genome.fa.s8958.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008958.1 Hibiscus syriacus cultivar Beakdansim tig00112289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2490255

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681100--1681157	27	2.2	27	87	3	82	12	10	5	72	1.26
1681574--1681652	21	3.8	21	77	8	81	51	22	0	25	1.48
1682309--1682352	20	2.2	20	84	8	54	34	25	6	34	1.82
1684671--1684710	18	2.2	18	91	8	64	0	32	22	45	1.53
1685883--1685921	9	4.1	9	84	12	51	53	12	2	30	1.52
1694293--1694336	22	2.0	22	81	4	52	36	9	18	36	1.82
1697576--1697618	21	2.0	21	86	0	59	16	25	27	30	1.97
1704305--1704342	20	1.9	20	88	0	58	10	31	34	23	1.89
1704368--1704407	21	1.9	21	84	0	53	17	20	30	32	1.95
1709170--1709476	36	8.6	36	82	5	320	47	19	8	25	1.76
1709170--1709469	54	5.6	54	83	4	358	48	19	7	24	1.75
1709170--1709476	18	17.1	18	78	8	281	47	19	8	25	1.76
1712497--1712596	24	4.2	24	71	5	76	48	16	12	24	1.79
1713739--1713774	18	2.0	18	88	0	54	30	16	0	52	1.44
1715069--1715124	15	3.7	15	79	9	53	23	21	35	19	1.96
1715102--1715143	13	3.2	13	86	0	66	14	19	45	21	1.85
1715107--1715179	31	2.4	31	85	0	101	15	15	47	21	1.81
1715138--1715173	13	2.8	13	82	0	54	19	13	47	19	1.83
1718486--1718520	18	1.9	18	88	0	52	28	17	0	54	1.43
1719895--1719928	13	2.6	13	90	0	50	20	11	47	20	1.81
1722069--1722112	6	7.3	6	85	10	54	0	61	0	38	0.96
1722071--1722112	10	4.2	10	87	0	57	0	61	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1727846--1727907	32	1.9	32	90	6	99	35	19	22	22	1.96
1730054--1730097	22	2.0	23	86	4	63	27	25	20	27	1.99
1731357--1732367	449	2.3	441	82	6	1188	38	15	16	29	1.89
1740308--1740379	22	3.3	22	88	5	110	27	20	25	26	1.99
1740316--1740378	21	3.0	21	92	2	99	23	23	26	25	2.00
1746623--1746665	21	2.0	21	95	0	77	23	34	20	20	1.96
1747170--1747241	22	3.3	22	86	5	101	27	19	25	27	1.99
1747178--1747240	21	3.0	21	90	2	90	23	22	26	26	2.00
1750809--1750864	26	2.2	26	86	0	76	23	23	30	23	1.99
1756123--1756161	17	2.2	18	90	4	62	56	10	5	28	1.54
1756918--1756959	22	1.9	23	90	9	70	28	9	7	54	1.59
1756976--1757023	20	2.5	20	89	3	71	33	14	4	47	1.63
1758203--1758243	21	1.9	22	90	5	66	21	17	19	41	1.90
1761143--1761176	16	2.1	16	88	0	50	11	26	0	61	1.30
1764497--1764534	19	2.0	19	85	10	51	5	23	0	71	1.07
1769772--1769837	27	2.4	27	100	0	132	30	19	13	36	1.91
1771002--1771037	18	2.0	18	88	0	54	33	30	19	16	1.94
1771390--1771426	13	2.6	15	79	12	51	29	13	13	43	1.82
1775479--1775515	13	2.6	15	79	12	51	29	13	13	43	1.82
1778628--1778667	21	1.9	21	89	0	62	55	7	7	30	1.56
1782478--1782561	22	3.8	22	78	6	89	26	28	23	21	1.99
1784139--1784179	18	2.3	18	86	0	55	46	19	31	2	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792828--1792948	51	2.5	47	80	12	120	41	6	19	32	1.78
1794699--1794765	3	22.3	3	86	6	73	59	4	2	32	1.32
1796306--1796374	30	2.3	30	92	0	111	53	18	13	14	1.72
1798306--1798438	67	2.0	64	81	7	151	48	19	11	21	1.80
1806762--1806874	34	3.3	34	86	2	147	38	12	12	36	1.81
1806762--1806884	17	7.2	17	71	14	83	39	13	11	35	1.80
1812737--1812810	22	3.4	22	70	17	64	24	18	18	37	1.94
1813246--1813278	16	2.1	16	94	0	57	39	9	18	33	1.82
1813366--1813460	46	2.2	42	84	7	118	15	23	26	34	1.95
1813366--1813460	23	4.3	22	82	7	104	15	23	26	34	1.95
1815481--1815623	64	2.2	64	85	7	184	32	23	20	23	1.98
1816376--1816470	18	5.1	18	70	9	73	26	22	26	25	2.00
1816374--1816470	38	2.6	38	93	0	167	27	21	25	24	1.99
1816398--1816472	20	3.8	20	75	7	73	29	21	24	25	1.99
1818686--1818738	25	2.2	24	82	3	61	50	13	16	18	1.77
1822082--1822126	21	2.1	21	84	12	56	53	4	4	37	1.41
1823530--1823579	19	2.6	19	83	3	55	12	16	32	40	1.84
1831468--1831536	29	2.4	29	85	0	84	44	15	15	23	1.85
1831976--1832033	7	8.4	7	90	9	93	60	0	39	0	0.97
1831980--1832033	20	2.7	20	88	8	83	59	0	40	0	0.98
1831976--1832033	27	2.1	28	90	9	93	60	0	39	0	0.97
1840935--1840969	3	11.7	3	100	0	70	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840968--1841009	3	14.0	3	100	0	84	33	0	33	33	1.58
1841485--1841531	20	2.3	20	88	0	67	34	12	27	25	1.92
1847823--1847919	44	2.2	45	90	3	151	27	12	21	38	1.89
1857558--1857660	12	9.2	11	71	16	52	76	0	15	6	1.04
1857578--1857722	16	9.4	16	75	19	98	77	0	13	8	1.03
1857578--1857722	8	18.9	7	72	17	78	77	0	13	8	1.03
1857608--1857722	40	3.0	40	77	17	118	77	0	15	6	0.97
1859007--1859116	36	3.0	37	89	1	159	38	18	20	22	1.94
1859124--1859479	51	6.9	51	93	1	541	29	15	28	26	1.96
1868502--1868545	21	2.1	21	86	0	61	31	29	25	13	1.94
1868573--1868617	22	2.0	22	86	4	63	31	31	26	11	1.91
1870145--1870207	23	2.7	23	90	0	90	22	28	23	25	1.99
1875414--1875476	23	2.7	23	87	0	81	20	28	23	26	1.99
1882728--1882764	18	2.1	18	100	0	74	35	27	10	27	1.90
1883377--1883535	77	2.0	79	84	4	207	45	5	11	38	1.62
1887493--1887535	17	2.6	17	85	3	52	32	16	18	32	1.93
1888074--1888117	23	2.0	23	81	4	54	52	9	2	36	1.46
1893894--1893974	22	3.7	22	75	3	83	33	19	20	25	1.97
1895227--1895304	31	2.5	31	91	0	120	23	12	14	50	1.77
1896849--1896890	18	2.3	18	95	0	75	38	11	14	35	1.83
1896896--1896960	31	2.1	31	88	0	94	47	13	15	23	1.81
1897460--1897508	3	16.3	3	100	0	98	32	34	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1900450--1900482	15	2.1	17	88	11	52	45	0	0	54	0.99
1900629--1901174	273	2.0	273	99	0	1076	32	14	17	35	1.91
1901341--1901382	17	2.5	17	92	3	68	71	14	0	14	1.15
1906371--1906400	14	2.1	15	93	6	53	33	0	3	63	1.11
1906912--1907002	23	4.0	23	85	0	119	19	26	25	28	1.99
1911884--1912097	110	2.0	107	97	2	401	24	14	21	39	1.91
1912073--1912164	23	4.0	23	82	0	112	18	25	23	32	1.97
1919303--1919393	44	2.0	46	95	4	168	40	28	17	13	1.87
1921208--1921273	23	2.8	23	81	6	71	33	4	0	62	1.16
1924545--1924578	14	2.5	14	95	4	61	26	20	8	44	1.81
1932955--1933008	22	2.5	22	93	0	90	35	16	11	37	1.84
1932955--1933017	22	2.9	22	85	4	74	38	14	12	34	1.84
1933225--1933321	40	2.4	40	94	0	167	46	10	22	20	1.81
1933263--1933327	20	3.3	19	68	23	53	41	10	23	24	1.86
1933261--1933526	122	2.2	122	87	4	367	39	14	19	26	1.90
1933619--1933678	17	3.4	17	68	17	50	50	8	23	18	1.74
1933920--1933978	3	19.7	3	94	0	100	32	1	1	64	1.13
1935475--1935750	148	1.9	148	84	6	382	39	6	6	47	1.54
1942205--1942254	2	25.0	2	100	0	100	50	0	0	50	1.00
1943236--1943267	15	2.1	15	94	0	55	3	18	43	34	1.66
1943375--1943600	21	10.8	21	92	0	371	34	22	23	20	1.97
1943371--1943725	21	16.9	19	78	10	197	34	21	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1943375--1943714	42	8.0	42	86	5	408	34	21	22	21	1.97
1943721--1943765	21	2.1	21	87	0	63	35	31	15	17	1.92
1944209--1944267	19	2.8	21	80	12	59	42	1	5	50	1.34
1952203--1952251	19	2.6	19	100	0	98	20	10	36	32	1.86
1953212--1953257	2	23.0	2	83	16	60	50	0	4	45	1.21
1953739--1953798	23	2.6	23	89	0	93	18	26	26	28	1.98
1954194--1954232	12	3.0	12	85	14	51	38	0	12	48	1.42
1955700--1955742	13	3.3	13	78	12	52	62	0	0	37	0.95
1955818--1955859	20	2.1	20	90	0	66	61	2	0	35	1.09
1956717--1956788	20	3.8	20	76	16	89	66	9	0	23	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11