genome.fa.s8824.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008824.1 Hibiscus syriacus cultivar Beakdansim tig00111996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4603428

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  4  of  19  ( 2203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604850--604890	22	2.0	20	85	9	55	73	2	9	14	1.19
605007--605037	4	7.8	4	100	0	62	77	0	22	0	0.77
605606--605656	2	26.0	2	96	4	95	50	0	0	49	1.00
613278--613385	46	2.4	46	80	13	125	34	20	17	27	1.95
613323--613447	64	1.9	65	85	4	173	30	23	19	27	1.98
613425--613467	19	2.4	19	84	7	54	23	27	20	27	1.99
619222--619316	23	4.4	21	75	9	77	27	25	22	25	2.00
619241--619321	23	3.7	23	75	8	87	25	24	24	24	2.00
619222--619316	44	2.2	42	85	7	120	27	25	22	25	2.00
619240--619339	44	2.3	42	78	8	103	27	25	25	23	2.00
621272--621349	2	39.0	2	100	0	156	50	0	0	50	1.00
621967--622177	65	3.3	64	82	7	239	31	22	17	28	1.97
622148--622196	19	2.6	19	84	9	57	24	28	20	26	1.99
621967--622200	129	1.8	130	80	6	287	30	23	18	27	1.97
624421--624510	21	4.3	21	76	4	85	30	14	16	38	1.89
624465--624517	21	2.5	21	84	6	63	30	13	16	39	1.87
627782--627858	21	3.7	21	75	3	66	31	19	14	35	1.92
629333--629434	53	1.9	52	96	2	186	37	21	18	22	1.94
631826--631870	16	2.8	16	80	6	56	40	4	20	35	1.72
631856--632264	138	3.1	126	81	13	459	46	14	15	23	1.82
632071--632095	4	6.2	4	100	0	50	76	0	0	24	0.80
632232--632298	29	2.3	29	84	7	91	52	2	13	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632232--632309	29	2.7	29	82	7	88	55	3	11	29	1.53
633297--633355	25	2.4	25	100	0	118	28	23	22	25	1.99
633503--634191	137	5.0	137	84	1	795	26	15	29	28	1.96
634193--634385	67	2.9	66	87	4	280	39	13	16	30	1.87
634722--634832	36	3.1	36	86	1	152	40	11	18	28	1.86
634720--634848	36	3.6	36	81	10	140	39	13	19	27	1.89
637349--637382	16	2.1	16	94	0	59	38	14	17	29	1.90
638354--638432	20	3.7	21	77	11	63	18	24	31	25	1.98
638374--638434	20	2.9	20	85	7	68	18	26	31	24	1.97
642233--642272	21	1.9	21	85	10	55	35	10	2	52	1.48
645944--646010	23	2.8	23	82	11	82	56	4	5	32	1.43
646830--646863	16	2.2	16	89	5	52	2	11	5	79	1.02
646863--646911	18	2.8	18	84	3	64	6	16	4	73	1.19
646869--646916	18	2.5	19	83	13	62	4	16	4	75	1.12
649803--649837	17	2.0	18	94	5	63	51	5	8	34	1.56
649944--649980	16	2.2	17	95	4	67	64	8	5	21	1.40
651010--651053	16	2.8	16	78	0	61	38	4	25	31	1.76
651133--651426	126	2.3	126	83	5	385	48	12	12	25	1.76
651369--651403	15	2.2	17	90	10	56	68	5	2	22	1.24
652304--652344	21	2.0	21	85	0	55	19	21	14	43	1.87
652341--652393	20	2.7	20	93	0	88	37	20	20	20	1.94
652380--652466	20	4.3	20	89	0	129	31	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655791--655899	20	5.4	20	92	2	166	35	24	22	17	1.95
657496--657593	21	4.7	21	75	3	90	23	18	34	23	1.96
657488--657593	42	2.5	42	81	3	124	23	16	36	22	1.94
658078--658166	20	4.4	20	92	0	115	35	23	19	21	1.95
658189--658276	20	4.8	20	77	19	93	19	19	21	39	1.92
658187--658363	53	3.3	52	71	21	143	16	19	20	42	1.89
658317--658366	20	2.5	20	86	0	64	20	18	22	40	1.92
660253--660308	20	2.8	20	86	0	76	53	23	12	10	1.69
660276--660348	20	3.7	20	90	0	110	36	26	17	19	1.94
660699--660764	22	3.0	22	86	0	96	21	10	39	28	1.86
660944--661118	40	4.4	40	95	2	300	20	18	21	40	1.92
660969--661118	20	7.5	20	100	0	300	20	19	20	40	1.92
660944--661118	60	2.9	60	94	3	300	20	18	21	40	1.92
661111--661157	21	2.2	20	85	10	67	36	17	25	21	1.94
672389--672508	40	3.0	41	86	4	154	24	19	24	32	1.97
672387--672611	42	5.5	42	70	19	174	26	18	24	31	1.98
672429--672648	120	1.8	120	93	1	379	25	20	23	30	1.98
672885--673074	53	3.6	53	89	1	292	30	21	25	23	1.99
680387--680420	10	3.4	10	100	0	68	17	52	0	29	1.45
680705--680745	16	2.6	16	96	3	75	36	0	14	48	1.44
682041--682443	203	2.0	200	97	2	754	29	20	22	26	1.99
686483--686515	9	3.8	9	84	8	50	54	3	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686479--686522	17	2.7	16	89	6	70	59	2	0	38	1.10
686558--686601	20	2.2	20	91	0	70	34	0	34	31	1.58
699421--699454	15	2.3	15	89	0	50	79	2	2	14	0.97
699532--699569	16	2.5	15	87	8	58	76	0	7	15	1.01
707509--707554	20	2.3	20	85	7	58	39	6	15	39	1.73
707855--707947	2	46.5	2	100	0	186	50	0	0	49	1.00
711427--711473	20	2.3	20	92	0	76	42	12	4	40	1.63
713637--713776	37	3.8	36	79	11	140	46	4	5	43	1.47
716948--717134	102	1.8	103	87	4	279	42	19	16	22	1.89
717175--717376	101	2.0	101	97	0	377	42	15	10	31	1.81
720534--720766	116	2.0	116	96	0	430	35	23	11	29	1.90
729465--729570	53	2.0	52	88	1	158	40	16	16	25	1.90
737286--737328	20	2.2	20	95	0	77	11	16	4	67	1.38
744821--744850	10	3.0	10	95	0	51	90	3	6	0	0.56
744822--744856	12	3.0	12	91	4	54	91	5	2	0	0.50
746253--746292	16	2.4	17	87	4	55	50	22	7	20	1.73
747314--747355	12	3.7	12	81	12	61	54	35	7	2	1.41
752507--752532	3	8.7	3	100	0	52	34	0	0	65	0.93
753163--753188	3	8.7	3	100	0	52	34	0	0	65	0.93
752268--753581	656	2.0	656	98	0	2520	33	15	18	32	1.92
754664--755055	38	10.4	37	68	10	224	31	18	12	37	1.88
754480--754823	109	3.1	112	83	6	407	32	18	12	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754480--754829	112	3.2	112	83	6	304	31	17	12	38	1.87
754693--755158	76	6.2	75	84	4	548	31	17	11	38	1.86
754699--755158	151	3.1	149	84	2	562	31	17	11	38	1.87
755528--755699	93	1.8	93	82	4	222	31	22	15	31	1.94
758177--758208	2	16.0	2	100	0	64	50	0	0	50	1.00
760164--760210	17	2.8	17	81	12	60	31	0	0	68	0.90
760176--760210	15	2.2	15	90	10	52	34	0	0	65	0.93
764419--764787	186	2.0	184	94	2	650	44	10	3	40	1.55
764729--764790	18	3.3	18	78	8	61	41	1	0	56	1.09
768626--768689	13	4.9	13	92	0	101	21	15	21	40	1.91
780608--780665	29	2.0	29	100	0	116	31	31	10	27	1.90
785999--786712	134	5.3	133	85	3	925	33	19	18	28	1.96
785999--786712	267	2.7	264	86	2	955	33	19	18	28	1.96
787348--787434	44	2.0	45	83	2	113	43	19	16	20	1.88
787497--787880	38	10.0	38	83	5	461	40	16	16	26	1.90
787497--787907	118	3.6	116	81	5	444	39	17	16	26	1.91
789843--789867	10	2.5	10	100	0	50	8	16	0	76	1.02
789879--789952	21	3.5	22	84	13	86	1	18	0	79	0.80
789879--789961	27	3.2	26	81	9	100	1	18	0	80	0.77
789879--789961	7	11.5	8	75	15	58	1	18	0	80	0.77
789879--789962	8	10.5	8	74	12	66	1	17	0	80	0.77
789879--789962	26	3.1	26	74	5	78	1	17	0	80	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797960--798004	20	2.3	19	88	7	72	28	4	11	55	1.54
799805--799846	20	2.2	19	91	8	68	45	11	19	23	1.83
813759--813803	20	2.3	20	80	3	56	48	2	2	46	1.26
814153--814200	21	2.5	19	81	15	62	43	0	8	47	1.33
814158--814198	21	2.0	21	95	0	73	41	0	9	48	1.36
814233--814280	16	2.7	17	78	15	53	43	6	12	37	1.68
826727--826765	21	1.9	20	89	5	60	66	20	0	12	1.24
835753--835799	24	2.0	24	86	0	67	19	31	23	25	1.98
835788--835847	16	3.8	16	72	0	57	26	15	23	35	1.94
839995--840038	19	2.3	19	96	0	79	15	31	20	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19