genome.fa.s8621.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008621.1 Hibiscus syriacus cultivar Beakdansim tig00111584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991651

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416617--416657	21	2.0	21	100	0	82	24	39	19	17	1.92
424835--425046	76	2.8	75	79	11	234	43	3	8	43	1.53
425060--425096	18	2.2	16	90	9	56	27	2	0	70	1.01
425142--425211	29	2.4	29	80	4	79	20	4	1	74	1.07
426436--426473	15	2.5	15	91	0	58	21	2	0	76	0.91
426443--426481	4	9.8	4	83	10	53	20	2	0	76	0.90
426519--426615	24	4.0	24	67	11	63	21	10	2	65	1.33
428568--428626	23	2.6	21	77	20	57	33	3	10	52	1.52
433073--433135	24	2.7	23	88	9	85	20	25	31	22	1.98
436713--436770	30	1.9	30	96	0	107	31	3	18	46	1.66
436854--436961	8	15.0	8	66	23	53	25	33	14	25	1.95
436861--436960	21	4.8	21	78	11	107	26	33	15	26	1.95
436923--437033	20	5.9	19	69	21	65	28	25	17	28	1.97
436980--437053	20	3.7	21	91	7	109	20	29	20	29	1.97
438461--438489	14	2.0	15	93	6	51	55	0	37	6	1.27
440275--440334	30	2.0	30	96	0	111	30	5	20	45	1.72
440425--440524	21	4.8	21	75	4	94	28	28	17	27	1.97
440447--440519	22	3.5	20	77	15	67	27	27	16	28	1.97
440487--440618	20	6.8	20	74	19	77	27	25	18	29	1.98
440551--440589	12	3.6	12	74	25	50	20	25	17	35	1.95
442034--442062	14	2.0	15	93	6	51	55	0	37	6	1.27
443825--443884	30	2.0	30	96	0	111	30	5	20	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443968--444016	8	6.5	8	79	13	59	22	38	14	24	1.91
443975--444031	21	2.7	21	97	0	105	24	38	14	22	1.91
444450--444478	14	2.0	15	93	6	51	58	0	34	6	1.25
446267--446326	30	2.0	30	96	0	111	30	5	20	45	1.72
446410--446458	8	6.5	8	76	21	52	20	40	14	24	1.89
446414--446473	21	2.9	20	87	7	84	21	41	13	23	1.88
448708--448767	30	2.0	30	96	0	111	30	5	20	45	1.72
448851--448958	8	15.0	8	67	23	53	25	30	16	26	1.97
448858--448957	21	4.8	21	75	4	103	26	30	17	27	1.97
448920--449051	20	6.8	20	75	19	86	26	25	18	29	1.98
448984--449022	12	3.6	12	74	25	50	20	25	17	35	1.95
448977--449071	41	2.3	41	89	1	138	21	29	18	30	1.97
448977--449071	20	4.7	20	90	2	127	21	29	18	30	1.97
450480--450508	14	2.0	15	93	6	51	55	0	37	6	1.27
452294--452353	30	2.0	30	96	0	111	30	5	20	45	1.72
452444--452542	21	4.8	20	77	13	94	26	28	17	28	1.97
452485--452637	20	7.8	20	75	17	83	26	27	17	28	1.98
452563--452657	41	2.3	41	85	5	122	21	30	18	29	1.97
452563--452657	20	4.7	20	88	2	118	21	30	18	29	1.97
459434--459468	2	17.5	2	100	0	70	51	0	0	48	1.00
460842--460874	3	11.0	3	100	0	66	66	0	0	33	0.92
460873--460908	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464726--464756	3	10.7	3	93	6	55	64	0	0	35	0.94
464755--464829	3	25.0	3	100	0	150	33	0	0	66	0.92
466114--466163	23	2.2	23	85	3	66	16	2	6	76	1.08
473083--473157	21	3.5	21	89	7	98	26	25	26	21	1.99
473101--473179	22	3.6	22	83	8	90	22	25	29	22	1.99
473077--473180	21	4.8	21	82	10	95	23	24	29	23	1.99
478307--478342	11	3.4	11	96	3	65	8	25	8	58	1.55
481651--481680	11	2.7	11	94	0	51	46	0	3	50	1.18
482677--482781	37	2.9	36	83	9	115	31	18	11	39	1.86
482697--482781	36	2.3	37	84	6	102	30	21	12	35	1.91
482808--482949	72	2.0	70	82	8	169	36	16	12	34	1.86
482956--483527	66	8.6	65	87	5	679	27	19	13	39	1.89
483279--483529	36	7.5	35	65	21	144	27	21	12	38	1.90
483315--483491	30	5.5	30	67	21	117	26	21	13	38	1.91
484619--484738	60	2.0	61	96	3	226	35	11	10	43	1.75
484900--484946	22	2.1	22	88	0	67	17	0	8	74	1.05
486639--486704	32	2.0	33	97	2	125	31	6	12	50	1.64
486812--486873	23	2.8	22	75	20	58	20	6	4	67	1.32
486827--486872	24	2.0	23	83	12	58	19	6	4	69	1.28
486898--487055	8	16.9	9	67	23	51	22	5	1	71	1.13
486945--487061	9	13.8	8	69	16	58	17	5	0	76	1.02
486936--487051	26	4.6	25	69	19	73	18	6	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486930--486990	30	2.0	30	90	6	95	26	3	0	70	1.02
486869--486999	38	3.5	36	77	15	122	29	2	1	67	1.12
486949--486999	22	2.4	22	83	9	61	23	1	0	74	0.92
490122--490182	16	3.8	16	85	12	81	81	6	11	0	0.85
490116--490185	13	4.9	13	75	23	54	82	5	11	0	0.82
490116--490185	7	9.6	7	71	20	54	82	5	11	0	0.82
490116--490196	22	3.7	21	79	18	78	79	6	14	0	0.92
490117--490186	35	2.0	35	81	13	81	81	5	12	0	0.86
490778--490817	21	1.9	21	90	10	64	37	25	10	27	1.88
491246--491283	18	2.1	18	90	0	58	18	5	36	39	1.73
491835--491956	37	3.3	36	88	3	181	27	20	12	40	1.88
491753--492021	139	2.0	133	82	5	324	29	20	11	37	1.89
491939--492100	63	2.5	66	81	10	192	33	19	9	36	1.85
492439--493403	105	9.4	103	78	9	881	32	24	21	21	1.97
492452--493400	203	4.6	204	81	8	998	33	24	20	21	1.97
492876--493357	108	4.6	107	80	10	466	32	25	20	21	1.97
493813--493906	35	2.6	35	83	11	111	38	14	14	31	1.87
494169--494214	23	2.0	24	83	12	60	19	8	4	67	1.35
494184--494248	24	2.8	22	77	11	58	24	4	4	66	1.30
494301--494410	6	17.7	6	70	20	57	19	4	0	75	1.03
494278--494375	28	3.7	27	75	16	80	25	3	1	70	1.08
494257--494356	38	2.6	38	79	12	114	27	3	1	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494335--494409	21	3.7	20	74	13	57	16	5	1	77	1.02
494348--494438	22	4.2	22	72	17	66	15	8	2	73	1.17
494497--494526	15	2.0	15	93	0	51	23	16	0	60	1.36
494901--494926	2	13.0	2	100	0	52	50	0	0	50	1.00
497777--497883	12	8.9	12	76	11	85	53	17	10	18	1.72
497777--497881	24	4.4	25	73	15	98	53	18	9	19	1.71
497775--497883	48	2.3	48	91	3	175	53	17	10	19	1.72
516490--516573	13	6.2	13	69	16	55	73	4	17	3	1.15
516545--516599	8	6.7	9	80	19	59	72	0	25	1	0.94
516543--516608	28	2.4	26	80	16	71	74	0	22	3	0.96
518710--518756	23	2.0	23	84	8	60	44	6	10	38	1.65
521671--521703	16	2.1	17	88	11	52	21	24	12	42	1.86
522960--522989	11	2.7	11	94	0	51	73	16	3	6	1.18
526621--526669	3	16.7	3	81	12	57	69	0	0	30	0.89
528320--528352	16	2.1	16	88	5	50	48	9	15	27	1.74
529691--530870	590	2.0	591	95	1	2116	35	18	11	34	1.86
535301--535352	22	2.4	22	80	0	68	28	26	21	23	1.99
546999--547208	65	3.3	63	79	11	205	25	19	24	30	1.98
553285--553324	21	1.9	21	85	10	55	35	10	2	52	1.48
555241--555289	19	2.7	17	84	9	53	26	20	28	24	1.99
555314--555375	28	2.2	28	97	0	115	27	19	27	25	1.99
555265--555440	93	1.9	92	86	5	248	27	19	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555342--555498	65	2.4	64	79	10	176	24	18	24	31	1.97
561772--561846	35	2.1	35	90	0	114	37	13	13	36	1.84
562156--562290	59	2.3	58	82	5	164	37	14	16	31	1.88
563255--563307	20	2.7	20	77	8	54	32	13	30	24	1.93
563330--563370	19	2.2	19	90	0	64	39	14	17	29	1.89
563337--563383	22	2.3	19	85	10	58	38	17	14	29	1.89
563763--564325	55	10.3	55	91	0	885	34	11	18	35	1.87
564758--564811	27	2.0	27	92	0	90	25	11	7	55	1.61
569173--569398	54	4.2	54	91	0	353	27	18	20	33	1.96
569643--569682	17	2.4	17	95	4	73	50	5	0	45	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11