genome.fa.s8824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008824.1 Hibiscus syriacus cultivar Beakdansim tig00111996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4603428

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  1  of  19  ( 2203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1613--1654	21	2.0	21	86	9	59	50	2	11	35	1.52
5421--5477	23	2.7	21	84	10	64	22	33	26	17	1.96
6797--6821	13	1.9	13	100	0	50	44	8	8	40	1.63
7989--8093	6	17.5	6	92	0	165	20	0	45	33	1.57
9536--9603	15	4.6	15	70	15	52	26	2	8	61	1.40
11632--11696	7	9.3	7	84	15	82	70	0	0	29	0.87
11632--11695	3	19.7	3	87	12	83	70	0	0	29	0.88
11718--12019	37	8.3	37	77	16	253	43	8	2	45	1.48
11742--11907	65	2.5	64	85	5	165	40	7	4	46	1.52
11718--12019	76	4.2	73	79	15	281	43	8	2	45	1.48
11818--11871	26	2.1	26	92	0	90	38	7	5	48	1.55
11779--11917	65	2.2	65	94	2	246	40	6	5	48	1.51
11865--12029	36	4.6	35	80	12	174	47	9	1	41	1.44
12456--12946	85	5.8	84	82	5	521	25	19	20	34	1.97
12497--12930	163	2.6	166	85	5	538	24	21	20	33	1.97
14354--14533	95	1.9	95	88	2	272	34	19	14	31	1.92
18435--18480	17	2.6	17	86	3	56	82	2	4	10	0.89
19690--19741	3	17.0	3	88	11	79	67	0	0	32	0.91
19846--20177	37	9.5	35	75	19	252	43	7	3	46	1.49
19835--20097	39	7.4	39	75	20	299	41	6	4	47	1.50
19899--20097	65	3.0	67	96	2	375	41	6	5	47	1.50
19938--20070	28	4.4	28	76	15	140	42	6	4	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20005--20058	26	2.1	26	100	0	108	42	7	3	46	1.49
20034--20212	36	4.9	37	82	8	183	46	8	1	43	1.42
21880--21912	16	2.1	16	94	0	57	33	18	3	45	1.65
33503--33551	23	2.1	23	88	0	71	18	18	12	51	1.76
35692--35742	20	2.5	20	100	0	102	45	11	23	19	1.83
41966--42012	21	2.2	21	100	0	94	31	12	14	40	1.84
42911--42980	12	5.8	12	76	6	61	18	12	17	51	1.76
42874--42978	48	2.2	48	81	6	115	20	16	15	48	1.81
42911--42982	24	3.0	24	72	0	72	19	12	16	51	1.76
45210--45252	17	2.5	17	100	0	86	39	4	25	30	1.76
45298--45358	23	2.7	23	89	0	95	26	27	26	19	1.99
45375--45577	103	2.0	103	96	0	370	36	23	12	27	1.91
48612--48689	24	3.3	24	74	12	72	34	21	20	23	1.97
51420--51458	21	1.9	20	89	5	60	66	0	0	33	0.92
53987--54109	64	1.9	64	81	3	149	19	8	21	49	1.75
54234--54273	16	2.5	16	87	0	53	32	12	7	47	1.69
57211--57266	17	3.2	17	76	14	51	75	0	5	19	1.00
58112--58170	24	2.4	24	80	2	64	64	8	3	23	1.37
59352--59391	20	2.0	20	100	0	80	35	25	10	30	1.88
60490--61028	271	2.0	269	95	0	979	34	19	14	31	1.91
71078--71118	21	2.0	21	100	0	82	9	24	39	26	1.86
71636--71703	23	3.0	23	91	0	91	32	26	23	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71642--71791	21	7.0	21	79	6	140	35	24	18	21	1.96
72520--72589	35	2.0	35	86	5	97	27	28	15	28	1.96
78682--78732	24	2.2	23	82	3	57	76	7	3	11	1.13
79345--79404	26	2.3	26	91	0	93	26	20	20	33	1.97
79397--79421	12	2.1	12	100	0	50	52	16	8	24	1.70
83807--83831	12	2.1	12	100	0	50	76	0	0	24	0.80
85019--85117	35	2.8	35	84	3	128	38	10	14	37	1.79
90600--90756	65	2.4	65	82	2	172	29	21	19	29	1.97
96609--96765	65	2.4	65	82	2	172	29	21	18	30	1.97
99234--99369	65	2.1	65	89	4	204	30	18	23	27	1.98
100421--100469	19	2.6	19	87	9	66	32	16	24	26	1.96
100482--100572	45	2.0	46	91	2	148	27	19	25	27	1.99
100592--100629	20	1.9	20	94	0	67	18	15	34	31	1.92
108216--108253	20	1.9	20	100	0	76	21	15	31	31	1.94
110281--110312	16	1.9	17	93	6	57	53	0	3	43	1.16
110709--110774	21	3.0	23	75	8	82	25	21	24	28	1.99
110709--110809	44	2.3	43	85	8	134	24	19	25	29	1.99
110714--110790	23	3.5	22	75	7	75	24	23	24	27	2.00
115691--115717	13	2.1	13	100	0	54	29	22	14	33	1.94
120679--120728	24	2.0	24	84	3	64	54	0	2	44	1.11
121315--121367	21	2.5	21	81	6	72	20	26	18	33	1.96
121394--121526	41	3.3	42	79	9	125	36	24	14	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121439--121504	20	3.3	20	85	4	89	27	27	16	28	1.97
121448--121511	20	3.2	20	88	0	101	29	25	17	28	1.97
122010--122047	20	1.9	20	88	0	58	13	13	21	52	1.73
122184--122238	25	2.2	24	78	15	58	20	9	18	52	1.71
123367--123414	18	2.7	18	93	0	87	27	45	12	14	1.81
123937--123983	20	2.3	20	92	0	76	38	27	19	14	1.91
124051--124130	33	2.4	33	89	0	115	12	17	21	48	1.80
124124--124189	20	3.3	20	89	0	96	16	22	24	36	1.94
124162--124214	20	2.7	19	82	5	52	24	15	24	35	1.94
124557--124612	21	2.7	20	72	8	58	26	39	12	21	1.89
124557--124645	42	2.1	42	87	4	126	24	41	12	21	1.87
124557--124675	42	2.8	42	82	7	118	24	37	15	22	1.92
126249--126275	14	1.9	14	100	0	54	48	14	22	14	1.81
126297--126352	20	2.8	20	94	0	94	16	23	21	39	1.92
126710--126752	20	2.2	20	91	0	68	30	20	20	27	1.98
127477--127530	24	2.2	24	90	0	81	22	16	20	40	1.91
127705--127729	12	2.1	12	100	0	50	72	0	28	0	0.86
130030--130084	19	2.8	19	80	2	65	40	20	21	18	1.92
130030--130106	20	4.3	18	73	20	63	41	18	23	16	1.90
130057--130150	33	2.8	33	93	0	161	45	19	23	11	1.83
130037--130153	19	6.6	19	66	19	65	43	20	23	11	1.85
130150--130214	19	3.4	19	95	0	121	12	15	26	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130198--130276	14	5.3	14	72	14	68	8	24	20	46	1.78
130150--130226	38	2.2	36	86	11	106	11	15	27	45	1.81
130219--130288	33	2.1	33	97	0	131	11	25	17	45	1.81
130184--130273	47	1.9	47	86	4	128	10	22	22	45	1.81
130233--130291	19	3.4	19	68	22	65	13	23	16	45	1.83
130398--130434	14	2.6	14	91	0	65	45	21	0	32	1.52
131786--131852	21	3.2	21	68	4	55	19	20	35	23	1.95
131786--131908	42	2.9	41	80	7	113	22	17	36	22	1.95
134090--134185	20	5.2	20	76	21	109	47	16	23	11	1.79
134136--134192	14	3.7	14	72	20	51	45	21	22	10	1.82
134087--134211	33	3.6	33	88	7	160	48	17	22	12	1.80
134824--135040	20	10.6	20	70	10	118	24	19	18	36	1.94
134824--135040	41	5.3	40	72	9	127	24	19	18	36	1.94
134826--135061	61	3.8	60	71	10	172	25	19	19	35	1.95
135030--135124	21	4.5	21	89	3	138	36	14	26	22	1.93
145628--145692	23	2.8	23	77	15	62	75	3	3	18	1.07
145612--145696	13	7.0	12	71	15	50	74	3	2	20	1.08
146552--146580	15	2.0	15	93	6	51	6	6	0	86	0.72
156161--156185	12	2.1	12	100	0	50	24	16	8	52	1.70
157544--157591	22	2.2	22	100	0	96	29	37	0	33	1.58
158355--158388	17	1.9	18	88	5	52	32	32	11	23	1.91
158406--158452	20	2.3	21	82	17	64	25	36	8	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158468--158545	40	2.0	40	87	10	115	32	21	8	37	1.85
163744--163923	35	5.1	35	83	5	195	43	3	10	42	1.56
163744--163923	69	2.6	70	82	6	202	43	3	10	42	1.56
163915--163951	13	2.8	13	87	0	56	35	2	16	45	1.61
163940--164004	29	2.2	30	88	2	96	35	1	10	52	1.46
164003--164054	10	5.2	10	77	22	56	26	0	3	69	1.06
165229--165267	17	2.2	18	86	4	53	23	10	0	66	1.22
165340--165415	24	3.3	24	67	10	77	30	6	0	63	1.20
165330--165422	45	2.1	45	100	0	186	27	6	0	65	1.17
165989--166018	13	2.3	13	100	0	60	36	50	6	6	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19