genome.fa.s8958.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008958.1 Hibiscus syriacus cultivar Beakdansim tig00112289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2490255

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239204--239237	16	2.1	16	89	10	52	35	0	0	64	0.94
239393--239455	19	3.3	19	70	12	65	23	14	9	52	1.71
239387--239449	20	3.2	20	66	20	60	23	17	7	50	1.72
241443--241480	20	1.9	20	94	0	67	34	7	21	36	1.82
241734--241767	16	2.1	16	88	0	50	23	0	2	73	0.97
241760--241810	23	2.1	23	85	10	66	31	9	3	54	1.51
241861--241953	47	2.0	46	91	4	152	37	7	23	31	1.83
241959--242004	24	1.9	24	95	0	83	34	4	8	52	1.52
242488--242570	40	2.1	40	90	0	130	37	13	12	37	1.82
246854--246899	20	2.3	21	78	17	53	13	8	8	69	1.36
258521--258559	20	2.0	20	84	0	51	51	0	0	48	1.00
259096--259128	15	2.1	16	88	5	50	72	0	3	24	0.98
259924--259964	16	2.5	17	88	4	66	14	19	31	34	1.92
272011--272095	27	2.9	30	68	10	77	23	15	18	42	1.88
275069--275226	21	7.8	20	72	7	86	38	25	17	18	1.92
275193--275347	40	3.8	40	82	4	186	37	26	18	18	1.93
275193--275346	20	7.7	20	80	7	168	37	26	18	18	1.93
275729--275799	33	2.2	33	92	0	115	11	22	18	47	1.80
275879--275988	21	5.8	20	74	17	108	45	18	24	11	1.83
275872--275988	41	3.1	38	81	14	145	46	17	25	11	1.81
275939--275995	14	3.7	14	75	20	60	43	22	24	8	1.81
275931--276011	33	2.5	33	95	0	144	46	22	22	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276007--276104	19	5.7	19	69	22	90	11	22	21	44	1.83
276029--276118	14	5.7	14	69	23	63	10	23	22	44	1.82
276012--276126	33	3.5	33	97	0	221	10	22	20	46	1.80
277822--278569	93	8.1	93	99	0	1462	21	12	19	46	1.83
278617--278745	19	7.3	19	75	17	125	45	28	17	8	1.77
278653--278745	33	2.8	32	91	4	150	46	27	18	7	1.76
278617--278745	52	2.5	52	74	14	140	45	28	17	8	1.77
278741--278875	19	7.6	19	75	16	128	11	19	23	45	1.82
278763--278819	14	3.7	14	77	20	60	10	21	22	45	1.82
278746--278838	33	2.8	33	95	0	168	10	20	21	47	1.80
280798--280833	14	2.6	14	95	0	63	33	0	22	44	1.53
280940--281037	19	5.4	19	84	13	143	45	17	22	14	1.84
280940--281056	53	2.2	53	95	4	211	43	17	23	14	1.87
281046--281170	52	2.3	55	87	8	175	16	21	16	45	1.85
281046--281201	19	8.7	19	81	14	197	16	20	17	45	1.85
283643--283689	24	2.0	24	87	8	69	38	21	14	25	1.92
284371--284640	20	13.5	20	87	1	290	20	17	25	37	1.94
284627--284709	21	4.0	21	73	6	78	25	16	24	33	1.96
284607--284705	42	2.4	43	77	11	100	21	18	23	37	1.94
287791--287886	45	2.1	45	82	0	111	22	20	19	36	1.95
290355--290385	16	1.9	16	93	0	53	22	35	22	19	1.96
290651--290691	15	2.7	16	74	11	50	29	26	31	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296617--296683	24	2.8	24	76	0	71	41	4	50	2	1.37
297024--297074	24	2.1	24	88	0	75	19	9	56	13	1.65
301163--301211	14	3.3	15	75	13	57	32	0	0	67	0.91
304251--304298	19	2.5	19	96	0	87	50	25	0	25	1.50
312983--313017	17	2.0	17	88	5	52	40	8	11	40	1.72
321304--321343	21	1.9	21	89	0	62	10	25	40	25	1.86
324127--324188	34	1.9	33	83	9	83	46	8	17	27	1.76
338089--338139	20	2.5	20	96	0	93	45	9	23	21	1.82
338288--338376	39	2.3	38	78	19	94	50	3	2	43	1.31
342786--342845	29	2.1	29	90	0	93	43	13	11	31	1.80
356548--356595	21	2.3	21	96	0	87	29	25	22	22	1.99
356799--356841	17	2.5	17	84	0	68	32	16	23	27	1.96
370243--370694	225	2.0	224	96	2	845	23	14	24	36	1.93
375733--375772	21	1.9	20	85	10	53	62	0	12	25	1.30
377071--377113	2	21.5	2	100	0	86	48	0	0	51	1.00
380347--380410	23	2.8	23	92	0	101	26	10	14	48	1.76
385589--385648	23	2.4	26	72	8	63	45	5	1	48	1.34
386713--386748	12	2.9	13	84	16	58	36	0	0	63	0.94
387113--387203	29	3.2	27	76	16	85	18	6	1	73	1.11
387119--387172	21	2.7	21	83	16	78	16	7	0	75	1.01
387112--387173	12	5.5	11	77	11	63	16	6	0	77	0.97
398414--399221	105	7.7	105	94	0	1393	33	25	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401036--401087	12	4.8	11	77	18	56	36	0	1	61	1.07
401035--401109	21	3.6	21	73	18	68	32	2	1	64	1.16
401182--401206	2	12.5	2	100	0	50	48	0	0	52	1.00
410239--410323	31	2.6	34	88	5	122	64	15	1	18	1.35
410316--410369	23	2.3	23	96	0	99	59	0	14	25	1.36
410364--410396	13	2.4	14	90	10	59	72	6	6	15	1.24
412585--412657	24	3.0	24	79	4	74	69	1	0	28	0.96
417305--417351	20	2.5	20	86	6	62	40	2	2	55	1.24
417317--417363	20	2.4	19	92	7	76	46	0	0	53	1.00
418543--418595	26	2.0	26	82	13	65	39	5	3	50	1.44
422213--422324	42	2.7	42	94	0	197	15	16	18	49	1.80
422507--422553	20	2.3	22	75	20	57	42	0	0	57	0.98
422514--422635	30	4.2	30	75	14	96	50	0	0	48	1.12
422522--422677	59	2.7	57	79	13	149	50	0	1	47	1.13
422639--422706	11	6.0	11	70	16	50	48	1	0	50	1.10
422652--422687	12	2.8	14	80	20	51	52	0	0	47	1.00
422652--422715	23	2.7	23	85	4	74	51	1	0	46	1.10
423006--423057	15	3.5	15	86	0	77	36	17	5	40	1.73
422991--423060	30	2.4	29	92	2	113	34	15	5	44	1.71
426409--426525	60	2.0	60	87	0	171	45	3	17	33	1.66
426930--426974	19	2.4	19	80	0	54	55	4	2	37	1.32
427083--427109	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428785--429142	36	9.4	37	78	13	311	44	5	3	46	1.45
429732--431042	164	7.9	164	80	5	1115	25	20	24	29	1.99
429732--431006	248	5.1	248	87	1	1574	25	20	24	29	1.99
429732--431006	84	15.4	83	78	5	1173	25	20	24	29	1.99
436315--436349	2	17.5	2	100	0	70	51	0	0	48	1.00
436536--436577	7	5.7	7	86	10	57	80	0	2	16	0.81
436537--436577	8	5.4	8	85	5	50	82	0	2	14	0.76
437962--438003	4	10.8	4	84	5	59	80	0	0	19	0.70
437963--438009	19	2.5	19	86	3	69	80	0	0	19	0.70
437966--438011	15	3.1	15	84	3	58	82	0	0	17	0.67
438053--438226	71	2.3	76	86	7	241	45	5	3	45	1.44
438053--438378	36	8.4	36	75	16	228	45	6	3	44	1.46
438109--438246	71	1.9	71	83	2	179	47	5	2	44	1.37
438142--438308	83	2.0	80	90	5	264	47	3	2	46	1.35
443931--444559	55	11.9	51	89	5	681	29	25	15	29	1.96
445870--445985	8	13.9	8	70	27	57	8	19	0	70	1.18
445871--445905	7	4.7	7	86	13	52	11	11	0	77	1.00
445870--445906	16	2.3	16	100	0	74	10	10	0	78	0.97
445870--445941	19	4.1	18	84	7	71	8	18	0	73	1.07
445894--445974	25	3.1	25	77	13	67	7	20	1	70	1.19
445938--445992	18	3.2	18	78	21	55	7	21	1	69	1.23
445913--445975	33	1.9	33	83	6	83	6	22	1	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458841--459368	184	2.9	184	96	0	948	33	16	14	35	1.89
460833--460919	3	29.0	3	77	0	84	24	34	5	35	1.79
460833--460934	18	5.7	18	79	0	87	22	34	6	36	1.81
460841--460931	42	2.2	42	91	0	146	21	35	7	35	1.83
462386--463753	199	6.9	199	97	0	2589	31	15	15	37	1.89
462386--463753	396	3.4	397	98	0	2578	31	15	15	37	1.89
462386--463753	595	2.3	595	98	0	2639	31	15	15	37	1.89
463872--463920	19	2.6	19	93	0	80	57	10	2	30	1.43
465705--465770	33	2.0	33	90	0	105	22	48	0	28	1.51
465804--465868	21	3.1	21	80	6	69	15	29	15	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11