genome.fa.s8958.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008958.1 Hibiscus syriacus cultivar Beakdansim tig00112289_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2490255

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468089--468131	20	2.3	18	82	17	61	18	16	11	53	1.72
468094--468140	20	2.3	20	89	10	78	17	17	10	55	1.69
468261--468306	20	2.3	20	85	10	67	19	17	8	54	1.68
468371--468805	225	1.9	221	93	5	741	39	7	7	45	1.60
471609--471676	30	2.3	30	97	2	129	50	13	7	29	1.68
473841--473893	19	2.8	19	94	0	88	41	11	13	33	1.80
474631--474655	13	1.9	13	100	0	50	56	12	16	16	1.68
482341--482399	3	21.0	3	86	10	81	33	0	0	66	0.92
482340--482370	16	1.9	16	93	0	53	29	0	0	70	0.87
482341--482399	25	2.4	25	91	5	93	33	0	0	66	0.92
483693--483736	22	2.0	21	83	12	54	25	0	4	70	1.06
483699--483783	37	2.3	38	77	6	93	28	2	2	67	1.16
491251--491470	114	1.9	114	92	0	368	34	15	19	31	1.92
493713--493790	22	3.5	22	89	3	120	34	11	15	38	1.83
494308--494794	164	3.0	165	93	1	809	33	14	13	37	1.86
494841--495154	37	8.5	36	86	3	182	27	24	14	34	1.93
494940--495002	22	3.2	22	64	29	59	28	26	17	26	1.98
494938--495167	37	6.2	37	95	0	388	29	26	14	30	1.95
495319--495383	3	23.0	3	79	17	68	30	0	1	67	1.00
495319--495383	19	3.5	20	85	6	75	30	0	1	67	1.00
495329--495383	22	2.5	22	87	0	74	32	0	1	65	1.03
500668--500725	20	2.7	20	84	10	71	31	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501719--501763	5	9.2	5	90	4	74	40	0	17	42	1.50
505488--505545	7	8.3	7	100	0	116	70	0	29	0	0.87
505812--505860	23	2.1	23	92	0	80	38	8	20	32	1.82
505955--506641	201	3.4	196	83	7	783	30	16	14	39	1.87
509311--509877	200	2.8	199	88	2	832	31	16	14	38	1.88
509821--509930	51	2.1	52	80	9	127	24	19	18	38	1.93
509622--510075	251	1.8	252	86	3	675	31	16	14	37	1.89
512895--513426	201	2.6	202	93	0	895	32	15	14	37	1.88
515423--515488	33	2.0	33	93	0	114	22	46	0	30	1.52
515522--515586	21	3.1	21	86	0	85	18	33	9	38	1.83
517980--518025	20	2.3	19	78	10	56	17	17	13	52	1.75
517764--518239	182	2.6	182	87	3	645	27	15	13	42	1.85
519254--521860	651	4.0	652	94	0	4567	29	22	15	32	1.95
525360--525398	16	2.3	17	82	13	53	38	17	5	38	1.72
528168--528212	22	2.0	22	86	8	63	57	0	0	42	0.98
528289--528340	27	1.9	28	84	7	72	57	0	1	40	1.10
529767--529832	3	22.0	3	81	6	80	59	0	1	39	1.07
530153--531270	116	9.7	116	93	2	1801	30	20	11	37	1.88
531996--532347	93	3.8	93	85	5	478	34	19	16	30	1.94
533350--533418	1	69.0	1	76	0	66	0	11	0	88	0.52
533350--533421	18	3.7	18	81	16	90	0	12	0	87	0.54
533333--533420	41	2.1	41	81	8	99	2	18	1	78	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533353--533415	28	2.2	28	94	0	108	0	12	0	87	0.55
540745--540776	15	2.1	15	94	0	55	46	9	18	25	1.79
544617--544895	117	2.3	121	76	10	264	44	7	6	41	1.58
546262--546330	3	23.0	3	82	5	68	56	0	1	42	1.08
546264--546330	18	3.5	19	82	11	84	56	0	1	41	1.08
546262--546330	21	3.3	20	86	8	93	56	0	1	42	1.08
548736--548790	19	3.2	19	61	28	50	36	12	9	41	1.75
548735--548801	32	2.1	32	100	0	134	32	14	8	43	1.77
550171--550239	31	2.2	31	92	0	111	40	13	8	37	1.75
550180--550246	31	2.2	31	91	0	107	37	16	7	38	1.77
570247--570296	24	2.1	24	85	7	66	56	2	0	42	1.11
573186--573430	71	3.6	69	78	7	279	36	23	11	28	1.90
573257--573378	64	1.9	64	84	0	163	34	23	11	30	1.90
573184--573431	135	1.9	131	86	3	352	35	24	11	28	1.90
576905--576945	14	2.9	14	92	0	55	7	24	9	58	1.55
576915--576952	14	3.1	12	88	11	51	7	26	7	57	1.54
577196--577333	64	2.2	63	84	5	170	29	17	21	31	1.96
577346--577383	20	1.9	20	88	0	58	18	13	36	31	1.89
579972--580053	23	3.6	23	73	17	82	26	23	25	24	2.00
581890--581962	36	2.0	37	83	2	94	24	43	17	13	1.86
583204--583246	21	2.0	21	81	0	50	30	30	25	13	1.94
583226--583377	67	2.2	68	91	3	245	28	28	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583989--584048	23	2.6	23	97	0	111	18	26	31	23	1.97
590092--590134	21	2.0	21	81	0	50	30	30	25	13	1.94
590114--590264	67	2.3	67	92	2	250	29	27	25	16	1.97
590877--590936	23	2.6	23	97	0	111	18	26	31	23	1.97
591673--591745	23	3.3	23	76	3	78	32	21	20	24	1.97
591757--592077	103	3.1	103	97	0	606	36	23	12	27	1.91
592840--592883	20	2.3	19	84	4	52	34	11	4	50	1.59
594763--594827	23	2.8	23	80	0	85	27	24	26	21	1.99
594842--595054	103	2.1	103	95	0	381	36	23	14	26	1.93
599449--599473	7	3.6	7	100	0	50	48	0	12	40	1.40
601414--601594	66	2.8	65	88	3	249	28	17	23	30	1.97
601605--601642	20	1.9	20	94	0	67	18	15	34	31	1.92
607026--607078	23	2.4	21	72	12	52	56	0	1	41	1.10
607969--608022	24	2.3	23	75	9	54	55	1	5	37	1.34
612391--612432	22	1.9	22	90	0	66	19	11	35	33	1.88
612524--612626	30	3.2	30	66	19	82	19	16	20	43	1.88
612503--612646	66	2.2	66	93	0	243	20	18	19	41	1.90
615746--615794	18	2.5	19	80	9	55	24	8	4	63	1.40
621728--622107	189	2.0	189	97	1	726	29	27	6	36	1.82
636622--636714	37	2.6	36	78	13	93	34	0	17	48	1.47
639465--639494	13	2.3	13	94	0	51	53	3	3	40	1.34
640695--640754	23	2.6	23	97	0	111	20	28	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641349--641391	22	2.0	22	90	4	70	16	23	34	25	1.95
650401--650448	25	1.9	25	91	0	78	41	18	22	16	1.90
654856--654884	13	2.2	13	100	0	58	17	44	24	13	1.85
657315--657405	24	3.8	24	82	2	112	25	16	19	38	1.92
659104--659137	10	3.4	10	87	0	50	8	8	8	73	1.25
672784--672814	13	2.4	13	88	0	53	19	16	0	64	1.29
678491--678523	2	16.5	2	100	0	66	51	0	0	48	1.00
679052--679157	49	2.2	49	87	0	149	28	22	14	34	1.93
679300--679409	8	12.9	9	72	10	52	40	0	4	54	1.21
679328--679432	20	5.6	20	68	19	64	45	0	3	50	1.19
679303--679460	74	2.1	74	98	0	307	44	0	3	51	1.19
679300--679409	3	38.7	3	74	10	52	40	0	4	54	1.21
683205--683277	24	3.0	24	95	0	137	30	20	2	46	1.65
683223--683264	13	3.4	13	74	12	52	35	21	0	42	1.53
684848--685276	53	8.1	52	87	3	511	34	6	26	32	1.83
690007--690079	24	3.0	24	88	7	121	31	19	2	46	1.64
691641--692069	53	8.1	52	86	1	545	33	7	26	32	1.84
694808--695165	179	2.0	179	100	0	716	26	26	20	26	1.99
708075--708140	32	2.1	32	100	0	132	42	6	25	25	1.78
714109--714251	30	4.8	30	94	1	243	6	13	49	30	1.66
714960--715172	95	2.2	96	94	0	374	23	8	27	39	1.84
714960--715178	32	6.9	32	72	6	167	23	8	27	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715268--715307	2	20.0	2	100	0	80	50	0	0	50	1.00
715625--715679	20	2.7	21	86	11	78	36	1	1	60	1.18
717713--717780	27	2.6	25	81	9	73	42	19	13	25	1.87
719285--719386	53	1.9	53	93	0	177	40	17	15	26	1.90
720421--720477	21	2.8	21	82	10	66	31	26	12	29	1.92
723010--723051	17	2.4	17	80	11	50	73	2	2	21	1.06
723026--723092	25	2.8	24	77	11	73	73	0	7	19	1.07
724644--724826	84	2.2	84	85	3	242	23	18	25	32	1.97
724936--725022	36	2.4	36	92	0	138	37	16	20	25	1.93
725448--726029	106	5.5	106	88	2	855	21	18	25	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11