genome.fa.s9072.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009072.1 Hibiscus syriacus cultivar Beakdansim tig00112503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2600608

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241095--241128	14	2.4	14	85	0	50	8	23	20	47	1.78
241250--241286	14	2.6	14	91	0	65	45	24	0	29	1.53
242642--242708	21	3.2	21	68	4	55	19	20	35	23	1.95
242642--242764	42	2.9	41	80	7	113	22	17	36	22	1.95
244790--244888	33	3.0	33	89	1	144	39	26	23	11	1.88
244765--244930	20	9.1	19	73	16	127	43	21	22	12	1.86
244926--244992	19	3.5	19	85	2	89	10	16	25	47	1.78
245507--245559	20	2.7	20	93	0	88	26	20	28	24	1.99
245528--245622	41	2.3	41	80	7	104	22	18	22	36	1.95
245672--245725	21	2.6	21	96	0	99	29	31	16	22	1.96
245672--245733	21	3.0	21	83	4	72	33	30	14	20	1.93
249154--249195	2	21.0	2	100	0	84	50	0	0	50	1.00
249910--249978	31	2.3	30	82	7	86	47	23	11	17	1.80
253402--253431	13	2.3	13	94	0	51	36	6	13	43	1.70
253559--253604	2	23.0	2	100	0	92	50	0	0	50	1.00
257713--257749	13	2.9	14	80	19	53	75	5	13	5	1.15
257821--257958	69	2.0	69	91	0	222	37	23	13	24	1.92
258882--258970	32	2.8	32	87	0	133	28	13	26	31	1.94
259544--259861	106	3.0	106	85	0	413	33	22	19	24	1.97
260264--260418	37	4.4	37	67	19	116	29	19	13	37	1.90
260119--260297	87	2.1	87	93	0	304	32	17	13	35	1.89
260206--260445	102	2.4	102	92	0	390	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260346--260418	37	2.0	37	91	0	119	26	19	15	39	1.90
260564--260680	36	3.2	36	83	9	148	26	19	14	39	1.90
260667--260752	37	2.4	34	88	5	118	38	24	8	29	1.84
261911--262033	47	2.6	47	96	2	219	34	2	1	60	1.19
262025--262085	16	3.9	14	73	26	52	19	1	0	78	0.83
262017--262079	31	2.0	33	84	12	87	23	3	0	73	0.98
262027--262085	21	3.0	20	76	18	61	20	1	0	77	0.85
262025--262086	14	4.5	13	79	16	63	19	1	0	79	0.82
262023--262128	49	2.2	49	80	11	112	20	4	0	74	0.99
262148--262192	16	2.8	16	79	0	54	17	8	0	73	1.08
263097--263144	17	2.9	16	78	12	53	27	2	0	70	0.98
263321--263368	22	2.1	23	85	11	64	52	4	8	35	1.51
277396--277438	22	2.0	22	86	9	61	11	16	4	67	1.38
290465--290570	43	2.3	48	82	11	123	34	1	10	52	1.46
300637--300704	13	4.9	14	67	15	52	25	0	19	55	1.43
300637--300717	42	1.9	42	85	5	110	23	0	19	56	1.42
301173--301197	12	2.1	12	100	0	50	48	0	0	52	1.00
304631--304746	3	38.7	3	92	0	196	62	0	2	34	1.09
305064--305593	113	4.7	113	93	1	881	28	19	14	37	1.91
306342--306804	82	5.6	83	97	1	833	36	22	13	27	1.92
307943--307984	8	4.8	9	80	14	52	0	9	4	85	0.72
307943--307982	18	2.2	18	90	0	62	0	7	5	87	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307943--307992	18	2.7	18	81	9	57	0	12	4	84	0.76
320818--320936	3	39.7	3	91	0	193	62	0	2	35	1.09
323998--324045	3	16.3	3	86	4	71	62	2	0	35	1.07
324206--324497	40	6.9	40	73	12	167	27	17	30	25	1.97
324383--324497	40	2.9	40	97	0	212	24	18	33	24	1.97
324280--324605	173	1.9	174	89	1	512	24	18	30	26	1.98
324975--325070	36	2.7	36	79	10	108	40	12	15	31	1.85
325315--325352	15	2.5	15	91	0	58	50	7	21	21	1.74
325341--325415	31	2.4	30	82	8	80	40	13	14	32	1.85
325448--325527	40	2.0	40	87	4	117	38	12	18	30	1.88
325509--325633	64	2.0	64	88	1	189	44	12	13	30	1.80
325531--325754	120	1.9	119	81	8	276	42	12	14	30	1.83
325801--326081	67	4.4	64	84	7	302	44	13	12	30	1.80
325866--325991	37	3.6	38	69	23	123	44	11	12	31	1.78
325855--326081	67	3.5	65	87	5	325	44	12	11	30	1.79
326043--326193	27	5.4	27	83	5	160	47	15	9	27	1.77
326058--326190	29	4.8	28	84	7	173	45	16	10	27	1.80
326058--326193	56	2.4	56	83	7	179	46	16	10	27	1.79
326432--326529	36	2.8	35	82	3	126	34	12	18	34	1.88
326433--326551	36	3.4	36	81	6	120	36	12	21	30	1.90
326546--326735	105	1.8	105	88	2	292	37	11	19	31	1.87
327207--327241	4	9.2	4	87	12	56	25	0	25	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328421--328458	11	3.4	11	89	7	58	5	13	10	71	1.30
328416--328463	12	3.9	12	81	8	53	4	12	12	70	1.29
329065--329158	46	2.1	45	85	2	125	37	9	26	26	1.87
334388--334432	3	15.3	3	86	4	65	62	2	0	35	1.08
336737--336794	24	2.5	24	94	2	100	31	0	8	60	1.27
338021--338348	20	16.3	19	80	10	282	39	25	19	16	1.92
338082--338341	40	6.4	39	89	8	330	36	27	19	16	1.93
338023--338342	60	5.3	59	82	12	330	38	25	19	16	1.92
338021--338348	40	8.1	40	85	7	316	39	25	19	16	1.92
338444--338493	6	8.5	6	97	2	93	32	52	16	0	1.44
338988--339092	6	18.5	6	99	1	168	0	17	53	29	1.44
351694--351756	22	2.9	23	81	11	71	69	1	4	23	1.16
351695--351795	22	4.4	21	78	15	69	67	0	3	27	1.15
351674--351838	22	7.5	22	67	23	55	67	1	4	26	1.17
352022--352069	23	2.0	24	84	11	64	70	0	2	27	0.98
352067--352099	2	16.5	2	100	0	66	51	0	0	48	1.00
352494--352595	37	2.8	37	86	0	132	32	12	14	40	1.84
353345--354621	106	12.0	106	91	1	1925	22	17	25	34	1.96
354824--354871	24	2.0	24	95	0	87	31	25	18	25	1.98
355602--355656	22	2.5	22	100	0	110	23	12	27	36	1.91
358355--358403	15	3.2	15	83	13	64	81	6	12	0	0.86
358357--358412	16	3.5	15	77	20	60	80	7	12	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358353--358412	18	3.3	18	77	11	61	80	8	11	0	0.92
360022--360548	106	5.0	106	92	0	876	34	25	17	22	1.95
360464--360632	84	2.0	84	96	0	311	33	24	17	24	1.96
360548--361063	106	4.9	106	92	0	836	33	24	18	23	1.97
360252--361063	296	2.7	302	91	4	1258	33	24	17	23	1.96
360146--360950	402	2.0	402	93	0	1376	34	25	17	22	1.96
360040--361044	508	2.0	508	93	0	1733	34	25	17	22	1.96
361810--361914	37	2.8	37	80	0	129	40	14	11	33	1.81
362618--362731	24	4.4	28	74	20	81	30	3	0	64	1.16
362642--362729	24	3.7	23	77	13	88	31	4	0	63	1.14
362647--362720	25	2.9	27	84	11	86	32	4	0	63	1.13
362603--362732	28	4.8	26	73	18	81	30	3	0	65	1.16
362808--362863	5	11.2	5	79	7	60	21	7	0	71	1.09
363363--363439	35	2.2	35	85	0	100	33	2	23	40	1.68
364424--364449	6	4.3	6	100	0	52	0	65	0	34	0.93
368444--368471	6	4.7	6	100	0	56	32	0	50	17	1.47
373977--374420	221	2.0	223	99	0	874	38	13	11	36	1.81
396774--396805	15	2.1	15	94	0	55	6	25	15	53	1.65
403843--403874	2	16.0	2	100	0	64	50	0	0	50	1.00
414002--414834	6	139.8	6	98	1	1624	50	16	0	33	1.46
415651--415694	17	2.6	17	85	0	52	75	2	0	22	0.92
420746--420787	19	2.3	19	79	4	50	61	4	2	30	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424072--424108	18	2.1	18	90	10	58	67	8	0	24	1.17
425252--425334	40	2.1	40	100	0	166	36	19	9	34	1.84
427745--427791	17	2.8	17	100	0	94	21	29	23	25	1.99
430320--430460	11	12.4	11	79	6	138	33	21	20	24	1.97
430326--430461	34	4.0	34	85	7	161	33	21	20	25	1.97
430326--430461	23	6.0	23	83	4	143	33	21	20	25	1.97
431060--431109	20	2.6	18	79	17	55	54	12	20	14	1.71
430913--431508	180	3.3	181	88	1	856	40	12	18	28	1.87
433410--433465	24	2.4	23	80	8	69	46	0	1	51	1.11
433859--433944	21	4.1	21	93	0	136	41	11	31	15	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13