genome.fa.s8824.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008824.1 Hibiscus syriacus cultivar Beakdansim tig00111996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4603428

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  3  of  19  ( 2203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365345--365385	18	2.3	18	95	0	73	56	24	2	17	1.53
365589--365733	54	2.7	54	78	2	184	21	21	20	36	1.95
365788--365962	66	2.6	65	85	8	228	54	16	2	26	1.54
367313--367406	21	4.5	20	77	9	98	22	17	36	24	1.95
367289--367405	42	2.8	42	85	7	141	22	17	35	23	1.95
367684--367772	21	4.2	21	72	2	63	33	33	13	19	1.90
370068--370270	20	10.1	20	74	14	127	21	13	23	41	1.88
370068--370295	40	5.7	40	72	15	127	21	13	23	41	1.88
370068--370259	61	3.2	61	74	14	191	21	13	22	42	1.87
370078--370335	100	2.6	99	84	6	324	22	12	24	40	1.89
388042--388105	21	3.0	21	83	0	83	32	26	15	25	1.95
388054--388120	21	3.2	21	82	0	71	34	31	13	20	1.92
395068--395098	16	1.9	16	100	0	62	45	19	16	19	1.86
400442--400487	2	23.0	2	100	0	92	50	0	0	50	1.00
401830--401878	3	16.3	3	86	0	71	63	2	0	34	1.06
402004--402975	123	8.0	123	88	3	1442	26	19	14	39	1.90
402018--402975	485	2.0	487	91	2	1546	26	19	14	39	1.91
403786--403947	54	3.0	53	84	3	207	25	24	14	36	1.93
404481--404528	1	48.0	1	78	0	51	0	10	0	89	0.48
404483--404528	8	5.8	8	87	7	67	0	10	0	89	0.50
404482--404521	9	4.6	9	93	6	73	0	10	0	90	0.47
404483--404521	17	2.3	17	100	0	78	0	10	0	89	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408050--408079	2	15.0	2	100	0	60	50	0	0	50	1.00
409473--409558	3	28.3	3	86	6	120	63	2	0	33	1.07
416553--416587	2	17.5	2	100	0	70	48	0	0	51	1.00
419650--419713	23	2.8	23	85	2	85	29	25	23	21	1.99
420777--420820	13	3.4	13	84	15	56	22	2	0	75	0.92
421988--422032	21	2.1	22	87	4	65	35	4	11	48	1.59
423528--423629	51	2.0	51	94	0	177	23	25	26	24	2.00
427401--427449	20	2.5	20	93	3	82	34	12	6	46	1.66
427719--428318	303	2.0	303	97	0	1146	27	23	9	39	1.85
428489--428513	13	1.9	13	100	0	50	80	0	20	0	0.72
428486--428515	6	4.8	6	92	8	51	83	0	16	0	0.65
428486--428524	19	2.1	19	85	9	53	82	0	17	0	0.68
429612--429651	21	2.0	20	85	5	53	42	0	37	20	1.52
436175--436352	90	2.0	90	93	0	302	36	11	7	44	1.69
441596--441633	13	2.8	13	85	14	51	78	0	15	5	0.91
442898--443181	80	3.5	79	83	3	327	32	17	19	30	1.95
446960--447001	21	2.0	21	100	0	84	38	0	33	28	1.58
459166--459271	52	2.0	52	94	0	185	29	10	19	40	1.85
459742--459785	18	2.4	18	100	0	88	18	15	6	59	1.58
460378--460416	18	2.1	19	85	4	53	20	7	5	66	1.36
461198--461250	26	2.0	26	88	0	79	49	5	7	37	1.55
462172--462238	36	1.9	35	81	6	82	37	4	8	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462427--462460	16	2.1	16	88	0	50	23	0	0	76	0.79
462434--462469	16	2.1	17	90	10	56	16	0	2	80	0.83
463062--463107	6	7.7	6	100	0	92	47	0	0	52	1.00
463980--464008	14	2.0	15	93	6	51	68	0	13	17	1.20
466531--466583	6	8.8	6	97	0	88	0	62	0	37	0.96
466847--466887	22	1.9	21	90	5	64	70	4	0	24	1.06
469039--469341	161	1.9	161	93	0	525	33	19	12	33	1.90
469369--469424	23	2.4	23	96	0	103	46	3	21	28	1.68
476352--476399	15	3.0	16	81	9	53	77	4	6	12	1.11
476653--476685	16	2.1	16	100	0	66	30	33	12	24	1.91
484229--484295	34	1.9	34	82	14	84	46	19	13	20	1.83
486842--486871	5	6.0	5	92	0	51	20	3	0	76	0.92
486843--486871	15	1.9	15	100	0	58	20	3	0	75	0.94
486949--486979	3	10.7	3	93	6	55	35	0	0	64	0.94
486952--486979	14	2.0	14	100	0	56	35	0	0	64	0.94
487013--487060	18	2.5	19	83	10	62	8	10	4	77	1.12
486983--487144	86	1.9	86	81	12	199	15	8	2	73	1.18
487051--487105	15	3.6	15	75	20	51	18	7	1	72	1.16
487084--487148	19	3.4	18	78	19	69	15	9	1	73	1.15
487068--487131	26	2.5	25	85	7	85	18	7	0	73	1.07
487119--487178	23	2.5	23	77	20	61	18	3	3	75	1.09
487252--487308	19	3.2	17	76	16	53	17	12	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497967--498018	21	2.5	20	72	12	50	46	17	17	19	1.85
498211--498576	124	2.9	124	89	2	574	32	24	17	25	1.97
498459--499062	251	2.4	250	89	1	913	34	22	17	25	1.96
500604--500645	11	3.5	13	81	18	56	21	0	0	78	0.75
500603--500660	27	2.0	30	81	15	70	22	1	0	75	0.89
502179--502430	84	3.0	84	98	0	477	24	23	17	34	1.95
506760--506828	31	2.2	31	86	0	93	53	10	5	30	1.58
509682--509783	51	2.0	53	84	3	136	13	32	0	52	1.47
511004--511106	51	2.0	53	82	5	129	12	33	0	53	1.45
511954--511979	2	13.0	2	100	0	52	50	0	0	50	1.00
513087--513146	20	3.0	21	90	7	81	28	1	23	46	1.62
513100--513146	20	2.3	20	100	0	94	29	0	23	46	1.52
522572--522616	18	2.6	18	85	3	56	53	4	0	42	1.21
547967--548001	12	2.8	13	91	8	63	48	8	5	37	1.58
548305--548639	166	2.0	168	98	1	656	30	20	20	28	1.98
549682--549754	18	3.8	19	75	15	78	54	5	0	39	1.23
549718--549756	9	4.8	8	87	9	53	56	2	0	41	1.13
549772--549865	44	2.1	45	79	18	108	52	6	1	40	1.34
549807--549889	28	2.8	30	82	15	86	49	9	1	39	1.43
552028--552324	72	4.2	71	82	4	348	40	10	20	28	1.85
552028--552338	70	4.4	70	83	5	365	40	9	20	29	1.85
552046--552369	142	2.2	144	82	4	359	38	10	20	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557596--557823	114	2.0	114	100	0	456	48	7	14	29	1.71
560009--560072	30	2.1	30	88	0	92	62	4	10	21	1.46
560512--560542	13	2.4	13	94	0	53	3	29	0	67	1.06
562959--563037	20	4.0	20	81	1	79	34	15	18	31	1.92
562973--563036	20	3.2	20	86	0	92	34	17	18	29	1.94
562959--563036	40	2.0	39	87	7	113	33	15	19	32	1.93
565007--565049	20	2.2	19	84	12	52	48	4	11	34	1.60
566091--566277	91	2.1	91	92	1	313	39	9	12	39	1.75
566467--566545	20	4.0	20	81	1	97	34	15	20	30	1.93
566467--566545	40	2.0	40	90	2	124	34	15	20	30	1.93
566471--566565	40	2.4	40	82	5	104	33	16	18	30	1.94
566538--566578	20	2.0	20	85	0	55	31	21	14	31	1.94
569435--569498	33	1.9	33	83	0	83	34	12	29	23	1.92
569732--569783	27	1.9	27	84	7	70	38	11	3	46	1.59
575105--575175	21	3.4	21	88	5	99	22	12	30	33	1.91
579302--579376	11	6.6	11	73	8	62	25	22	22	29	1.99
579301--579365	23	2.8	23	92	0	112	24	21	24	29	1.99
579609--579648	18	2.2	18	100	0	80	10	22	5	62	1.46
579616--579655	18	2.2	18	90	0	62	12	22	7	57	1.60
581450--581657	7	29.9	7	74	7	113	43	33	0	21	1.59
581457--581587	28	4.7	28	81	8	151	41	36	1	19	1.61
581535--581668	49	2.7	49	81	2	171	45	29	0	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582049--582089	14	3.1	14	76	20	52	41	0	4	53	1.22
585175--585352	54	3.3	54	83	0	230	38	13	12	34	1.83
585793--585839	20	2.4	22	76	23	59	27	19	17	36	1.93
589383--589478	23	4.3	21	76	9	84	17	18	27	36	1.94
589892--589921	15	2.1	15	93	6	53	20	0	13	66	1.24
591199--591230	15	2.1	15	100	0	64	37	12	21	28	1.90
597156--597190	16	2.2	16	95	5	63	37	0	17	45	1.48
601305--601428	54	2.3	54	88	0	203	36	14	14	34	1.87
604730--604779	25	2.0	25	84	7	66	70	2	0	28	0.99
604730--604779	21	2.4	21	86	6	66	70	2	0	28	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19