genome.fa.s8621.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1733548--1733602	23	2.4	23	87	0	74	32	1	0	65	1.03
1734029--1734102	20	3.7	20	74	3	67	43	17	20	18	1.88
1734032--1734121	41	2.2	41	95	0	162	42	16	23	17	1.89
1734046--1734121	21	3.7	21	75	3	82	42	17	23	17	1.89
1734052--1734182	41	3.2	41	80	6	115	38	20	21	19	1.94
1734110--1734224	20	5.7	20	82	6	115	31	26	18	24	1.97
1734107--1734244	41	3.4	41	79	6	154	34	24	17	23	1.96
1734412--1734455	22	2.0	22	95	0	79	20	45	15	18	1.85
1734720--1734757	20	1.9	20	88	0	58	13	15	21	50	1.78
1734895--1734949	25	2.2	24	78	15	58	20	9	18	52	1.71
1736078--1736122	18	2.5	18	88	0	72	26	44	15	13	1.83
1736604--1736649	20	2.3	20	84	0	56	36	23	21	17	1.94
1736615--1736659	20	2.3	19	81	11	56	37	17	24	20	1.93
1736673--1736724	18	2.8	19	85	5	79	46	17	21	15	1.84
1736643--1736724	19	4.6	19	71	17	86	46	19	19	14	1.84
1736731--1736851	20	6.6	19	77	11	101	12	20	23	42	1.86
1736720--1736851	39	3.6	37	71	19	107	12	19	25	43	1.85
1738011--1738046	14	2.6	14	90	0	54	30	0	22	47	1.52
1738154--1738226	19	4.4	16	78	21	64	49	19	19	12	1.79
1738164--1738212	19	2.6	19	96	0	89	51	16	18	14	1.77
1738164--1738219	19	2.9	18	84	5	67	51	16	19	12	1.75
1738250--1738307	20	2.9	20	97	0	107	15	22	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1739364--1739417	24	2.2	24	90	0	81	24	16	20	38	1.92
1739591--1739615	12	2.1	12	100	0	50	72	0	28	0	0.86
1741592--1741722	19	7.7	19	65	23	76	44	19	21	14	1.86
1741592--1741718	33	3.8	33	85	4	184	44	19	21	14	1.87
1741593--1741725	66	2.0	66	94	0	230	42	19	21	16	1.89
1741718--1741760	20	2.2	20	87	4	61	16	18	23	41	1.89
1741746--1741779	14	2.4	14	85	0	50	8	23	20	47	1.78
1741903--1741937	14	2.5	14	90	0	61	45	22	0	31	1.53
1744079--1744115	14	2.6	14	95	0	65	40	24	24	10	1.87
1744055--1744148	47	2.0	48	89	2	145	38	25	24	11	1.89
1744139--1744209	19	3.7	19	90	3	115	46	22	19	11	1.81
1744092--1744204	33	3.2	33	81	7	109	44	24	20	10	1.83
1744030--1744209	20	10.1	19	75	16	120	43	22	22	12	1.86
1744205--1744249	19	2.4	19	88	0	72	6	15	24	53	1.66
1744802--1744854	20	2.7	20	93	0	88	26	20	28	24	1.99
1744863--1744916	20	2.7	20	91	0	90	25	16	24	33	1.96
1744803--1744935	61	2.2	61	79	2	142	22	19	24	33	1.97
1744987--1745027	21	2.0	21	85	0	55	34	31	17	17	1.93
1752358--1752398	17	2.4	17	91	0	64	21	26	36	14	1.93
1752367--1752399	17	1.9	17	100	0	66	18	24	36	21	1.95
1752486--1752526	21	1.9	22	90	5	66	68	12	0	19	1.21
1755124--1755213	17	5.2	17	75	16	69	34	1	0	64	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755152--1755195	3	15.0	3	90	9	65	31	0	0	68	0.90
1755135--1755195	32	1.9	32	86	0	86	32	1	0	65	1.02
1759810--1760592	98	7.8	98	89	3	1073	34	23	20	21	1.97
1760321--1760592	110	2.5	108	87	5	390	34	24	18	22	1.96
1760701--1760888	84	2.3	82	85	2	259	30	25	19	23	1.98
1761110--1761179	3	21.7	3	80	8	59	31	1	0	67	1.00
1761110--1761179	33	2.2	32	84	7	88	31	1	0	67	1.00
1761120--1761179	17	3.8	17	76	17	65	33	1	0	65	1.03
1761107--1761198	20	4.9	20	75	20	74	34	1	0	64	1.01
1761127--1761199	10	7.2	10	80	10	51	36	0	0	63	0.95
1764489--1764520	16	2.0	16	100	0	64	56	0	25	18	1.42
1764881--1764907	2	13.5	2	100	0	54	51	0	0	48	1.00
1775581--1775616	2	18.0	2	100	0	72	50	0	0	50	1.00
1790058--1790215	59	2.7	59	81	4	167	41	3	15	39	1.63
1794535--1795220	156	4.4	158	86	5	843	48	5	17	28	1.69
1794552--1795220	317	2.1	307	83	8	827	48	5	17	28	1.68
1795296--1795326	8	3.9	8	95	0	53	45	12	3	38	1.59
1804959--1804986	2	14.0	2	100	0	56	50	0	50	0	1.00
1805221--1805458	117	2.0	117	94	0	413	34	18	9	38	1.83
1805757--1805787	14	2.2	14	94	0	53	22	0	0	77	0.77
1808064--1808094	11	2.8	11	95	0	53	90	6	0	3	0.55
1813654--1813691	15	2.5	15	86	0	58	26	13	21	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814235--1814310	31	2.4	33	73	6	84	34	14	2	48	1.58
1817668--1817703	18	2.1	18	90	10	58	66	0	19	13	1.24
1817812--1817851	13	3.1	13	85	10	55	75	0	7	17	1.03
1817814--1817880	26	2.6	25	76	4	71	74	1	4	19	1.07
1817880--1817939	17	3.2	17	70	20	57	63	1	5	30	1.25
1817967--1818042	2	38.5	2	90	7	120	51	0	2	46	1.15
1819371--1819577	106	2.0	106	87	1	299	23	17	22	36	1.95
1820190--1820334	67	2.2	65	87	3	200	37	10	21	30	1.87
1820190--1820499	65	4.6	65	73	11	212	40	11	19	29	1.86
1820310--1820826	36	15.0	36	69	17	303	37	12	19	30	1.89
1820256--1820515	138	1.9	138	85	1	360	40	13	19	27	1.88
1820551--1820826	37	7.9	37	70	19	209	36	12	20	30	1.90
1820348--1820826	102	4.7	102	90	1	658	38	12	19	30	1.88
1822289--1822426	69	2.0	69	94	0	240	24	14	23	37	1.92
1822479--1822546	27	2.5	26	82	15	77	2	14	5	76	1.09
1822498--1822534	13	2.8	14	84	12	51	2	16	5	75	1.10
1822517--1822552	18	1.9	18	88	5	54	2	19	2	75	1.06
1822498--1822554	27	2.2	26	81	15	64	1	17	3	77	1.00
1825438--1825496	29	2.1	28	81	15	68	74	5	5	15	1.17
1825680--1825737	10	5.9	9	74	18	53	77	0	1	20	0.86
1825692--1825768	21	3.9	19	75	15	68	72	0	2	24	0.97
1825732--1825800	18	3.6	18	73	17	66	66	1	5	26	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1825710--1825814	41	2.5	40	79	13	122	64	1	4	28	1.24
1825718--1825803	18	4.5	18	70	22	50	65	1	4	29	1.20
1825692--1825804	41	2.9	39	84	10	117	69	0	3	26	1.11
1825838--1825888	25	2.0	27	84	7	70	58	0	3	37	1.16
1829283--1829314	11	2.8	11	95	4	55	43	0	0	56	0.99
1829310--1829380	3	23.7	3	97	0	133	64	0	1	33	1.02
1829691--1830363	113	6.0	113	96	0	1134	30	20	12	36	1.90
1831070--1831097	14	2.0	14	100	0	56	35	35	0	28	1.58
1831164--1831320	52	3.0	52	98	0	305	34	22	17	26	1.95
1831268--1831603	83	4.0	83	97	0	620	33	20	14	30	1.93
1832724--1832806	6	13.5	6	72	22	66	2	16	0	80	0.81
1832724--1832805	5	15.6	5	74	20	62	2	17	0	80	0.82
1832724--1832807	16	4.9	16	83	12	98	2	16	0	80	0.81
1832724--1832805	21	3.9	20	77	12	76	2	17	0	80	0.82
1832724--1832810	32	2.8	30	86	10	113	2	17	0	80	0.81
1845559--1845590	11	2.8	11	95	4	55	43	0	0	56	0.99
1845586--1845662	3	25.7	3	97	0	145	64	0	1	33	1.01
1846358--1846407	15	3.3	15	81	10	57	44	20	8	28	1.79
1849619--1849666	21	2.3	21	88	0	69	20	14	29	35	1.93
1849891--1849932	4	10.5	4	84	0	57	26	2	2	69	1.13
1850077--1850138	21	2.9	22	80	9	83	20	33	19	25	1.96
1851689--1851736	20	2.4	20	96	0	87	16	14	20	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1854290--1854343	24	2.2	24	93	0	90	40	20	18	20	1.91
1854290--1854357	24	2.8	24	84	0	64	38	20	17	23	1.93
1854905--1854942	14	2.7	14	95	0	67	26	39	7	26	1.83
1855112--1855151	16	2.7	15	81	11	55	65	0	5	30	1.14
1855325--1855437	20	5.6	20	72	12	70	31	12	24	30	1.92
1855317--1855455	40	3.5	40	79	2	134	30	12	24	31	1.93
1855361--1855476	20	5.8	20	78	8	101	25	16	27	31	1.96
1856451--1856509	31	1.9	31	89	0	91	44	5	6	44	1.52
1856533--1857073	22	24.6	22	83	5	666	46	9	0	43	1.39
1859770--1860320	275	2.0	276	94	1	971	31	17	14	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11