genome.fa.s8958.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008958.1 Hibiscus syriacus cultivar Beakdansim tig00112289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2490255

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2256329--2256415	23	3.9	23	76	10	72	17	19	25	37	1.93
2268237--2268281	21	2.2	21	84	4	56	28	0	24	46	1.53
2268266--2268295	14	2.1	14	93	0	51	36	0	10	53	1.35
2269345--2269622	137	2.0	139	98	1	542	30	14	12	42	1.83
2277607--2277648	2	21.0	2	100	0	84	50	0	0	50	1.00
2278955--2279011	23	2.5	23	78	16	64	26	5	7	61	1.43
2278961--2279004	23	1.9	24	86	9	65	27	6	6	59	1.49
2280230--2280261	16	2.0	16	100	0	64	25	6	6	62	1.42
2286275--2286323	19	2.7	18	81	6	62	34	0	16	48	1.46
2288919--2289829	199	4.6	200	86	1	1193	38	13	13	34	1.84
2292810--2292860	6	8.5	6	88	0	66	29	9	5	54	1.56
2293529--2293585	21	2.7	21	91	0	96	26	21	24	28	1.99
2295118--2295815	351	2.0	351	96	0	1288	30	12	23	33	1.92
2298489--2298553	21	3.1	21	86	8	96	26	24	24	24	2.00
2303555--2303629	33	2.3	33	97	0	141	38	21	4	36	1.72
2335048--2335097	23	2.2	23	85	0	64	26	16	20	38	1.92
2335391--2335444	24	2.2	24	83	6	65	9	16	27	46	1.78
2335401--2335453	14	4.1	14	81	18	69	9	15	24	50	1.73
2335402--2335476	24	3.1	24	88	3	98	12	12	20	56	1.67
2336457--2336531	10	7.7	10	71	21	61	10	12	21	56	1.66
2336463--2336527	16	4.1	16	91	0	112	9	12	21	56	1.63
2363548--2363677	47	2.7	49	82	8	144	29	21	6	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2369880--2370007	48	2.8	48	81	8	140	28	21	7	42	1.80
2374254--2374481	112	2.0	112	90	0	359	31	15	17	35	1.92
2375461--2375496	16	2.2	16	95	0	63	52	8	16	22	1.70
2376723--2376808	43	2.0	43	97	0	163	13	20	12	52	1.74
2383557--2383593	2	18.5	2	100	0	74	48	0	0	51	1.00
2394593--2395425	182	4.6	181	87	2	1157	41	14	16	27	1.88
2397647--2397679	15	2.2	15	94	0	57	18	6	60	15	1.54
2397843--2397905	33	1.9	33	93	0	108	30	0	47	22	1.51
2398088--2398126	18	2.2	18	90	0	60	58	0	38	2	1.12
2400017--2401183	200	5.8	199	83	4	1418	37	13	16	32	1.88
2400017--2401183	402	2.9	398	85	4	1519	37	13	16	32	1.88
2402461--2402506	21	2.2	21	100	0	92	17	23	28	30	1.97
2402461--2402514	21	2.6	21	93	0	81	22	20	27	29	1.98
2402628--2402677	3	16.7	3	78	0	55	40	2	28	30	1.68
2404389--2404429	21	2.0	21	100	0	82	41	9	9	39	1.71
2404188--2404629	222	2.0	222	83	3	559	37	14	16	31	1.89
2404410--2405362	200	4.8	199	83	5	1153	38	13	16	31	1.87
2407644--2407673	15	2.0	15	93	0	51	56	20	10	13	1.65
2407652--2408138	197	2.5	196	84	6	626	39	14	14	31	1.87
2408139--2408305	87	1.9	86	93	1	289	32	13	11	42	1.79
2408223--2408267	23	2.0	23	90	0	72	37	15	6	40	1.74
2411206--2411307	45	2.3	43	86	3	132	23	41	14	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2412287--2412328	20	2.0	20	82	13	50	19	26	28	26	1.98
2413119--2413189	24	3.0	24	83	2	90	21	23	25	29	1.99
2413971--2414047	11	7.0	11	78	0	82	37	12	16	32	1.87
2413971--2414044	22	3.4	22	98	0	139	37	13	16	32	1.87
2418440--2418477	19	2.0	19	90	10	60	13	31	31	23	1.93
2421083--2421275	88	2.2	89	86	2	275	24	6	6	62	1.43
2421461--2421507	2	23.5	2	100	0	94	48	0	0	51	1.00
2425297--2425383	19	4.4	18	83	11	93	78	0	19	2	0.86
2425318--2425379	12	4.8	12	70	18	52	79	0	19	1	0.82
2425297--2425380	29	2.9	29	83	11	86	77	0	20	2	0.88
2427688--2427766	22	3.6	22	91	3	115	34	13	12	39	1.83
2428455--2428640	73	2.5	73	96	0	336	33	14	12	39	1.84
2428510--2428618	36	3.0	37	68	8	96	35	14	13	35	1.86
2428654--2428868	39	5.5	39	87	2	299	42	11	22	23	1.86
2429154--2429305	35	4.4	35	89	1	236	21	42	15	19	1.89
2429272--2429423	45	3.4	45	87	1	191	26	36	15	22	1.93
2429611--2429654	11	3.7	13	82	14	51	9	6	6	77	1.13
2430387--2430578	88	2.2	88	92	1	325	23	4	7	64	1.40
2430751--2430786	2	18.0	2	100	0	72	50	0	0	50	1.00
2431628--2431661	18	1.9	18	88	5	52	38	0	0	61	0.96
2433788--2433838	24	2.1	24	82	7	59	31	0	3	64	1.11
2434642--2434702	14	4.0	15	73	14	54	22	1	0	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2439967--2440026	14	4.1	14	76	14	50	73	0	23	3	0.98
2444760--2444836	22	3.5	22	92	0	136	32	11	15	40	1.84
2445360--2445686	166	2.0	167	91	2	541	35	13	13	38	1.83
2445689--2446361	76	8.9	76	96	1	1206	23	19	21	34	1.96
2446535--2446602	16	3.9	16	83	12	66	48	0	0	51	1.00
2446532--2446584	19	2.7	19	88	11	72	49	0	0	50	1.00
2446553--2446600	2	26.0	2	84	16	68	47	0	0	52	1.00
2447797--2447864	29	2.3	30	82	10	86	29	1	2	66	1.15
2447826--2447875	24	2.1	24	92	7	84	26	0	6	68	1.13
2447832--2447882	24	2.1	24	85	7	68	27	0	5	66	1.14
2449350--2449382	2	16.5	2	100	0	66	48	0	0	51	1.00
2453214--2453245	16	2.0	16	100	0	64	56	31	0	12	1.37
2455684--2456040	82	4.4	82	89	0	534	33	15	15	36	1.89
2459182--2459211	13	2.3	13	100	0	60	23	53	0	23	1.46
2460331--2460386	24	2.3	24	93	6	96	28	16	16	39	1.89
2461487--2461539	21	2.5	20	82	8	61	73	0	0	26	0.83
2461487--2461560	29	2.5	29	86	4	103	68	2	0	28	1.03
2461537--2461570	17	1.9	18	94	5	61	64	8	0	26	1.22
2462067--2462105	19	2.1	19	100	0	78	15	35	15	33	1.89
2467318--2467344	2	13.5	2	100	0	54	0	0	48	51	1.00
2479601--2479654	27	2.0	27	88	0	81	22	35	22	20	1.96
2480897--2480925	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2482248--2482298	25	2.0	25	88	0	75	49	17	13	19	1.80
2482993--2483149	76	2.1	77	97	1	298	39	19	13	27	1.89
2483353--2483446	14	6.7	14	76	13	59	21	2	27	48	1.61
2483386--2483433	7	7.0	7	77	13	55	18	0	35	45	1.50
2483386--2483446	20	3.0	21	87	4	97	19	0	32	47	1.50
2483424--2483457	13	2.5	14	90	4	52	23	0	29	47	1.52
2483825--2484180	184	1.9	183	84	3	475	32	21	17	28	1.96
2486128--2486164	16	2.3	16	100	0	74	24	18	13	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!