genome.fa.s8717.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008717.1 Hibiscus syriacus cultivar Beakdansim tig00111772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3453450

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  3  of  16  ( 1896 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578572--578642	22	3.2	22	76	9	72	46	2	25	25	1.66
578926--588715	4	2441.8	4	82	10	11084	47	24	2	25	1.64
590072--590101	3	10.0	3	100	0	60	33	0	0	66	0.92
594883--595168	154	1.9	155	92	1	486	33	10	8	46	1.69
595532--595577	19	2.3	20	81	7	58	26	30	17	26	1.97
595617--595656	21	1.9	21	89	0	62	12	27	22	37	1.90
595612--595663	21	2.5	20	81	3	59	17	26	23	32	1.96
595653--595705	21	2.5	22	85	8	67	39	22	18	18	1.92
595694--595939	20	12.4	20	91	0	368	24	28	19	26	1.99
596612--596656	23	2.0	23	95	0	81	22	22	22	33	1.97
596853--596889	14	2.6	14	95	4	65	48	21	24	5	1.71
599130--599256	20	6.3	20	93	0	218	34	25	23	16	1.95
600960--601029	21	3.3	21	74	7	70	20	15	38	25	1.92
600948--601040	42	2.2	42	88	0	141	21	15	40	22	1.90
601393--601459	20	3.3	21	85	4	77	38	26	17	16	1.91
601466--601519	19	2.8	19	88	0	72	44	27	18	9	1.80
601541--601574	14	2.4	15	85	14	54	8	14	23	52	1.69
601533--601623	33	2.7	33	84	3	110	12	20	21	45	1.84
601595--601663	20	3.5	20	89	0	111	15	23	24	36	1.94
601798--601877	22	3.6	22	89	0	115	38	25	7	28	1.83
601800--601935	22	6.2	22	83	0	103	38	27	8	25	1.85
602416--602464	18	2.7	18	100	0	98	12	12	46	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603796--603867	20	3.6	20	85	7	110	41	23	20	13	1.88
603869--603921	18	2.9	18	86	5	70	32	16	22	28	1.96
603871--603949	19	4.2	19	90	1	106	21	17	25	35	1.95
603889--603956	19	3.6	19	93	0	100	16	17	27	38	1.91
603981--604049	20	3.5	20	84	7	95	17	21	24	36	1.95
604394--604450	22	2.6	22	82	0	78	21	19	40	19	1.92
604643--604684	20	2.1	20	95	0	75	30	23	21	23	1.99
604719--604771	21	2.5	22	81	6	74	33	18	26	20	1.96
611086--611130	5	8.8	5	81	13	56	4	22	53	20	1.63
611079--611131	17	3.3	17	87	12	85	9	22	49	18	1.76
618346--618499	31	5.0	31	95	1	265	37	22	19	20	1.94
622052--622082	4	7.8	4	100	0	62	77	0	0	22	0.77
622447--622564	29	4.1	29	97	0	218	15	31	36	16	1.90
622557--622720	81	2.0	81	100	0	328	26	17	37	19	1.93
623240--623283	21	2.1	21	91	0	70	29	0	15	54	1.42
623260--623322	28	2.2	30	91	5	103	31	0	11	57	1.34
623743--623787	21	2.2	21	84	4	56	35	0	8	55	1.31
624048--624106	26	2.3	25	75	18	66	47	8	3	40	1.51
626926--626974	22	2.4	19	80	12	53	44	2	4	48	1.33
626987--627413	26	17.2	26	78	14	325	43	2	10	43	1.51
626933--627449	124	4.2	124	96	1	925	43	2	9	44	1.49
626987--627330	150	2.3	146	84	10	414	44	2	10	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626990--627465	14	35.1	14	69	18	162	43	2	9	44	1.48
627673--627705	17	1.9	17	93	0	57	36	6	12	45	1.66
627619--627698	24	3.3	23	71	21	67	38	3	8	48	1.52
629859--629889	15	2.1	14	94	5	53	54	6	0	38	1.26
629864--629910	16	3.0	16	84	9	53	59	10	0	29	1.31
629951--630032	34	2.5	34	83	13	93	48	13	0	37	1.42
630073--630164	46	2.0	48	87	8	136	46	11	0	41	1.41
630073--630177	47	2.2	48	85	10	135	47	12	0	40	1.41
630145--630233	41	2.2	40	78	8	90	46	10	1	42	1.45
630359--630419	21	3.0	20	88	6	88	1	36	0	62	1.05
630424--630469	23	2.0	23	100	0	92	8	39	4	47	1.54
630669--630777	29	3.8	29	92	2	175	22	31	31	15	1.95
630815--630842	13	2.2	13	100	0	56	14	39	14	32	1.86
630785--630896	55	2.0	55	100	0	224	14	35	19	30	1.91
630870--630904	13	2.8	13	95	4	63	14	37	17	31	1.89
632044--632073	10	3.0	10	90	0	51	30	16	0	53	1.44
637641--637686	14	3.2	14	81	6	56	26	36	21	15	1.93
639708--639900	96	2.0	96	85	0	260	26	13	17	41	1.87
641138--641456	158	2.0	153	86	8	444	34	9	9	46	1.69
642188--642238	26	2.0	26	88	0	75	60	5	5	27	1.43
646991--647053	16	4.0	16	83	8	76	66	0	1	31	1.01
646991--647053	31	2.0	31	93	3	108	66	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649332--649372	21	2.0	21	90	0	64	12	4	19	63	1.46
650123--650176	11	4.8	11	81	4	54	11	1	12	74	1.16
650125--650190	34	1.9	34	93	0	114	13	3	12	71	1.26
651238--651314	29	2.7	29	85	0	91	20	5	25	48	1.71
651266--651331	29	2.3	29	84	5	80	18	9	19	53	1.71
651632--651726	35	2.7	35	93	0	154	44	24	0	31	1.54
656877--656969	27	3.5	27	77	2	91	23	17	23	35	1.95
657882--657963	2	41.5	2	83	7	96	46	0	4	48	1.23
658639--658674	18	2.0	18	88	0	54	58	25	8	8	1.55
659673--659698	12	2.2	12	100	0	52	34	0	7	57	1.27
668420--668501	42	2.0	42	92	0	137	21	21	21	34	1.97
668063--668549	251	1.9	251	93	1	841	30	17	18	33	1.94
668739--668859	3	38.7	3	72	18	79	38	0	3	58	1.14
668756--668869	28	3.9	29	78	16	112	39	0	3	57	1.16
668736--668869	15	8.8	15	81	14	141	39	0	2	57	1.14
669797--669826	3	10.3	3	92	7	53	30	0	70	0	0.88
674421--674478	28	2.0	29	83	6	73	31	15	17	36	1.91
674368--674525	85	1.9	85	95	0	289	29	16	22	31	1.96
674505--674548	13	3.4	13	87	0	61	29	20	20	29	1.98
676463--676560	21	4.7	21	98	0	178	24	16	37	21	1.93
676422--676562	63	2.2	63	86	7	198	24	16	34	24	1.95
676642--676699	30	2.0	29	90	10	91	44	17	5	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676642--676701	29	2.0	30	93	6	104	43	16	6	33	1.74
679898--679975	20	3.8	21	88	8	108	30	20	26	21	1.98
680151--680210	30	2.0	30	93	6	104	45	15	6	33	1.72
682256--682321	29	2.2	30	78	2	71	36	7	19	36	1.81
682926--683447	59	8.9	59	74	10	385	37	10	21	30	1.88
682918--683385	118	4.0	116	84	4	532	36	11	21	30	1.88
683234--683364	60	2.2	61	82	10	164	38	12	19	29	1.88
683506--683706	45	4.5	44	90	4	294	39	6	20	32	1.78
683514--683685	91	1.9	90	93	1	299	38	6	20	33	1.80
684102--684141	21	1.9	21	94	0	71	27	20	27	25	1.99
689355--689388	17	1.9	18	88	5	52	50	2	8	38	1.49
693484--693527	19	2.3	19	96	0	79	34	11	31	22	1.90
693711--693803	8	10.8	8	70	18	62	76	0	17	6	0.99
693712--693812	25	4.1	25	73	16	77	77	0	14	7	0.99
693721--693803	15	5.7	14	70	18	55	77	0	16	6	0.97
695087--695908	246	3.3	244	87	2	1112	32	22	20	24	1.98
695087--695908	82	10.0	82	85	1	957	32	22	20	24	1.98
696228--696318	2	45.5	2	82	4	103	45	1	5	48	1.33
697995--698044	21	2.4	21	100	0	100	32	8	16	44	1.76
706030--706071	16	2.6	16	78	14	50	59	9	2	28	1.41
707056--707088	2	16.5	2	100	0	66	51	0	0	48	1.00
715836--716158	100	3.2	100	86	4	422	31	15	9	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716485--717128	139	4.6	139	89	0	941	35	16	20	27	1.94
720784--720954	85	2.0	82	89	7	256	30	2	10	56	1.48
721653--721677	4	6.2	4	100	0	50	52	0	0	48	1.00
727491--727563	27	2.6	28	89	2	103	38	15	23	23	1.92
729665--729795	24	5.7	23	63	20	67	30	1	11	56	1.44
730575--730632	29	2.1	27	83	6	71	25	3	1	68	1.14
733098--733146	17	3.1	16	85	5	64	0	14	53	32	1.41
733385--733414	14	2.1	15	93	6	53	40	10	0	50	1.36
738985--739041	26	2.2	26	100	0	114	29	17	8	43	1.79
757645--757707	27	2.4	26	82	10	74	71	7	12	7	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16