genome.fa.s9072.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009072.1 Hibiscus syriacus cultivar Beakdansim tig00112503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2600608

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640788--640827	16	2.5	16	88	8	55	57	5	7	30	1.48
644440--644479	3	13.3	3	83	0	53	30	0	30	40	1.57
644478--644510	3	11.0	3	100	0	66	66	0	0	33	0.92
645678--645710	2	16.5	2	100	0	66	48	0	0	51	1.00
646227--646277	2	26.0	2	96	4	95	49	0	0	50	1.00
646413--647115	227	3.1	226	89	1	1032	30	16	14	38	1.88
649270--649301	15	2.0	17	88	11	50	46	6	15	31	1.71
651217--651250	18	1.9	18	88	5	52	41	0	0	58	0.98
654572--654612	21	2.0	21	90	4	66	14	12	34	39	1.84
654642--654685	21	2.1	21	100	0	88	34	13	25	27	1.93
654642--654699	21	2.8	21	89	5	73	31	13	27	27	1.94
658276--658327	24	2.1	26	89	7	81	15	13	17	53	1.72
658613--658643	14	2.2	14	94	0	53	3	12	25	58	1.50
659233--659273	21	2.0	21	90	4	66	17	14	31	36	1.90
660688--660727	21	1.9	21	89	0	62	20	15	42	22	1.88
662996--663273	138	2.0	138	92	0	466	38	7	16	37	1.78
664541--664691	39	3.9	39	76	6	126	32	13	15	38	1.87
665649--665708	29	2.0	32	83	9	81	35	5	3	56	1.37
668790--668837	23	2.1	23	88	0	69	35	12	18	33	1.89
669220--669271	23	2.3	22	90	6	77	44	19	1	34	1.62
669230--669292	23	2.7	23	90	0	90	38	19	6	36	1.77
669696--669782	39	2.2	39	95	0	156	17	13	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669773--669809	17	2.2	17	100	0	74	24	10	32	32	1.90
670058--670094	18	2.1	18	89	0	56	51	10	5	32	1.60
670343--670393	25	2.0	25	92	0	84	39	19	7	33	1.81
670658--670709	23	2.3	22	90	6	77	44	19	1	34	1.62
670668--670730	23	2.7	23	90	0	90	38	19	6	36	1.77
671089--671140	23	2.3	22	90	6	77	44	19	1	34	1.62
671099--671161	23	2.7	23	90	0	90	38	19	6	36	1.77
670425--671260	431	1.9	427	97	0	1591	39	12	8	39	1.73
673739--674082	184	1.9	184	93	0	589	33	16	14	35	1.89
675543--675629	3	29.0	3	77	0	84	24	34	5	35	1.79
675543--675644	18	5.7	18	79	0	87	22	34	6	36	1.81
675551--675641	42	2.2	42	91	0	146	21	35	7	35	1.83
677098--678391	199	6.5	198	98	0	2421	31	16	15	36	1.90
678229--678555	163	2.0	163	96	1	602	34	16	13	35	1.88
678032--678753	361	2.0	360	97	0	1365	32	16	14	35	1.89
678391--678827	198	2.2	201	95	1	790	30	16	15	37	1.90
678946--678994	19	2.6	19	93	0	80	57	10	2	30	1.43
680787--680852	33	2.0	33	85	5	89	24	43	1	30	1.63
683157--683199	20	2.3	18	85	14	61	20	16	11	51	1.75
683162--683208	20	2.4	19	82	10	67	19	17	10	53	1.72
683330--683375	20	2.3	20	89	10	76	17	17	10	54	1.70
683423--684100	229	3.0	229	97	0	1261	39	7	7	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685156--685201	24	1.9	24	82	8	58	71	2	0	26	0.97
686902--687002	28	3.6	28	91	4	159	39	3	0	55	1.25
686902--687030	28	4.5	29	86	7	140	39	5	2	52	1.37
687028--687162	29	4.5	28	81	14	137	56	0	5	37	1.24
687046--687157	58	2.0	54	88	10	163	56	0	5	38	1.22
687714--687785	20	3.5	20	88	1	99	41	18	22	18	1.90
687774--687827	20	2.7	20	97	0	99	31	24	18	25	1.97
687771--687887	61	1.9	61	82	0	144	33	23	17	25	1.96
687838--687888	20	2.5	20	90	6	68	25	25	21	27	1.99
688444--688485	19	2.2	19	86	0	57	50	28	16	4	1.66
688481--688573	19	5.1	19	72	15	79	11	23	19	45	1.83
688486--688549	33	1.9	33	93	0	110	10	23	21	43	1.84
690026--690156	63	2.1	63	97	0	244	21	17	36	24	1.94
690781--690847	21	3.2	21	66	6	55	23	35	20	19	1.95
690729--690847	42	2.8	42	81	5	107	22	36	18	22	1.95
692205--692240	14	2.6	14	95	0	63	30	0	25	44	1.54
692381--692451	33	2.2	33	82	5	81	18	23	19	38	1.93
692400--692458	19	3.4	19	73	22	74	13	22	18	45	1.84
692723--692760	20	1.9	20	94	0	67	39	21	21	18	1.93
692783--692856	19	4.5	16	83	16	66	13	20	18	47	1.82
692798--692846	19	2.6	19	100	0	98	14	20	16	48	1.80
692944--692980	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694849--694904	20	2.9	19	86	5	85	35	23	25	16	1.94
694904--694961	14	3.9	14	77	16	62	50	25	15	8	1.73
694888--694966	32	2.4	33	93	2	133	48	24	17	10	1.78
694973--695068	19	5.7	18	67	25	66	13	18	20	46	1.83
694995--695052	14	3.9	14	75	16	62	12	17	22	48	1.80
694978--695068	32	2.8	33	86	9	141	13	17	20	48	1.81
695062--695107	20	2.3	20	88	0	65	15	21	26	36	1.93
695583--695627	18	2.5	18	88	0	72	13	15	44	26	1.83
696947--697005	20	3.0	20	87	0	73	42	22	18	16	1.89
697031--697081	19	2.7	19	93	0	93	11	21	25	41	1.87
697287--697330	22	2.0	22	95	0	79	18	15	45	20	1.85
697518--697610	20	4.7	20	93	0	150	26	19	27	25	1.99
697533--697672	41	3.4	42	80	4	135	23	20	25	31	1.98
697646--697733	20	4.3	21	78	4	90	17	22	18	42	1.89
697580--697714	41	3.3	40	79	6	119	20	20	20	38	1.94
697660--697733	20	3.7	20	80	3	94	17	21	18	41	1.90
697644--697733	41	2.2	41	97	0	171	17	23	17	41	1.90
699870--699898	15	1.9	15	100	0	58	13	3	0	82	0.79
701912--702099	100	1.9	100	92	2	313	45	3	3	46	1.38
704954--705007	26	2.0	27	82	10	67	40	0	0	59	0.98
711979--712402	81	4.8	90	85	9	460	38	14	8	38	1.77
712125--712336	26	7.9	26	67	16	110	36	16	9	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712302--712470	66	2.5	67	86	5	227	38	14	8	38	1.77
712380--712563	95	2.0	93	86	6	255	39	16	8	35	1.79
712055--712630	161	3.6	161	80	9	676	38	15	8	37	1.78
721785--721818	17	2.0	17	88	0	50	32	5	5	55	1.48
723529--723582	22	2.5	22	84	0	81	37	14	11	37	1.82
729651--729696	15	3.0	15	83	3	56	6	8	2	82	0.91
730885--731213	39	8.5	39	90	1	491	34	18	16	31	1.93
730885--731213	155	2.1	155	91	0	523	34	18	16	31	1.93
731139--731203	22	3.2	22	62	28	52	30	18	13	36	1.90
731297--731410	42	2.7	41	80	6	131	31	22	20	25	1.98
731465--731794	52	6.1	52	73	12	254	42	18	9	30	1.81
731465--731795	109	3.0	110	86	1	468	42	18	9	30	1.81
734189--734519	45	7.4	45	93	0	545	37	11	22	29	1.89
735457--735490	16	2.1	16	94	0	59	2	20	0	76	0.92
739817--739865	26	1.9	26	83	4	64	16	6	4	73	1.19
741927--742814	81	11.0	81	86	1	1167	35	11	22	30	1.89
741927--743670	243	7.3	242	82	6	2005	35	11	22	30	1.90
742687--742952	138	1.9	138	92	0	442	36	12	21	29	1.91
742606--743033	219	2.0	219	89	0	667	37	11	21	29	1.89
742823--743670	81	10.5	81	89	1	1207	35	11	23	30	1.90
749757--749784	13	2.2	13	100	0	56	42	25	7	25	1.80
750249--750367	59	2.0	59	95	3	213	48	10	10	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751556--751657	35	2.9	33	81	9	114	27	13	5	52	1.63
751952--751990	19	2.1	18	85	4	51	41	12	12	33	1.82
753066--753265	33	6.1	33	95	0	337	19	35	16	29	1.94
755728--755791	31	2.1	31	82	11	78	53	10	0	35	1.36
756899--757222	161	2.0	161	100	0	648	21	20	20	37	1.94
757852--757963	12	9.5	11	78	13	93	44	1	3	50	1.29
757885--757949	2	32.5	2	90	6	105	49	0	1	49	1.10
762004--762028	13	1.9	13	100	0	50	64	20	8	8	1.46
762993--763194	95	2.1	95	92	0	332	35	15	16	32	1.91
764316--764492	85	2.1	86	88	1	257	29	25	19	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13