genome.fa.s8958.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008958.1 Hibiscus syriacus cultivar Beakdansim tig00112289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2490255

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913306--913465	48	3.4	48	72	13	154	26	16	28	28	1.97
913308--913503	91	2.2	91	87	1	277	26	16	28	28	1.97
913356--913505	43	3.4	43	73	12	140	26	16	28	28	1.96
913579--913620	20	2.1	20	90	0	66	45	16	21	16	1.86
915117--915164	13	3.6	14	78	18	57	2	18	6	72	1.15
920778--920809	3	10.7	3	93	0	55	62	3	0	34	1.11
924381--924515	66	2.1	65	90	1	207	27	14	11	47	1.77
927742--928098	81	4.4	81	77	3	342	29	17	19	33	1.95
927923--928059	41	3.3	40	71	13	116	26	16	21	35	1.94
931151--931207	21	2.7	20	89	5	78	21	5	28	45	1.73
935274--935321	21	2.3	21	100	0	96	27	20	27	25	1.99
935399--935449	19	2.7	19	84	6	68	35	15	9	39	1.81
940408--940445	20	1.9	20	94	0	67	34	15	21	28	1.94
942008--942066	23	2.6	22	76	7	64	22	23	22	32	1.98
946316--946558	106	2.3	107	87	5	350	34	18	7	38	1.80
946516--946595	32	2.5	33	89	2	117	35	21	5	38	1.75
946410--946691	140	2.0	138	82	5	345	36	19	6	37	1.79
948578--948633	26	2.1	25	83	9	67	41	10	7	41	1.67
953839--953934	27	3.8	25	77	20	103	59	2	2	36	1.21
953823--953923	23	4.5	22	76	14	91	58	1	2	36	1.25
957319--957426	46	2.4	45	87	6	155	37	6	24	32	1.81
957964--958026	20	3.1	20	82	13	83	34	28	6	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957967--958096	40	3.2	41	77	5	131	32	22	10	34	1.89
958255--958294	16	2.5	16	91	0	62	25	5	0	70	1.08
959032--959078	24	2.0	24	95	0	85	27	21	17	34	1.95
961699--961746	19	2.5	20	86	3	71	16	27	14	41	1.87
963198--963315	21	5.6	21	78	7	123	23	19	34	22	1.96
963198--963318	42	2.9	40	83	4	143	24	19	33	21	1.97
963194--963311	63	1.9	62	85	5	166	22	19	35	22	1.96
963459--963500	4	10.5	4	89	0	66	71	2	0	26	0.98
964343--964577	117	2.0	117	98	1	454	39	24	12	23	1.89
965406--965468	20	3.2	20	93	2	101	47	23	17	11	1.79
965475--965513	20	2.0	20	100	0	78	15	12	20	51	1.76
965477--965520	20	2.2	20	91	0	70	15	13	20	50	1.78
965837--965883	22	2.1	22	100	0	94	19	14	44	21	1.86
966664--966734	6	12.2	6	79	5	56	49	23	1	25	1.59
966664--966734	17	4.1	18	78	3	56	49	23	1	25	1.59
966665--966734	29	2.4	29	85	4	88	50	22	1	25	1.58
966925--967109	40	4.6	40	77	8	160	41	22	14	22	1.89
966925--967091	20	8.4	20	75	5	131	41	22	14	21	1.89
966958--967109	60	2.5	61	84	6	175	41	22	13	22	1.89
967658--967696	14	2.8	14	92	0	60	51	33	7	7	1.59
967706--967738	14	2.4	14	89	0	57	12	21	18	48	1.80
967720--967763	20	2.2	20	83	0	52	13	20	15	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969065--969107	21	2.0	21	81	0	50	27	32	23	16	1.96
969653--969868	103	2.1	103	98	0	414	24	12	25	37	1.91
970222--970828	303	2.0	302	96	0	1124	30	12	20	36	1.90
976231--976265	18	1.9	18	88	0	52	28	31	28	11	1.92
976746--976971	103	2.2	102	93	3	407	25	13	24	36	1.92
976980--977031	23	2.3	23	93	0	86	19	30	26	23	1.98
976979--977042	23	2.8	23	78	4	76	20	26	25	28	1.99
978709--978758	21	2.4	21	86	0	73	18	18	32	32	1.94
979193--979260	21	3.2	21	68	0	55	22	35	14	27	1.93
980573--980743	66	2.6	66	85	13	216	28	2	16	53	1.55
980843--980888	20	2.3	20	92	0	74	43	21	17	17	1.88
980797--980911	54	2.1	54	85	0	149	34	20	18	26	1.95
981172--981207	18	2.0	18	94	0	63	16	2	25	55	1.55
983455--983514	24	2.5	24	88	0	84	40	16	16	26	1.90
983475--983522	24	2.0	24	87	0	69	39	18	16	25	1.91
984257--984294	16	2.5	15	84	12	51	65	0	5	28	1.14
984431--984483	18	2.9	18	78	8	63	37	13	18	30	1.89
984470--984536	19	3.6	18	84	8	53	37	10	19	32	1.86
984489--984557	19	3.6	19	90	5	104	31	11	21	34	1.89
984548--984613	20	3.3	20	83	8	73	19	16	25	37	1.93
986127--986180	20	2.7	19	75	8	63	33	31	18	16	1.93
986230--986521	20	14.5	20	76	6	232	38	23	18	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986291--986521	40	5.7	40	89	1	293	37	23	19	19	1.94
987978--988396	209	2.0	210	97	0	795	27	15	25	32	1.95
990601--990679	19	4.4	19	76	15	87	46	21	20	11	1.81
990547--990679	52	2.5	53	85	2	169	45	19	21	12	1.83
990704--990767	21	3.1	21	84	6	87	10	20	17	51	1.75
990732--990769	20	1.9	20	88	0	58	13	15	21	50	1.78
991209--991380	20	8.5	20	78	2	191	18	19	24	37	1.94
991210--991380	40	4.2	40	90	1	261	18	19	23	37	1.94
991210--991380	81	2.1	81	89	2	263	18	19	23	37	1.94
991389--991441	20	2.7	20	85	5	72	13	16	24	45	1.83
991210--991441	121	1.9	121	83	5	299	18	18	24	38	1.93
991661--991702	22	1.9	22	85	9	59	35	7	0	57	1.26
994775--994828	28	1.9	28	92	0	90	14	12	11	61	1.58
994728--994853	30	4.3	29	73	6	83	18	12	14	54	1.70
995076--995191	58	2.0	58	100	0	232	31	15	25	27	1.96
999427--999465	2	19.5	2	94	0	69	48	0	2	48	1.15
1000848--1001102	66	3.8	66	79	11	263	30	10	14	43	1.80
1000914--1000974	30	2.1	30	84	3	79	34	8	16	40	1.78
1000876--1001102	66	3.4	66	86	3	323	29	10	15	44	1.80
1001047--1001167	30	4.1	29	77	11	104	33	12	15	38	1.85
1001248--1001569	133	2.4	130	81	5	337	23	31	18	25	1.97
1005011--1005097	24	3.7	24	82	3	113	28	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005013--1005111	24	4.2	24	79	7	94	28	15	18	38	1.91
1007100--1007320	113	1.9	114	99	0	435	43	5	19	30	1.75
1007780--1007823	22	2.0	22	86	8	63	31	13	27	27	1.94
1007703--1007905	93	2.1	96	82	3	250	31	17	24	27	1.97
1008248--1008408	55	2.9	55	90	3	243	27	19	21	31	1.97
1014329--1014488	55	2.9	54	90	3	232	29	20	19	30	1.97
1015566--1015640	30	2.5	30	75	0	87	16	9	12	62	1.53
1017669--1017704	15	2.3	16	90	4	56	47	27	13	11	1.77
1026453--1026485	13	2.4	14	90	5	50	12	48	21	18	1.80
1026512--1026559	22	2.2	22	88	0	69	20	20	25	33	1.97
1028431--1028470	19	2.1	19	85	0	53	12	22	12	52	1.72
1029576--1029620	16	2.8	16	80	16	56	57	0	0	42	0.98
1029579--1029620	17	2.5	17	84	3	59	61	0	0	38	0.96
1034231--1034514	70	4.0	71	81	3	324	41	10	17	30	1.83
1034354--1034474	34	3.5	33	70	9	98	43	11	19	25	1.84
1034232--1034506	141	2.0	141	85	5	378	41	10	18	30	1.84
1035005--1035326	160	2.0	162	98	1	630	34	22	16	26	1.95
1035740--1035794	23	2.4	23	78	6	58	38	25	18	18	1.93
1035754--1035803	23	2.2	23	85	7	66	32	26	24	18	1.97
1035819--1036036	103	2.1	103	98	0	418	36	24	12	26	1.91
1036485--1036612	64	2.0	67	89	7	201	26	18	19	35	1.95
1036497--1036657	64	2.5	63	82	5	189	26	20	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042727--1042790	23	2.7	23	76	11	60	29	25	23	21	1.99
1042809--1043023	103	2.1	103	97	0	403	36	24	13	25	1.91
1043549--1043599	19	2.7	19	96	0	93	25	29	15	29	1.96
1043483--1043664	83	2.2	83	82	8	210	26	21	16	34	1.95
1047154--1047187	16	2.2	15	89	5	50	32	0	20	47	1.51
1049643--1049709	18	3.7	18	91	0	116	29	32	20	16	1.95
1049912--1049999	32	2.8	32	80	0	104	31	19	13	35	1.91
1049912--1050012	32	3.2	32	77	5	96	29	17	15	36	1.92
1050977--1051031	21	2.6	21	97	0	101	30	25	20	23	1.98
1054477--1054501	13	1.9	13	100	0	50	68	0	8	24	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11