Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008526.1 Hibiscus syriacus cultivar Beakdansim tig00111398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3043201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1346 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2963694--2963895
103
2.0
103
94
0
359
27
12
23
37
1.90
2963919--2963986
23
3.0
23
82
0
82
22
26
25
26
2.00
2967426--2967463
20
1.9
20
94
0
67
26
31
23
18
1.97
2969063--2969260
103
1.9
103
95
0
360
28
11
23
36
1.89
2969284--2969351
23
3.0
23
86
0
82
22
27
23
26
1.99
2973732--2973797
33
2.0
33
100
0
132
33
0
18
48
1.48
2990198--2990237
21
2.0
21
85
5
55
42
5
25
27
1.75
2991950--2992009
31
1.9
32
82
3
77
31
8
5
55
1.51
2992282--2992331
25
1.9
27
88
8
77
50
0
4
46
1.20
2992390--2992440
23
2.2
24
86
10
70
21
17
3
56
1.57
2995709--2995744
18
2.0
18
94
0
63
25
2
27
44
1.68
2995749--2996154
113
3.6
113
94
0
677
30
16
13
39
1.87
2997706--2997741
14
2.6
14
90
0
54
5
16
0
77
0.94
3004795--3004832
16
2.4
16
100
0
76
18
26
7
47
1.76
3005052--3005083
15
2.1
15
94
0
55
46
9
18
25
1.79
3008359--3008410
20
2.5
22
81
12
65
65
1
3
28
1.21
3010060--3010094
3
12.0
3
93
6
63
0
0
34
65
0.93
3015748--3015841
2
47.0
2
100
0
188
50
0
0
50
1.00
3017610--3018100
136
3.6
135
91
1
779
24
22
18
34
1.96
3019061--3019118
26
2.3
25
84
3
80
6
15
0
77
0.97
3019067--3019104
14
2.5
16
83
12
53
5
13
0
81
0.85
3019061--3019118
13
4.5
13
77
12
66
6
15
0
77
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3031125--3031211
2
44.0
2
97
2
167
50
0
0
49
1.00
3032966--3033452
133
3.6
135
89
3
725
24
22
18
34
1.96
3034404--3034450
13
3.7
13
81
16
62
4
12
0
82
0.80
3034397--3034452
25
2.3
24
84
3
76
7
16
0
76
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!