genome.fa.s8621.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1863557--1863859	162	1.9	161	81	6	371	18	20	16	43	1.88
1863665--1863907	108	2.2	111	81	5	296	18	20	17	43	1.88
1863557--1863859	54	5.6	54	74	9	233	18	20	16	43	1.88
1863705--1863962	108	2.4	106	78	10	263	18	20	17	42	1.90
1863998--1864139	57	2.5	57	92	0	239	19	21	18	41	1.90
1863881--1864360	51	9.1	51	68	13	143	18	21	18	41	1.91
1871945--1871984	20	2.0	20	90	4	64	80	5	2	12	0.98
1871948--1871999	12	4.1	12	80	9	50	82	3	1	11	0.88
1874284--1874319	19	1.9	19	94	5	65	69	0	0	30	0.89
1874227--1874422	110	1.8	106	86	10	281	45	8	10	35	1.68
1875967--1876029	3	21.3	3	80	9	76	65	0	1	33	1.03
1876159--1876700	46	11.8	46	94	1	906	34	18	21	25	1.96
1877479--1877521	19	2.3	19	95	0	77	32	13	13	39	1.85
1877484--1877526	19	2.4	17	82	17	59	37	13	13	34	1.85
1877382--1877585	101	2.0	102	99	0	401	35	12	18	33	1.89
1880474--1880506	16	2.1	16	100	0	66	18	18	18	45	1.86
1881264--1881325	32	1.9	32	93	0	106	17	19	19	43	1.88
1881781--1881810	8	3.6	8	91	8	51	0	20	0	80	0.72
1881781--1881811	9	3.6	9	95	4	55	0	19	0	80	0.71
1884562--1884590	12	2.3	13	94	5	51	55	6	13	24	1.63
1886182--1886237	29	2.0	29	82	10	71	60	1	5	32	1.29
1886779--1886814	19	1.9	19	94	5	65	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886722--1886917	110	1.8	109	85	6	283	43	8	10	37	1.69
1888434--1888491	3	19.3	3	89	7	91	65	0	1	32	1.03
1890508--1890557	25	2.0	25	96	0	91	50	6	12	32	1.64
1893014--1893101	44	2.0	44	93	0	149	32	29	14	22	1.94
1894674--1894719	23	2.1	22	88	8	67	52	0	2	45	1.13
1894669--1894721	23	2.3	24	75	18	58	49	0	1	49	1.12
1897882--1897909	2	14.0	2	100	0	56	50	0	0	50	1.00
1899004--1899059	23	2.4	23	87	0	85	60	16	8	14	1.57
1899406--1899464	30	2.0	30	86	0	82	30	28	11	28	1.92
1901103--1901205	51	2.0	51	100	0	206	34	3	34	26	1.75
1906667--1906715	20	2.4	21	87	12	68	26	4	2	67	1.19
1910042--1910084	17	2.5	17	85	11	52	39	0	0	60	0.97
1916245--1916290	21	2.2	21	96	0	83	17	15	21	45	1.85
1916252--1916296	21	2.1	21	95	0	81	20	13	15	51	1.76
1916299--1916349	20	2.5	20	93	0	84	29	27	21	21	1.99
1916522--1916573	22	2.4	21	78	9	59	26	42	13	17	1.86
1916959--1917065	20	5.4	20	84	3	101	14	16	21	46	1.83
1918789--1918823	18	1.9	18	100	0	70	37	22	0	40	1.55
1919047--1919090	20	2.2	20	87	0	61	20	20	22	36	1.95
1919283--1919330	20	2.4	20	89	0	69	33	27	18	20	1.96
1918824--1919400	308	1.9	302	86	7	813	29	16	19	35	1.93
1919373--1919419	20	2.5	19	86	6	60	21	17	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919911--1919952	21	2.2	19	87	12	59	21	35	19	23	1.96
1919905--1919988	42	2.0	42	83	4	107	21	40	16	21	1.91
1921293--1921354	14	4.3	14	77	6	61	38	0	14	46	1.45
1921469--1921506	20	1.9	20	94	0	67	52	18	21	7	1.70
1921499--1921597	20	5.3	19	69	15	55	24	22	22	31	1.98
1921515--1921648	54	2.5	54	92	0	214	23	23	20	32	1.98
1921623--1921779	54	2.9	54	88	1	226	26	15	21	36	1.94
1921679--1921787	20	5.8	20	76	12	113	25	16	22	35	1.94
1921758--1922027	140	1.9	140	96	0	495	42	14	13	29	1.84
1925253--1925359	20	5.3	20	88	0	142	28	18	24	28	1.98
1925328--1925398	20	3.5	20	88	3	99	25	19	18	36	1.94
1925395--1925435	21	2.0	21	95	0	73	41	17	24	17	1.89
1930244--1930319	22	3.7	21	86	11	104	25	34	25	15	1.95
1931661--1931823	64	2.5	63	84	9	188	28	21	19	31	1.97
1934643--1934813	87	2.0	87	82	2	209	29	14	16	38	1.89
1934677--1934860	87	2.1	87	79	6	194	29	14	19	37	1.90
1939229--1939266	11	3.9	10	80	19	53	78	0	2	18	0.86
1939225--1939266	19	2.3	19	80	19	54	78	0	2	19	0.86
1939663--1939708	22	2.1	21	92	4	74	58	8	8	23	1.56
1941105--1941826	84	8.6	83	76	4	534	26	18	22	32	1.97
1941058--1941850	168	4.7	167	81	2	748	26	18	22	32	1.97
1941030--1941850	252	3.3	251	84	1	928	26	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941852--1942072	121	1.8	121	89	1	345	25	19	24	30	1.98
1942219--1942347	43	3.0	43	79	2	143	20	16	29	33	1.95
1942556--1942692	43	3.2	42	81	8	168	21	13	30	34	1.92
1942047--1942648	301	2.0	303	87	1	859	24	17	24	32	1.97
1942889--1943019	64	2.0	64	91	0	208	31	11	20	36	1.88
1944348--1944391	21	2.1	20	84	16	54	9	9	0	81	0.87
1944730--1944775	20	2.3	20	92	0	74	15	36	17	30	1.91
1946389--1946421	16	2.0	17	94	5	59	24	39	6	30	1.79
1948201--1948246	22	2.1	21	92	4	74	58	8	8	23	1.56
1948336--1948369	17	2.0	17	94	0	59	50	23	8	17	1.74
1956915--1956961	22	2.1	22	88	0	67	40	10	14	34	1.81
1963556--1963580	2	12.5	2	100	0	50	48	0	0	52	1.00
1968035--1968093	31	1.9	31	92	0	100	42	5	8	44	1.57
1968117--1968392	22	12.5	22	92	1	446	48	11	0	39	1.39
1969122--1969175	28	1.9	28	85	7	74	51	5	12	29	1.63
1970699--1970772	20	3.7	18	80	20	76	33	16	21	28	1.95
1972400--1972458	29	2.0	30	83	9	77	28	6	3	61	1.38
1974858--1974942	43	2.0	44	88	2	127	31	11	24	31	1.91
1975191--1975229	14	2.8	14	88	0	60	28	12	5	53	1.60
1978375--1978671	165	1.8	165	88	1	461	38	13	21	26	1.91
1978864--1978936	37	1.9	38	97	2	139	79	0	20	0	0.73
1978866--1978948	20	4.3	19	80	11	98	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1978864--1978948	29	3.0	29	83	11	113	80	0	20	0	0.72
1978864--1978941	8	8.6	8	77	19	66	79	0	20	0	0.73
1983670--1983724	22	2.5	22	87	0	83	34	10	14	40	1.81
1984402--1984574	76	2.3	76	87	2	249	26	21	19	31	1.98
1984590--1985121	113	4.7	113	89	2	730	38	14	18	28	1.90
1984590--1985130	227	2.4	227	86	3	741	38	14	18	28	1.90
1986279--1986311	15	2.2	15	94	0	57	33	18	36	12	1.88
1986366--1986436	31	2.3	31	95	0	124	32	18	21	28	1.96
1986902--1986960	29	2.0	30	83	9	77	28	6	3	61	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!