Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008824.1 Hibiscus syriacus cultivar Beakdansim tig00111996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4603428

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2203 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4486318--4486369
5
10.8
5
84
12
65
0
17
1
80
0.80
4486315--4486372
16
3.6
16
78
17
66
0
18
1
79
0.82
4486317--4486378
10
6.3
9
80
15
54
1
16
1
80
0.87
4486328--4486377
23
2.2
23
85
7
66
2
16
2
80
0.91
4486586--4486631
15
2.9
16
81
12
51
58
0
30
10
1.32
4493295--4493319
6
4.2
6
100
0
50
0
16
0
84
0.63
4493528--4493562
14
2.4
14
90
4
52
51
0
28
20
1.47
4497896--4497955
30
2.0
31
86
3
86
53
10
8
28
1.63
4498974--4499030
24
2.4
24
85
5
71
28
21
12
38
1.89
4498989--4499035
24
2.0
24
91
0
76
25
19
14
40
1.90
4498997--4499051
24
2.3
24
83
0
65
30
18
18
32
1.95
4501068--4501123
20
2.8
20
83
5
69
41
7
12
39
1.70
4502017--4502076
30
2.0
31
86
3
86
53
10
8
28
1.63
4504508--4504613
49
2.1
49
82
6
133
36
14
19
29
1.91
4504619--4504725
56
2.0
53
89
8
164
42
8
19
28
1.80
4511640--4511669
15
2.1
15
93
6
53
0
20
3
76
0.92
4517000--4517171
86
2.0
86
100
0
344
30
19
18
31
1.96
4521384--4521408
11
2.3
11
100
0
50
40
8
36
16
1.77
4529162--4529201
19
2.0
20
86
13
57
22
10
0
67
1.20
4536537--4536578
16
2.5
17
81
11
52
64
0
16
19
1.30
4542872--4542922
19
2.6
20
87
3
68
45
5
15
33
1.71
4543798--4543857
30
2.0
31
86
3
86
53
10
8
28
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4544891--4544972
24
3.4
24
76
3
76
26
18
21
32
1.97
4547932--4547991
30
2.0
31
86
3
86
53
10
8
28
1.63
4549010--4549066
24
2.4
24
85
5
71
28
21
12
38
1.89
4549025--4549071
24
2.0
24
91
0
76
25
19
14
40
1.90
4549033--4549087
24
2.3
24
83
0
65
30
18
18
32
1.95
4551105--4551155
19
2.6
20
87
3
68
45
5
13
35
1.68
4551524--4551555
10
3.1
10
95
4
55
18
50
9
21
1.75
4554645--4554751
56
2.0
53
89
8
164
42
8
19
28
1.80
4560649--4560696
24
2.0
25
83
4
62
12
22
14
50
1.77
4562198--4562227
5
6.2
5
96
3
53
0
20
0
80
0.72
4570586--4570633
17
2.8
17
81
9
53
2
12
4
81
0.93
4575138--4575162
5
5.0
5
100
0
50
0
20
0
80
0.72
4575147--4575197
19
2.7
18
81
6
57
1
17
5
74
1.11
4576744--4576783
2
20.5
2
94
5
73
50
0
0
50
1.00
4585750--4585800
19
2.6
20
87
3
68
45
5
15
33
1.71
4587331--4587382
24
2.3
22
80
9
61
23
21
19
36
1.95
4588978--4589023
13
3.3
15
79
14
55
2
17
0
80
0.81
4590359--4590425
34
1.9
36
87
6
102
31
35
2
29
1.73
4590862--4590903
14
2.9
15
80
16
52
80
2
14
2
0.90
4596025--4596092
35
1.9
36
93
3
120
30
36
2
29
1.72
4597238--4597288
19
2.6
20
87
3
68
45
5
15
33
1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!