genome.fa.s8526.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008526.1 Hibiscus syriacus cultivar Beakdansim tig00111398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3043201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379983--380030	23	2.1	23	92	0	78	35	8	18	37	1.81
380462--380918	182	2.5	182	91	0	725	27	15	13	43	1.85
380788--381591	112	7.1	112	93	1	1320	24	14	14	46	1.82
384986--385022	17	2.1	18	90	5	58	51	0	0	48	1.00
384958--384992	2	17.5	2	100	0	70	51	0	0	48	1.00
388546--388600	28	1.9	29	85	3	76	58	7	3	30	1.43
394890--394921	15	2.1	15	94	0	55	46	25	15	12	1.81
395770--395836	33	2.0	33	94	5	118	23	14	10	50	1.74
397651--397720	34	2.0	35	94	2	124	51	14	10	24	1.72
403272--403445	60	2.9	59	77	7	188	39	6	21	32	1.80
405055--405113	29	2.0	29	100	0	118	23	13	13	49	1.78
409735--409793	29	2.0	29	100	0	118	23	13	13	49	1.78
420944--421392	229	2.0	227	94	0	790	45	8	7	39	1.61
421458--421507	20	2.5	20	81	12	75	52	10	16	22	1.73
421625--421671	20	2.4	19	79	10	58	55	8	17	19	1.67
423979--424043	32	2.0	33	84	3	87	29	1	46	23	1.61
425833--425871	19	2.1	19	95	0	69	33	2	10	53	1.48
425957--426974	198	5.1	198	94	1	1812	36	14	15	33	1.88
425957--426974	398	2.6	397	98	0	1954	36	14	15	33	1.88
428433--428494	18	3.4	18	88	0	88	38	6	33	20	1.79
428433--428494	6	10.3	6	83	0	61	38	6	33	20	1.79
428448--428498	3	17.0	3	83	0	66	37	3	33	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428436--428498	12	5.2	12	90	0	81	36	6	33	23	1.80
429862--430900	183	5.7	184	96	3	1914	35	15	15	33	1.89
429862--430900	365	2.8	367	97	2	1928	35	15	15	33	1.89
433451--433512	22	2.8	22	90	2	88	37	6	19	37	1.78
433451--433522	23	3.2	22	88	4	90	36	5	19	38	1.75
433876--433938	23	2.7	23	90	0	90	36	6	19	38	1.77
433876--433948	23	3.2	23	86	3	85	35	5	19	39	1.75
437274--437326	24	2.2	24	86	0	70	9	16	22	50	1.74
440293--440343	24	2.2	23	85	3	66	39	15	5	39	1.72
440936--440995	32	1.9	30	83	12	77	50	1	0	48	1.11
440920--441015	48	2.0	50	87	4	142	50	1	1	47	1.15
440924--441029	48	2.3	43	75	17	104	47	0	1	50	1.18
441026--441108	28	3.0	28	74	12	80	51	0	1	46	1.08
441048--441102	27	2.1	26	83	10	67	47	0	1	50	1.11
441074--441132	23	2.6	22	82	10	66	47	1	0	50	1.11
441459--441517	30	2.0	30	100	0	118	33	16	6	42	1.75
441447--441512	15	4.4	15	86	0	96	37	16	6	39	1.74
441857--441900	23	1.9	23	86	9	63	50	0	9	40	1.34
445246--445303	16	3.6	16	92	0	89	53	24	13	8	1.68
446371--446427	15	4.1	14	80	17	66	57	22	12	7	1.58
446351--446423	25	3.0	25	86	7	96	58	19	10	10	1.61
447000--447032	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450007--450108	36	3.0	35	90	9	160	34	8	5	50	1.57
453553--453626	35	2.1	36	82	12	91	47	1	4	47	1.29
453766--453803	20	1.9	20	88	0	58	21	26	10	42	1.85
470004--470038	18	1.9	18	94	0	61	60	11	2	25	1.45
473327--473494	2	90.5	2	65	24	66	52	4	1	40	1.33
473332--473481	5	29.6	5	69	21	82	52	4	2	40	1.33
473407--473481	12	6.4	12	84	9	84	52	1	1	45	1.17
473403--473476	7	11.0	7	75	18	77	51	1	1	45	1.18
475120--475155	18	2.0	18	88	0	54	44	0	8	47	1.33
478217--478340	62	2.0	62	100	0	248	37	11	16	35	1.84
484849--484912	21	3.1	20	86	2	83	34	31	10	23	1.89
494001--494045	23	2.0	23	95	0	81	24	28	33	13	1.93
495166--495249	36	2.3	35	82	10	96	45	2	0	52	1.13
504124--504168	21	2.1	21	87	0	63	31	28	24	15	1.96
505447--505483	18	2.1	17	90	5	56	16	13	35	35	1.88
505348--505578	121	1.9	121	96	0	426	25	12	25	36	1.92
505592--505672	23	3.5	23	84	0	108	20	19	24	34	1.96
505592--505688	23	4.2	23	85	2	106	20	17	24	37	1.94
515182--515242	21	3.2	21	65	29	55	34	4	18	42	1.71
515174--515295	35	3.4	36	85	6	167	33	4	18	43	1.71
515703--515735	16	2.1	16	94	0	57	33	6	27	33	1.81
519808--519871	21	3.4	20	66	29	59	31	4	18	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519800--519921	35	3.4	36	87	6	176	32	4	18	43	1.72
521341--521418	41	2.0	40	84	5	104	37	21	3	37	1.72
523049--523092	17	2.4	19	81	7	56	61	2	2	34	1.21
523176--523204	5	5.8	5	100	0	58	41	0	0	58	0.98
527062--527093	2	16.0	2	100	0	64	50	0	0	50	1.00
529491--529516	3	8.7	3	100	0	52	0	30	0	69	0.89
535099--535144	23	2.0	24	82	4	58	50	2	2	45	1.26
541129--541166	3	13.0	3	84	15	53	68	0	0	31	0.90
542675--542709	16	2.1	17	89	5	54	68	0	0	31	0.90
542700--542748	17	2.9	17	76	11	55	42	2	0	55	1.11
547638--547679	20	2.1	20	90	0	66	23	2	21	52	1.59
550718--550797	17	4.8	17	69	15	60	45	3	0	51	1.19
550719--550795	34	2.3	33	76	12	77	44	3	0	51	1.19
550971--551008	19	2.1	19	90	5	60	57	2	2	36	1.26
551869--551919	19	2.7	18	79	8	66	0	25	5	68	1.12
552321--552421	3	33.7	3	91	0	166	65	0	1	31	1.10
554580--554657	31	2.5	31	93	4	131	34	1	30	33	1.66
555564--555654	32	2.8	33	78	6	98	28	18	17	35	1.94
563734--563774	18	2.3	18	95	0	73	34	0	0	65	0.93
567631--567662	15	2.1	15	94	0	55	78	3	0	18	0.89
569379--569403	12	2.1	12	100	0	50	44	0	0	56	0.99
570178--570235	30	1.9	30	85	0	80	34	3	3	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578646--578818	93	1.9	92	97	1	328	41	12	25	21	1.87
580268--580370	37	2.8	37	92	1	163	18	18	18	44	1.87
580543--580661	52	2.3	51	81	11	136	49	0	0	48	1.12
580573--580681	31	3.6	31	72	17	88	47	0	0	50	1.13
580643--580689	24	2.0	23	83	4	58	40	0	2	57	1.11
580629--580731	29	3.5	28	75	18	86	42	0	1	54	1.18
580895--580963	20	3.5	20	94	2	122	36	13	10	40	1.78
580895--580972	40	2.0	39	89	2	120	35	14	8	41	1.77
580946--581027	15	5.5	15	82	2	103	35	17	7	40	1.77
580946--581027	30	2.8	30	88	1	121	35	17	7	40	1.77
580946--581031	45	1.9	44	90	2	136	33	16	6	43	1.75
589588--589621	16	2.1	16	94	0	59	32	8	26	32	1.87
598391--598436	22	2.1	22	84	4	58	52	8	0	39	1.33
600501--600529	13	2.1	14	93	6	51	44	0	0	55	0.99
601878--601924	21	2.2	21	85	7	60	63	6	0	29	1.19
602319--602349	5	6.2	5	100	0	62	80	0	0	19	0.71
618844--618892	20	2.5	20	96	0	89	67	4	2	26	1.19
626930--627013	27	3.1	26	74	6	78	33	13	34	19	1.90
628131--628201	24	3.0	24	85	4	81	52	18	19	9	1.73
631758--631810	27	2.0	27	88	0	79	39	18	7	33	1.79
632537--632569	6	5.5	6	92	0	57	0	51	0	48	1.00
637995--638022	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638013--638254	132	1.8	134	93	3	425	30	10	18	40	1.85
640148--640190	20	2.1	21	82	4	52	37	2	2	58	1.24
640148--640191	21	2.1	21	83	8	54	36	2	2	59	1.23
661876--661910	18	1.9	18	94	0	61	42	0	2	54	1.15
662022--662087	23	2.8	22	79	9	60	39	6	3	51	1.42
662319--662387	14	5.1	13	72	20	52	33	0	1	65	1.02
662349--662410	27	2.2	28	83	8	74	30	0	4	64	1.14
663009--663047	20	2.0	20	85	5	53	28	10	5	56	1.54
663282--663369	2	47.0	2	71	13	71	51	0	0	48	1.00
663287--663346	19	3.1	18	75	15	66	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12