0	60	23	5	23	48	1.70
749597--749625	15	1.9	15	100	0	58	62	17	6	13	1.52
753511--753594	41	2.0	41	86	0	114	23	10	11	53	1.69
758762--759450	55	12.5	55	83	2	769	38	17	18	25	1.92
763492--764202	55	12.9	55	83	4	783	37	17	18	27	1.93
765182--765208	14	1.9	14	100	0	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768691--769104	55	7.6	54	86	4	512	35	18	18	26	1.95
768700--769104	163	2.5	165	88	2	582	35	19	18	26	1.95
772525--772572	20	2.4	20	96	0	87	41	20	16	20	1.90
778750--779057	153	2.0	154	99	0	609	36	14	8	39	1.77
781039--781246	106	1.9	109	97	2	395	27	24	4	43	1.74
795223--795454	114	2.0	114	92	0	383	31	13	8	46	1.73
800724--801146	139	3.1	139	81	3	435	43	15	14	26	1.85
801392--801461	29	2.4	29	74	9	70	57	7	12	22	1.60
801781--801824	12	3.8	12	81	6	54	70	4	4	20	1.23
801781--801830	23	2.2	23	82	7	57	70	4	6	20	1.25
802570--802607	19	2.0	20	89	5	60	31	26	10	31	1.90
802598--802662	30	2.2	30	100	0	130	33	29	12	24	1.92
802598--802682	30	2.8	30	91	3	109	31	29	12	25	1.93
802675--802762	40	2.2	40	82	8	99	31	20	12	35	1.90
803857--803915	24	2.4	23	78	10	55	64	0	8	27	1.22
803813--803924	32	3.5	31	77	19	90	66	0	8	25	1.19
805145--805233	13	7.5	13	72	22	63	64	0	0	35	0.94
805143--805247	17	6.0	18	78	13	105	63	0	0	35	1.01
805139--805235	28	3.4	31	76	18	95	63	0	0	36	0.94
805139--805228	10	9.0	11	75	15	63	63	0	0	36	0.95
805233--805288	26	2.2	26	90	3	87	50	8	3	37	1.51
805305--805486	34	5.1	35	77	11	165	41	9	6	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805312--805486	35	4.9	36	80	10	155	41	9	5	43	1.61
805466--805506	21	1.9	22	90	5	66	39	9	4	46	1.58
816344--816404	30	2.0	30	90	6	97	27	19	22	29	1.98
821511--821571	30	2.0	30	90	0	95	21	16	27	34	1.95
821856--821935	3	26.7	3	92	0	133	62	0	2	35	1.09
824473--824721	108	2.3	108	82	0	282	38	10	12	37	1.78
825450--825738	100	2.9	100	91	0	443	32	12	11	43	1.77
825656--825889	76	3.1	76	86	1	362	30	13	11	44	1.78
825732--826063	175	1.9	174	86	1	477	32	13	9	43	1.76
825807--825988	100	1.8	99	91	1	301	30	12	10	45	1.77
825907--826139	75	3.1	76	87	1	344	30	14	10	44	1.79
825556--826202	250	2.6	251	93	1	1093	32	13	10	43	1.79
826057--826344	90	3.0	100	81	11	391	30	13	14	42	1.83
827576--827602	11	2.5	11	100	0	54	18	25	18	37	1.94
828344--828393	18	2.7	19	84	6	66	46	0	12	42	1.41
828322--828431	37	3.0	36	66	10	105	50	0	7	41	1.30
829676--829777	41	2.5	41	84	7	127	17	18	23	40	1.91
830702--830772	20	3.5	20	67	3	61	42	26	19	11	1.85
830698--830799	41	2.5	40	82	7	125	40	25	18	15	1.90
830740--830803	21	3.1	21	72	4	67	39	26	17	17	1.91
834024--834052	3	9.7	3	100	0	58	68	0	0	31	0.89
835650--836126	193	2.5	191	81	4	476	36	12	11	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850686--850751	24	2.8	24	80	0	69	39	13	18	28	1.89
854606--854630	13	1.9	13	100	0	50	48	4	0	48	1.20
854822--854902	24	3.4	24	76	6	74	45	17	16	20	1.85
858376--858422	21	2.2	21	88	0	67	40	21	10	27	1.86
863771--863891	61	2.0	62	85	4	165	28	31	16	23	1.96
864040--864068	15	1.9	15	100	0	58	34	10	27	27	1.89
865648--865697	24	2.1	24	85	7	66	24	2	14	60	1.45
870237--870261	13	1.9	13	100	0	50	40	8	16	36	1.77
872538--872608	21	3.0	25	71	23	71	12	18	0	69	1.20
872538--872628	47	2.0	46	82	6	112	12	20	0	67	1.23
875859--875908	24	2.1	24	85	7	66	24	2	14	60	1.45
876791--876947	32	5.0	32	77	11	135	32	19	18	29	1.95
879178--879240	21	3.0	21	92	0	99	28	26	20	23	1.99
879791--879840	15	3.4	15	71	15	50	50	12	0	38	1.40
879783--879846	29	2.2	29	97	0	119	48	15	0	35	1.46
886237--886299	21	3.0	21	79	9	74	31	26	15	25	1.96
886920--886967	19	2.5	19	86	0	69	27	22	20	29	1.99
901970--902016	10	5.5	8	82	14	51	23	27	34	14	1.94
901980--902013	15	2.1	16	89	10	52	23	29	35	11	1.90
919380--919467	23	3.9	23	78	11	83	23	14	26	35	1.94
923093--923130	17	2.2	17	86	9	51	21	2	5	71	1.19
924036--924069	16	2.1	17	88	5	52	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924462--924529	25	2.8	25	79	2	75	41	13	4	41	1.64
924641--924704	2	32.0	2	100	0	128	50	0	0	50	1.00
924974--925030	20	2.6	21	78	10	62	29	1	3	64	1.20
927701--927731	16	1.9	16	93	0	53	61	6	9	22	1.50
927720--927756	17	2.2	17	100	0	74	67	10	0	21	1.21
927720--927757	9	4.3	9	93	6	69	68	10	0	21	1.19
939940--939991	20	2.7	20	88	5	72	40	1	17	40	1.60
940607--940983	176	2.1	178	87	6	541	41	3	8	46	1.50
943788--943854	31	2.2	31	83	0	89	53	11	5	28	1.61
944152--944320	20	8.4	20	74	7	92	30	24	11	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21