genome.fa.s8621.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922398--922459	20	3.2	20	88	11	94	83	0	16	0	0.64
922399--922459	28	2.2	28	85	11	81	83	0	16	0	0.64
923601--923823	83	2.7	83	96	0	401	25	12	23	38	1.89
924405--924509	52	2.0	52	98	0	201	36	13	16	34	1.87
924803--925590	113	7.0	113	91	0	1130	37	15	18	29	1.91
925627--925692	36	1.9	35	81	9	82	43	12	22	21	1.85
925498--925734	120	1.9	123	85	6	331	39	14	20	25	1.91
925935--925995	3	20.0	3	83	9	79	34	0	0	65	0.93
927105--927171	29	2.2	32	77	20	81	35	4	5	53	1.46
929676--929705	2	15.0	2	92	0	51	46	0	0	53	1.00
934177--934797	55	11.4	54	80	9	292	28	26	14	30	1.95
934218--934748	55	9.8	54	82	10	633	27	28	14	30	1.95
934218--934743	108	4.9	108	94	1	867	27	27	14	30	1.95
934751--935049	105	2.9	105	79	8	324	22	25	18	34	1.96
934751--935049	51	5.7	52	81	5	311	22	25	18	34	1.96
934750--935049	156	1.9	155	91	4	487	22	25	18	34	1.96
935328--935557	36	6.4	36	88	1	282	20	18	23	37	1.94
935328--935566	108	2.2	108	85	3	318	20	18	23	37	1.94
936762--936997	125	1.9	125	85	0	328	26	24	17	32	1.97
945791--945832	19	2.3	19	87	4	59	61	9	0	28	1.27
947809--947877	30	2.2	30	82	15	86	36	4	17	42	1.69
947818--947877	29	2.0	30	90	6	95	35	5	16	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947957--948004	13	4.1	13	72	25	52	20	33	20	25	1.97
947959--948122	20	8.3	20	77	13	119	23	32	18	25	1.97
948076--948115	12	3.7	12	75	25	52	20	37	17	25	1.94
950582--950789	65	3.2	63	81	10	224	31	24	18	25	1.98
951723--951761	21	1.9	20	84	5	51	58	17	12	10	1.61
955122--955160	14	2.8	14	84	0	51	35	28	12	23	1.91
964326--964388	20	3.6	18	68	16	51	47	0	1	50	1.10
964318--964388	33	2.2	33	82	10	83	47	0	2	49	1.16
964412--964450	19	2.1	19	90	9	62	46	5	5	43	1.48
965617--965684	21	3.4	20	69	19	52	16	22	29	32	1.95
965807--965878	19	3.8	19	94	3	119	47	9	18	25	1.78
971670--971749	34	2.3	36	86	4	110	31	1	23	43	1.62
973197--973241	13	3.5	13	75	25	51	20	4	15	60	1.52
973240--973266	14	1.9	14	100	0	54	33	0	0	66	0.92
973241--973282	20	2.2	19	83	12	50	30	2	4	61	1.29
973388--973421	12	2.9	12	86	4	52	8	8	8	73	1.25
974028--974067	21	1.9	21	100	0	80	25	5	0	70	1.08
979755--979800	22	2.0	23	84	12	60	32	6	0	60	1.22
982045--982097	25	2.1	25	92	0	88	47	15	5	32	1.68
982161--982237	31	2.5	31	78	2	82	28	31	25	14	1.95
983127--983286	29	5.5	28	85	4	178	37	23	4	35	1.75
983141--983285	57	2.5	57	87	5	204	37	22	4	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983337--983373	19	1.9	19	88	0	56	21	27	29	21	1.99
999040--999098	29	2.0	29	96	0	109	25	13	11	49	1.76
1003721--1003779	29	2.0	29	100	0	118	23	13	13	49	1.78
1006052--1006091	20	2.0	20	90	0	62	7	17	22	52	1.69
1006025--1006092	10	7.1	10	71	15	54	10	13	19	57	1.64
1008510--1008537	10	2.8	10	100	0	56	82	0	17	0	0.68
1009173--1009228	21	2.7	20	76	17	60	37	1	1	58	1.19
1010794--1010869	34	2.2	34	83	2	98	46	19	1	32	1.59
1012597--1012678	41	2.0	41	100	0	164	29	12	29	29	1.93
1017214--1017268	21	2.6	21	88	0	83	32	27	16	23	1.96
1019068--1019108	21	1.9	22	90	5	66	21	7	0	70	1.11
1025767--1025795	14	2.1	14	100	0	58	13	6	31	48	1.69
1028450--1028636	3	61.7	3	86	4	259	35	1	1	62	1.12
1041265--1041322	9	6.6	9	82	5	66	86	0	13	0	0.58
1042265--1042976	52	13.7	52	96	0	1268	24	15	22	37	1.93
1043535--1044329	113	6.9	113	91	2	1158	37	14	19	28	1.91
1044626--1044810	3	60.7	3	85	5	246	35	1	1	62	1.12
1055163--1055204	18	2.4	18	92	7	70	73	7	19	0	1.05
1056079--1056267	30	6.4	30	76	10	158	21	11	7	59	1.56
1058047--1058104	31	1.9	31	82	6	75	15	18	6	58	1.59
1059835--1059956	6	20.3	6	69	19	69	77	6	16	0	0.98
1059835--1059912	16	4.9	16	78	15	56	79	3	16	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059835--1059960	25	5.3	24	73	17	102	76	6	16	0	0.97
1059857--1059906	16	3.2	16	88	8	68	82	4	14	0	0.82
1059882--1059914	11	3.0	11	100	0	66	90	0	9	0	0.44
1059838--1059912	15	4.8	16	79	9	66	80	4	16	0	0.87
1059835--1059913	11	6.8	11	74	18	54	79	3	16	0	0.87
1061257--1061335	38	2.1	38	87	0	113	29	15	18	36	1.92
1061368--1061493	42	3.0	41	84	1	144	26	22	23	28	1.99
1061417--1061491	20	3.7	20	76	3	78	26	26	20	26	1.99
1061846--1062202	67	5.4	67	82	5	411	29	21	13	36	1.91
1061846--1062202	133	2.7	134	85	4	474	29	21	13	36	1.91
1062114--1062173	30	2.1	29	82	14	72	31	16	13	38	1.87
1062086--1062346	36	7.4	36	77	11	234	26	20	13	39	1.89
1063076--1063119	16	2.6	18	85	7	65	72	6	18	2	1.17
1063877--1064008	59	2.2	60	87	1	185	18	15	7	58	1.60
1063877--1064027	30	5.1	30	76	7	137	18	13	8	59	1.59
1063877--1064020	60	2.4	58	83	5	180	18	13	7	59	1.58
1066428--1066796	37	9.7	39	77	17	175	45	1	7	45	1.41
1066503--1066795	40	7.8	36	76	13	134	47	2	5	44	1.38
1066520--1066630	34	3.2	33	84	8	123	46	0	9	43	1.41
1066662--1066686	2	12.5	2	100	0	50	52	0	0	48	1.00
1066434--1066816	36	10.2	37	80	12	365	45	1	7	45	1.42
1066434--1066816	74	5.1	74	77	14	360	45	1	7	45	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067918--1067947	15	1.9	16	93	6	53	16	0	0	83	0.65
1068699--1068863	64	2.6	64	77	9	160	30	16	22	30	1.96
1069208--1069244	16	2.2	17	86	13	51	16	43	2	37	1.62
1069891--1069937	21	2.2	21	84	0	58	38	10	44	6	1.65
1070469--1070505	18	2.0	18	89	5	56	35	0	16	48	1.46
1070899--1070962	24	2.9	21	72	17	58	28	18	21	31	1.97
1070869--1070962	45	2.1	44	84	13	122	27	20	23	28	1.99
1077261--1077302	3	14.7	3	81	18	54	30	0	0	69	0.89
1077213--1077328	34	3.7	29	69	22	74	23	5	3	68	1.26
1077277--1077352	23	3.3	23	83	12	86	25	1	2	71	1.07
1077299--1077352	23	2.3	24	93	3	92	22	1	3	72	1.10
1078919--1078951	17	1.9	17	88	11	50	27	6	3	63	1.32
1080020--1080051	15	2.1	15	94	0	55	31	0	3	65	1.08
1080221--1080271	26	2.0	25	85	7	68	54	3	17	23	1.59
1080965--1081009	8	5.5	8	82	10	56	0	4	11	84	0.76
1080965--1081012	25	1.9	25	91	0	78	0	4	12	83	0.79
1080965--1081012	17	2.8	16	81	12	51	0	4	12	83	0.79
1087322--1087356	3	11.7	3	100	0	70	34	31	0	34	1.58
1088275--1088306	13	2.4	14	94	5	57	84	0	15	0	0.63
1088789--1088851	30	2.1	30	82	5	74	17	11	7	63	1.50
1093095--1093143	14	3.6	13	86	13	64	83	2	14	0	0.73
1093100--1093145	20	2.3	20	88	3	67	82	2	15	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093098--1093137	13	2.8	16	88	11	52	85	2	12	0	0.71
1095661--1096144	81	6.0	81	93	0	815	30	20	13	35	1.90
1097587--1098009	131	3.2	129	82	4	512	25	29	18	26	1.98
1100788--1100818	16	1.9	16	93	0	53	29	3	0	67	1.06
1104798--1104864	12	5.4	12	77	18	57	58	4	2	34	1.34
1104799--1104870	25	2.9	25	83	6	85	59	4	2	33	1.31
1106703--1107662	105	9.2	105	95	1	1661	22	22	19	35	1.96
1108457--1109147	54	12.7	54	86	4	784	40	16	11	31	1.84
1108457--1109147	109	6.4	109	86	4	783	40	16	11	31	1.84
1111105--1111154	18	2.8	18	79	11	50	8	18	0	74	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11