genome.fa.s8621.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574663--574694	12	2.7	12	100	0	64	18	31	15	34	1.93
577523--577694	20	8.6	20	92	1	274	35	13	31	18	1.90
577735--577788	22	2.5	22	79	5	67	29	14	22	33	1.94
578113--578719	54	11.3	54	87	1	770	29	18	19	32	1.96
582061--582111	20	2.5	20	96	0	93	39	13	21	25	1.90
582792--582850	30	2.0	30	93	0	100	40	5	22	32	1.75
600947--600994	20	2.3	20	75	3	51	29	8	8	54	1.60
602786--602816	16	1.9	16	93	0	53	22	22	12	41	1.88
602839--602876	16	2.4	16	82	13	51	28	21	7	42	1.81
603066--603112	14	3.7	14	71	26	50	44	0	4	51	1.21
603065--603114	23	2.1	24	96	3	93	48	0	4	48	1.20
603595--603642	10	4.8	10	78	0	60	39	29	29	2	1.68
603595--603650	20	2.8	20	88	0	85	37	28	30	3	1.74
605796--605863	13	5.2	13	89	0	100	27	20	16	35	1.94
605835--605999	85	1.9	85	81	7	201	31	20	18	30	1.96
606018--606045	2	14.0	2	100	0	56	50	0	0	50	1.00
607945--607990	2	23.0	2	100	0	92	50	0	0	50	1.00
608602--608631	16	1.9	15	93	6	51	56	0	40	3	1.16
609351--609608	120	2.2	120	94	0	444	50	20	9	19	1.75
609830--609890	24	2.5	24	70	19	56	11	9	36	42	1.74
609844--609921	12	6.5	12	75	11	52	8	12	39	38	1.75
609844--609933	18	5.1	18	75	7	69	10	13	38	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609871--609921	6	8.5	6	84	0	66	3	13	43	39	1.63
610361--610416	18	2.9	19	73	7	60	48	3	37	10	1.56
610691--610737	6	8.3	6	81	13	64	48	2	0	48	1.13
610663--610772	34	3.4	32	72	16	95	50	0	2	46	1.22
610685--610737	18	3.1	17	79	15	65	49	1	0	49	1.12
610644--610737	22	4.1	22	70	25	63	48	2	1	47	1.20
610789--610833	21	2.2	20	88	11	65	44	4	6	44	1.50
610764--610880	61	2.0	61	81	13	145	47	5	5	41	1.47
610790--610882	20	4.6	21	70	20	63	47	4	5	43	1.46
611024--611082	22	2.8	20	78	14	64	44	5	8	42	1.57
611021--611143	20	6.1	21	70	25	79	42	6	8	43	1.60
611190--611214	13	1.9	13	100	0	50	16	0	44	40	1.47
611302--611335	2	16.5	2	87	6	50	44	0	2	52	1.16
611306--611350	20	2.2	21	88	4	65	40	2	6	51	1.41
611341--611411	37	2.0	36	86	5	99	40	11	8	39	1.71
611457--611500	16	2.8	16	92	0	79	34	9	9	47	1.67
611637--611765	2	66.5	2	65	19	51	44	4	2	48	1.36
611688--611740	17	3.3	17	74	15	58	49	1	0	49	1.12
611717--611768	11	4.8	11	84	15	65	38	1	5	53	1.36
611734--611765	13	2.5	13	89	0	55	40	3	6	50	1.43
611719--611791	24	2.9	25	79	8	76	42	5	4	47	1.45
611728--611791	26	2.6	25	85	5	85	43	6	4	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611734--611801	26	2.6	26	70	9	66	42	7	5	44	1.56
611787--611826	18	2.3	18	82	4	55	50	2	5	42	1.37
611807--611837	15	2.1	15	93	0	53	51	0	6	41	1.27
611758--611855	46	2.2	47	80	9	114	45	5	4	44	1.44
617888--617934	19	2.4	19	92	3	76	44	12	17	25	1.84
617897--618416	193	2.7	193	81	6	543	40	12	16	29	1.86
625590--625649	21	2.9	21	97	2	113	36	10	10	43	1.72
625611--627376	200	9.1	200	77	10	1559	39	13	13	33	1.84
625904--626467	179	3.0	176	83	8	619	39	13	13	34	1.84
625606--627053	577	2.5	583	82	6	1721	39	13	13	33	1.84
626906--627250	177	1.9	178	87	2	498	36	14	16	32	1.89
627713--627744	14	2.3	14	94	0	55	40	3	0	56	1.15
630627--630687	31	2.0	31	87	3	88	11	14	11	62	1.55
632350--632422	7	10.3	7	71	14	51	80	5	12	1	0.93
632338--632419	22	3.8	21	73	19	71	80	6	12	1	0.95
632338--632393	20	2.8	19	84	10	67	82	5	10	1	0.91
632351--632418	6	10.8	6	71	20	50	80	5	11	1	0.94
632343--632422	26	3.0	26	76	16	76	80	5	13	1	0.95
632349--632416	20	3.6	18	76	16	59	80	5	11	1	0.94
632338--632421	21	3.9	21	71	22	75	79	5	13	1	0.96
633477--633546	32	2.2	32	92	0	113	28	17	24	30	1.97
633619--633782	60	2.6	62	84	8	201	32	13	14	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634376--634409	3	11.7	3	90	6	52	38	0	0	61	0.96
636903--637398	224	2.2	226	88	2	723	30	14	13	40	1.86
639884--640159	45	6.3	44	75	8	217	26	18	5	50	1.67
639861--640158	89	3.4	88	78	10	290	26	16	5	50	1.67
641696--641746	24	2.0	27	85	11	72	39	3	1	54	1.30
642981--643022	22	2.0	21	90	4	66	40	35	0	23	1.55
643317--643388	29	2.5	30	80	11	87	75	5	11	8	1.19
644515--644562	23	2.1	23	92	0	78	31	6	33	29	1.82
646214--646262	24	2.0	26	84	15	68	32	6	6	55	1.49
646215--646267	23	2.4	22	76	17	56	35	5	5	52	1.49
647461--647502	22	2.0	21	90	4	66	38	35	2	23	1.68
648993--649040	23	2.1	23	92	0	78	31	6	33	29	1.82
651942--651983	22	2.0	21	90	4	66	38	35	2	23	1.68
652528--652583	24	2.4	24	84	3	69	35	21	21	21	1.96
652572--652672	23	4.4	23	72	5	80	36	25	20	16	1.94
659493--659543	24	2.1	24	88	0	75	41	19	17	21	1.91
659673--659714	16	2.7	15	83	16	59	38	16	9	35	1.81
660815--660867	25	2.2	23	83	6	70	16	9	3	69	1.30
660823--660865	12	3.5	12	78	15	52	20	4	4	69	1.25
671638--671664	2	13.5	2	100	0	54	48	0	0	51	1.00
673178--673229	27	2.0	26	84	3	68	26	23	25	25	2.00
681827--682050	43	5.1	43	73	14	154	25	16	6	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681835--682076	88	2.8	88	75	11	223	26	15	6	51	1.67
682764--682836	30	2.4	31	86	2	94	43	2	24	28	1.68
688001--688069	33	2.1	33	100	0	138	20	24	20	34	1.96
688973--689199	113	2.0	113	100	0	454	22	13	22	42	1.87
690321--690605	146	1.9	147	89	2	439	25	15	17	41	1.89
700919--700999	28	2.9	28	75	13	85	41	6	16	35	1.73
701948--702007	29	2.0	31	90	6	97	30	6	28	35	1.83
705768--705843	11	7.3	10	75	17	66	81	1	10	6	0.92
705776--705857	24	3.2	24	80	13	83	81	2	10	4	0.93
705769--705841	37	2.0	37	84	10	96	80	1	10	6	0.95
705772--705845	9	8.2	9	72	15	64	82	1	10	5	0.89
706030--706402	187	2.0	186	98	0	728	31	12	21	33	1.91
710262--710304	18	2.3	18	92	4	68	20	13	9	55	1.66
714412--714569	61	2.5	64	86	8	243	25	21	15	37	1.93
715024--715055	8	4.2	8	84	15	50	37	0	0	62	0.95
719457--719694	120	2.0	117	94	4	415	23	19	21	35	1.96
721219--721564	92	3.8	92	74	7	299	38	9	14	37	1.79
725164--725466	133	2.2	138	82	10	392	41	14	12	31	1.83
725441--725480	12	3.2	12	92	3	62	47	7	7	37	1.60
729464--729496	17	1.9	17	93	0	57	51	0	3	45	1.16
730838--730877	17	2.4	17	95	0	71	15	15	10	60	1.60
735335--735368	15	2.4	14	90	5	50	70	5	14	8	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736239--736917	324	2.1	322	94	3	1197	32	8	14	44	1.75
737973--737997	13	1.9	13	100	0	50	80	12	0	8	0.92
737992--738021	10	2.9	10	95	5	51	86	3	10	0	0.67
737960--738020	14	4.3	13	75	17	50	83	6	4	4	0.90
741260--741421	80	2.0	80	98	0	315	29	19	19	32	1.96
741274--741439	80	2.1	80	89	4	255	31	20	20	27	1.97
750968--751022	18	3.2	17	80	16	69	80	3	7	9	1.02
750937--751007	30	2.4	30	78	19	78	80	5	4	9	1.01
750932--751022	34	2.7	34	80	13	98	79	4	6	9	1.05
751076--751108	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11