genome.fa.s8621.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207442--207509	11	6.3	11	72	8	59	39	1	2	55	1.24
210790--210875	44	2.0	44	83	4	111	32	8	9	50	1.64
215191--215244	20	2.7	20	80	8	65	31	7	5	55	1.51
215716--215744	12	2.4	12	100	0	58	44	0	13	41	1.44
229826--229900	21	3.6	21	80	3	98	38	17	25	18	1.92
229835--229961	41	3.1	41	82	4	132	37	20	21	20	1.94
229889--229982	20	4.7	20	80	7	91	32	25	17	24	1.96
230502--230582	19	4.5	19	73	16	73	46	24	17	11	1.80
230578--230748	19	9.1	19	80	10	172	13	21	21	43	1.86
230578--230748	39	4.6	38	76	13	165	13	21	21	43	1.86
232733--232855	42	2.9	42	80	2	122	22	36	17	22	1.95
232789--232855	21	3.2	21	66	6	55	23	35	20	19	1.95
234230--234265	14	2.6	14	95	0	63	30	0	25	44	1.54
234445--234595	19	8.7	19	63	21	71	15	22	19	41	1.90
234449--234575	33	3.9	32	85	8	184	15	22	18	42	1.89
234442--234570	66	2.0	66	96	0	240	17	22	17	42	1.89
237006--237049	22	2.0	23	86	4	63	31	22	18	27	1.97
238083--238140	20	2.9	20	94	0	98	37	22	22	17	1.93
240186--240252	19	3.5	19	81	4	80	38	23	22	14	1.92
240241--240298	14	3.9	14	79	16	71	50	24	17	8	1.74
240236--240303	32	2.1	33	94	2	120	51	22	17	8	1.72
240310--240425	19	6.6	19	72	17	83	13	21	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240332--240389	14	3.9	14	79	16	71	10	17	24	48	1.78
240315--240405	32	2.8	33	93	3	157	13	18	20	47	1.82
240399--240444	20	2.3	20	85	7	58	15	21	23	39	1.92
240908--240952	18	2.5	18	88	0	72	13	15	44	26	1.83
242265--242302	20	1.9	20	88	0	58	50	21	15	13	1.78
242792--242885	20	4.7	20	80	2	89	23	18	24	34	1.96
242812--242889	41	1.9	41	86	0	111	21	16	21	39	1.92
242772--242886	20	5.7	20	78	5	88	23	17	23	35	1.95
242875--242966	20	4.6	20	76	2	94	17	25	17	40	1.91
242875--242962	41	2.2	40	95	2	158	17	25	15	42	1.88
250562--250656	24	4.0	24	89	5	147	38	21	14	25	1.91
255130--255248	24	5.0	24	86	4	168	39	19	14	26	1.90
256842--256877	17	2.1	18	89	5	56	36	13	2	47	1.58
257721--257746	13	2.0	13	100	0	52	15	23	46	15	1.83
257723--257786	18	3.6	18	84	0	92	14	18	46	20	1.83
262355--262666	159	2.0	160	94	1	547	39	13	14	33	1.85
264721--264749	14	2.0	15	93	6	51	58	0	0	41	0.98
265010--265299	116	2.5	115	75	7	291	26	21	13	38	1.91
265177--265753	283	2.0	282	82	3	705	28	18	17	35	1.94
266116--266201	37	2.3	37	78	7	95	45	17	13	23	1.84
266350--266391	18	2.3	18	87	0	57	23	14	21	40	1.90
267124--267394	54	5.0	55	76	8	227	39	19	9	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267144--267394	109	2.3	106	83	6	308	38	19	8	33	1.82
269501--269571	19	3.7	19	78	12	74	9	18	1	70	1.22
271970--272583	204	3.0	204	95	0	1113	36	16	12	33	1.87
273795--273839	16	2.9	16	78	15	58	53	0	11	35	1.37
276886--276943	15	3.8	15	86	2	71	13	50	6	29	1.68
276886--276943	30	1.9	31	89	3	91	13	50	6	29	1.68
276960--277135	87	2.0	87	91	0	280	22	28	22	26	1.99
284051--284085	14	2.5	14	95	0	61	25	31	20	22	1.98
286244--286316	32	2.3	32	92	0	119	19	21	32	26	1.97
289544--289845	44	6.9	44	87	0	424	26	20	11	41	1.86
289602--289674	25	3.2	25	61	22	59	24	23	12	39	1.89
296139--296403	44	6.0	44	89	0	377	26	24	10	38	1.88
297749--297774	13	2.0	13	100	0	52	46	15	7	30	1.74
306460--306491	8	4.0	8	100	0	64	37	0	0	62	0.95
308471--308556	34	2.6	34	86	1	111	48	13	6	30	1.69
308709--308752	23	2.0	20	83	12	52	47	4	0	47	1.22
308995--309061	25	2.7	25	75	11	66	53	1	0	44	1.09
310704--310799	24	3.8	24	65	32	58	52	0	1	46	1.07
310721--310777	22	2.7	21	79	12	64	50	0	1	47	1.11
312887--312912	13	2.0	13	100	0	52	46	15	7	30	1.74
314671--314756	18	4.9	17	78	10	93	43	10	11	34	1.76
314662--314756	35	2.7	36	83	3	113	43	11	10	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322655--322693	21	2.0	20	85	10	53	41	17	12	28	1.87
329321--329373	19	2.6	19	85	8	61	30	16	24	28	1.97
329415--329456	22	1.9	22	85	0	57	30	11	28	28	1.92
329858--329919	20	3.1	20	75	9	72	40	11	29	19	1.86
329923--330045	26	5.0	26	80	11	136	43	12	17	26	1.85
329987--330058	20	3.4	19	79	18	81	43	9	20	26	1.83
329901--330059	45	3.5	44	78	17	164	44	11	18	25	1.84
336107--336314	95	2.2	95	84	1	283	36	13	24	25	1.93
336654--336730	20	3.5	20	74	19	82	38	11	27	22	1.88
336654--336742	46	1.9	47	95	2	162	40	11	23	24	1.87
343713--343751	21	1.9	20	84	5	51	28	15	20	35	1.93
346697--346721	11	2.3	11	100	0	50	52	16	12	20	1.75
349787--349858	3	25.0	3	91	8	123	69	0	0	30	0.89
349787--349858	17	4.2	17	98	1	135	69	0	0	30	0.89
350978--351115	46	3.0	45	83	6	161	42	12	23	22	1.87
351082--351180	20	4.6	21	84	10	130	41	10	28	20	1.84
351037--351180	65	2.2	66	90	3	220	40	10	26	22	1.86
359605--359750	41	3.6	40	78	13	140	33	17	21	26	1.96
360775--360962	57	3.3	57	99	0	367	29	5	13	51	1.64
362515--362638	60	2.1	58	86	4	176	41	13	20	24	1.88
363940--364287	40	8.8	40	79	8	336	31	15	13	39	1.86
365586--365641	21	2.7	21	88	0	94	37	17	42	1	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365578--365685	42	2.6	42	79	5	103	42	18	37	1	1.61
365617--365688	21	3.4	21	84	0	90	44	19	34	1	1.59
366051--366158	43	2.5	44	79	7	116	31	24	20	24	1.98
366077--366187	43	2.6	43	79	1	123	35	24	16	24	1.95
366107--366230	43	2.9	43	82	2	133	33	24	17	24	1.96
366224--366357	43	3.2	43	87	6	202	25	26	17	31	1.97
366932--366997	2	33.0	2	96	0	123	50	0	1	48	1.10
368668--368753	38	2.2	38	82	8	102	34	16	13	34	1.88
368680--368770	39	2.3	39	86	3	121	29	15	16	38	1.89
368712--369034	41	7.9	41	75	7	194	29	24	17	28	1.97
368718--368953	123	1.9	123	92	0	400	30	24	16	28	1.97
368736--369016	123	2.3	123	83	2	323	29	24	16	28	1.97
372008--372237	43	5.3	43	75	8	178	40	20	17	21	1.91
373665--373994	49	6.8	49	83	5	422	28	18	13	38	1.90
373665--373999	144	2.3	145	84	8	430	28	18	13	39	1.89
373963--374027	33	2.0	33	90	0	103	29	16	13	40	1.88
379915--380398	49	10.0	49	83	6	619	28	19	13	38	1.90
379904--380405	147	3.4	146	88	2	706	28	19	13	38	1.90
382399--382441	3	14.3	3	85	0	59	60	0	4	34	1.17
382605--383051	134	3.3	133	77	4	425	31	15	19	34	1.93
384303--384357	17	3.2	17	94	2	92	10	14	0	74	1.07
384308--384373	17	3.9	17	92	5	84	9	16	0	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390848--390888	21	1.9	22	85	5	57	17	17	7	58	1.60
405791--405855	17	3.6	17	80	11	85	40	38	12	9	1.75
405792--405875	37	2.3	37	100	0	168	39	38	11	10	1.77
405809--405887	20	4.1	20	83	9	119	40	36	10	12	1.77
411335--411385	23	2.2	23	86	6	68	29	27	21	21	1.99
411541--411587	3	16.7	3	79	20	57	72	0	0	27	0.85
411539--411587	17	2.9	18	91	8	77	71	0	0	28	0.86
411859--412173	134	2.4	132	86	2	416	30	17	21	30	1.96
412077--412264	87	2.2	87	87	0	277	31	15	19	33	1.93
411958--412362	221	1.8	221	89	2	634	29	17	20	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11