genome.fa.s9072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009072.1 Hibiscus syriacus cultivar Beakdansim tig00112503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2600608

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712--11747	2	18.0	2	100	0	72	50	0	0	50	1.00
16298--16331	13	2.6	13	90	0	59	35	0	0	64	0.94
17504--17533	7	4.3	7	100	0	60	53	0	0	46	1.00
19312--19414	32	3.4	29	70	16	77	40	2	2	53	1.31
19310--19452	10	14.6	10	70	21	65	38	2	3	55	1.29
19427--19453	11	2.5	11	100	0	54	29	0	0	70	0.88
22863--22887	6	4.2	6	100	0	50	84	0	16	0	0.63
23737--23775	20	2.1	19	85	9	53	58	7	30	2	1.39
27771--27852	42	2.0	42	90	9	132	21	0	18	59	1.37
28879--28912	2	17.0	2	100	0	68	50	0	0	50	1.00
35741--35782	20	2.1	20	100	0	84	9	4	45	40	1.58
40478--40504	12	2.2	12	100	0	54	29	14	7	48	1.71
45761--46226	51	8.9	51	86	5	493	27	25	16	30	1.96
47531--47555	13	1.9	13	100	0	50	8	20	0	72	1.10
47605--47638	8	4.1	8	88	3	50	2	14	0	82	0.79
57104--57202	45	2.1	47	85	5	130	41	20	10	28	1.84
61856--61901	21	2.1	22	88	4	67	21	6	8	63	1.46
63045--63102	18	3.3	18	72	18	68	29	25	6	37	1.82
63043--63119	34	2.3	34	100	0	154	32	23	7	36	1.83
63063--63118	16	3.4	16	72	18	60	30	23	8	37	1.85
63318--63405	32	2.9	30	77	14	90	26	23	9	40	1.84
64534--64612	32	2.6	30	80	11	97	25	24	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68177--68502	162	2.0	163	99	0	645	31	23	23	20	1.98
76248--76274	9	3.0	9	100	0	54	66	22	11	0	1.22
80123--80212	32	2.8	32	84	1	119	22	20	13	44	1.85
80163--80240	31	2.5	32	80	4	86	23	17	12	46	1.83
81756--81818	31	2.0	33	81	12	78	39	9	3	47	1.52
81619--82197	257	2.3	257	91	3	925	26	12	19	41	1.87
82568--82628	17	3.6	17	95	0	104	29	11	11	47	1.75
82786--82813	3	9.3	3	100	0	56	67	0	0	32	0.91
85042--85103	21	3.0	21	78	0	79	12	25	38	22	1.90
88553--88632	21	3.9	20	80	11	99	17	28	33	20	1.95
88553--88632	41	2.0	41	87	5	117	17	28	33	20	1.95
89048--89108	23	2.7	23	89	0	95	31	26	24	18	1.97
89710--89866	65	2.4	66	78	9	169	22	21	17	38	1.93
93139--93191	22	2.4	22	96	0	97	28	30	26	15	1.96
96810--96946	65	2.1	66	83	2	168	22	20	18	38	1.93
101750--102247	254	2.0	247	87	8	729	41	14	2	41	1.59
102340--102394	3	17.7	3	81	7	65	0	32	1	65	1.03
114294--114346	21	2.5	21	84	0	70	20	26	18	33	1.96
114336--114429	20	4.7	20	79	7	100	38	21	20	20	1.94
114336--114449	61	1.9	60	87	1	165	35	21	20	21	1.96
115019--115067	20	2.5	20	89	0	71	34	22	20	22	1.97
115109--115158	20	2.5	20	90	0	73	18	18	28	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115126--115180	20	2.8	20	91	0	83	10	16	23	49	1.77
115145--115188	20	2.2	20	87	0	61	13	13	20	52	1.74
120767--120848	20	3.9	21	78	7	67	14	23	35	26	1.93
124649--124688	21	1.9	21	85	10	55	35	10	2	52	1.48
132262--132517	138	1.9	138	100	0	512	44	21	8	24	1.80
136301--136381	14	6.1	14	78	15	73	54	19	14	11	1.70
136314--136379	24	2.8	24	88	0	96	53	22	15	9	1.70
137529--137559	15	2.1	15	93	0	53	54	0	0	45	0.99
138506--138570	21	3.1	21	95	0	112	24	23	24	27	2.00
147972--148018	18	2.6	18	89	0	67	19	42	21	17	1.89
148051--148125	29	2.6	29	81	8	98	28	8	18	45	1.78
148835--148892	24	2.4	24	79	0	71	29	10	18	41	1.84
149501--149583	2	41.5	2	97	0	157	51	0	0	48	1.00
149620--149672	24	2.2	24	89	0	79	41	20	9	28	1.83
149634--149690	24	2.4	24	79	2	62	49	19	8	22	1.76
150373--150444	29	2.5	29	86	0	99	50	15	5	29	1.66
150941--151012	24	3.0	24	77	0	81	25	13	19	41	1.88
151174--151228	27	2.0	27	92	0	92	45	12	10	30	1.77
151666--151738	24	3.0	24	79	0	83	38	19	13	28	1.90
152390--152421	10	3.2	10	100	0	64	31	28	31	9	1.88
152463--152526	29	2.2	29	94	0	110	51	15	4	28	1.63
153026--153097	24	3.0	24	81	0	90	25	15	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153115--153157	2	21.5	2	100	0	86	48	0	0	51	1.00
153279--153333	27	2.0	27	92	0	92	45	14	12	27	1.81
153786--153824	2	19.5	2	100	0	78	51	0	0	48	1.00
153840--153912	24	3.0	24	81	0	92	39	20	15	24	1.91
154622--154696	29	2.6	29	93	0	123	46	20	6	26	1.75
155196--155259	24	2.7	24	82	0	83	28	12	18	40	1.87
161439--161513	29	2.6	29	91	0	114	26	5	20	48	1.71
162225--162297	24	3.0	24	78	7	85	24	13	20	41	1.89
162314--162348	2	17.5	2	100	0	70	48	0	0	51	1.00
184461--184518	21	2.5	25	78	15	63	39	34	10	15	1.81
184461--184530	22	3.0	23	74	16	65	40	34	10	15	1.81
185002--185036	10	3.6	10	84	7	54	68	0	31	0	0.90
185001--185043	19	2.3	19	100	0	86	65	0	34	0	0.93
189646--189691	12	3.8	12	82	5	65	78	15	6	0	0.95
190924--191009	36	2.4	35	80	3	109	27	18	15	38	1.91
191068--191314	30	7.6	30	65	16	98	26	19	13	39	1.89
190983--191530	66	8.3	67	84	3	630	26	18	14	40	1.89
191535--191894	131	2.7	131	81	4	355	27	29	16	26	1.97
192082--192129	3	16.3	3	95	4	89	31	0	0	68	0.90
193766--193819	21	2.5	22	84	6	74	18	16	25	38	1.92
194236--194264	15	2.0	15	93	6	51	20	0	13	65	1.26
194553--194609	25	2.3	25	100	0	114	36	7	21	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203098--203139	12	3.5	12	86	0	57	19	0	52	28	1.46
203098--203146	24	2.0	24	88	0	71	16	2	51	30	1.56
212041--212096	21	2.7	21	91	0	85	30	25	17	26	1.97
214247--214317	30	2.4	30	87	0	97	25	23	7	43	1.79
215654--215763	55	2.0	56	94	1	195	43	18	10	28	1.82
225893--226080	96	1.9	98	95	2	344	38	16	10	35	1.82
226226--226267	18	2.4	18	80	4	50	59	0	11	28	1.33
227924--227958	2	17.5	2	93	0	61	51	2	0	45	1.16
230918--230945	2	14.0	2	100	0	56	50	0	0	50	1.00
232319--232411	21	4.5	21	78	4	100	39	18	24	17	1.91
232400--232514	20	5.7	19	76	11	77	34	23	17	24	1.96
232319--232411	41	2.3	41	100	0	186	39	18	24	17	1.91
232397--232474	41	1.9	41	83	0	102	38	21	16	23	1.93
232682--232725	22	2.0	22	90	0	70	20	43	15	20	1.88
232988--233026	20	2.0	20	89	0	60	12	15	20	51	1.76
234347--234391	18	2.5	18	88	0	72	26	44	15	13	1.83
234630--234656	13	2.1	13	100	0	54	25	14	22	37	1.93
234903--234958	20	2.8	20	81	2	69	39	21	23	16	1.92
234947--235036	14	5.9	14	73	19	81	48	22	17	11	1.78
234931--235053	32	3.8	33	94	2	214	47	21	18	12	1.80
235070--235126	14	3.8	14	78	17	69	8	17	26	47	1.77
235065--235142	32	2.4	32	97	0	147	10	19	24	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235127--235181	20	2.8	19	89	5	83	16	25	23	34	1.95
237044--237096	14	3.9	13	76	9	52	33	0	18	47	1.49
237199--237266	19	3.8	19	85	14	101	47	17	22	13	1.82
237285--237342	20	2.9	20	89	0	89	15	20	24	39	1.91
238391--238449	24	2.5	24	82	0	73	28	16	18	35	1.93
238624--238648	12	2.1	12	100	0	50	72	0	28	0	0.86
240941--241032	19	5.4	19	66	24	78	43	19	20	16	1.88
240941--241067	33	3.8	33	86	4	184	42	19	22	14	1.88
240942--241074	66	2.0	66	94	0	230	41	19	22	16	1.90
241067--241109	20	2.2	20	87	4	61	16	18	23	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13