genome.fa.s9072.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009072.1 Hibiscus syriacus cultivar Beakdansim tig00112503_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2600608

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764576--765082	85	6.0	85	86	1	613	36	21	16	25	1.94
764572--765151	85	6.8	85	84	2	554	36	20	16	26	1.94
764572--765151	170	3.4	169	80	3	612	36	20	16	26	1.94
764615--765162	255	2.1	255	81	3	620	36	20	15	27	1.93
766010--766041	10	3.4	10	83	16	50	90	0	0	9	0.45
766010--766059	18	2.7	19	87	6	59	82	4	0	14	0.82
768083--768172	2	48.5	2	67	22	54	48	3	4	43	1.39
768081--768172	7	13.0	7	73	14	73	48	3	4	43	1.38
768081--768139	20	3.0	20	79	13	70	49	0	5	45	1.24
770611--771109	272	1.8	273	84	5	697	40	8	7	43	1.64
778911--778953	22	2.0	22	85	0	59	39	9	6	44	1.64
778993--779801	198	4.1	197	86	3	1015	48	9	4	37	1.58
779145--779446	98	3.1	96	68	17	249	48	9	4	37	1.57
779656--779836	32	5.7	32	70	14	97	51	8	3	35	1.51
783285--783323	17	2.2	17	86	9	51	69	2	0	28	1.02
784848--784891	20	2.2	20	88	8	63	63	0	0	36	0.95
784856--784902	24	1.9	24	86	4	67	68	0	0	31	0.90
785224--785332	31	3.3	31	71	14	110	24	11	12	50	1.74
785206--785340	68	2.0	68	95	0	243	25	12	13	48	1.78
785706--785749	17	2.6	17	77	0	52	59	0	0	40	0.98
787600--787649	27	1.9	25	92	8	82	40	30	12	18	1.86
787639--787737	34	2.8	35	90	7	155	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787716--787741	2	13.0	2	100	0	52	50	0	0	50	1.00
797389--797413	6	4.2	6	100	0	50	0	16	48	36	1.46
797506--797583	20	3.9	20	83	3	95	44	20	21	12	1.85
797572--797644	21	3.5	21	92	0	119	28	26	15	30	1.96
797552--797644	42	2.2	42	86	1	125	32	24	17	25	1.97
802321--802372	15	3.5	15	91	0	77	5	15	67	11	1.40
802711--802736	12	2.2	12	100	0	52	26	0	23	50	1.50
802665--802795	70	1.9	70	90	3	210	35	9	14	40	1.79
804089--804119	13	2.3	14	94	5	55	38	0	3	58	1.15
806210--806285	3	26.0	3	94	5	138	32	0	0	67	0.91
809779--810054	142	2.0	138	97	2	516	30	15	23	30	1.96
811880--811911	15	2.1	15	94	0	55	25	18	9	46	1.79
820609--821149	92	5.9	92	95	0	938	26	12	23	37	1.90
821807--822568	225	3.4	223	91	2	1106	38	15	18	28	1.91
821807--822568	113	6.9	113	86	2	967	38	15	18	28	1.91
822394--822721	149	2.2	149	86	2	431	39	14	21	25	1.90
822543--822844	113	2.7	113	84	2	396	37	14	19	27	1.92
822286--822826	262	2.1	261	88	1	796	39	14	19	26	1.90
823068--823102	3	12.0	3	93	6	63	31	0	0	68	0.90
825441--825487	23	2.0	23	92	8	78	57	12	12	17	1.65
826021--826064	17	2.5	17	81	3	61	31	2	0	65	1.05
826430--826502	24	3.0	24	84	4	58	10	13	24	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826440--826496	14	4.4	14	76	17	59	8	12	24	54	1.65
826441--826515	24	3.1	24	88	3	89	12	10	21	56	1.66
827239--827313	10	7.7	10	69	21	61	9	12	21	57	1.62
827245--827309	16	4.1	16	95	0	121	7	12	23	56	1.61
827379--827411	16	2.1	16	100	0	66	6	12	24	57	1.57
829170--829203	13	2.8	12	86	8	50	41	41	0	17	1.50
829170--829205	6	5.8	6	87	6	54	38	44	0	16	1.48
840197--840243	21	2.2	22	82	17	55	27	6	2	63	1.30
840202--840243	21	1.9	21	85	9	57	30	4	2	61	1.29
842849--842893	3	15.0	3	100	0	90	33	33	0	33	1.58
842892--842925	3	11.3	3	100	0	68	35	0	0	64	0.94
845452--845481	10	3.0	10	90	0	51	56	13	0	30	1.37
845657--845726	20	3.5	20	100	0	140	48	10	5	35	1.60
845667--845723	10	5.5	11	68	16	50	52	10	3	33	1.53
849516--849559	20	2.2	20	83	0	52	38	34	9	18	1.82
850840--850892	27	2.0	27	85	14	74	67	11	13	7	1.40
851475--851636	66	2.4	63	75	16	141	17	7	2	72	1.18
851734--851766	3	11.0	3	93	0	57	30	3	0	66	1.06
852131--852178	16	3.1	16	88	8	64	16	10	0	72	1.10
852142--852183	5	8.2	5	89	5	66	19	4	0	76	0.96
852181--852208	5	5.6	5	100	0	56	0	17	17	64	1.30
852206--852255	5	10.2	5	79	12	50	16	0	6	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852205--852255	14	3.9	14	82	15	72	15	0	7	76	1.00
852206--852255	25	2.0	25	96	0	91	16	0	6	78	0.95
859020--859127	54	2.0	54	100	0	216	42	14	22	20	1.88
862288--862409	62	2.0	63	85	8	169	54	10	22	13	1.69
863250--863338	35	2.5	35	100	0	178	42	25	12	19	1.86
864556--864608	27	2.0	26	89	7	81	69	11	11	7	1.35
865269--865306	17	2.1	19	85	9	53	18	10	2	68	1.30
865328--865387	25	2.4	25	80	2	75	10	6	5	78	1.08
865328--865465	26	5.4	24	73	15	82	16	5	3	73	1.16
865399--865475	5	14.2	5	77	20	75	19	2	2	75	1.04
865399--865482	16	5.1	15	73	20	62	17	3	2	76	1.04
865402--865475	21	3.4	21	80	16	71	18	2	2	75	1.04
865283--865453	73	2.4	72	76	14	176	19	7	2	71	1.20
865399--865465	26	2.5	26	88	9	91	17	2	2	76	1.05
865435--865481	17	2.7	17	75	15	51	19	4	2	74	1.09
865510--865536	2	13.5	2	100	0	54	48	0	0	51	1.00
865594--865639	10	4.4	11	75	8	51	43	0	0	56	0.99
865885--865937	5	11.0	5	86	8	65	18	0	5	75	0.99
865885--865914	14	2.1	14	100	0	60	20	0	0	80	0.72
865885--865937	19	2.8	18	86	8	70	18	0	5	75	0.99
865885--865937	24	2.2	24	89	0	79	18	0	5	75	0.99
869892--869948	24	2.4	24	77	11	64	14	24	10	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870811--870940	66	2.0	66	100	0	260	40	13	8	38	1.74
873591--873651	32	1.9	32	83	12	81	50	14	9	24	1.73
887661--887734	20	3.7	20	88	0	112	40	9	24	25	1.85
900896--900931	17	2.1	17	94	0	63	41	0	16	41	1.48
908900--909141	126	1.9	126	90	0	385	28	25	16	29	1.97
913769--913820	12	4.4	12	80	4	61	80	3	3	11	0.97
913769--913828	22	2.7	23	75	15	63	80	5	3	11	1.00
913830--913895	27	2.4	27	78	14	66	63	3	3	30	1.24
913971--914009	2	19.5	2	100	0	78	51	0	0	48	1.00
914165--914189	2	12.5	2	100	0	50	52	0	0	48	1.00
914397--914437	11	3.6	11	87	6	55	65	4	4	24	1.32
914455--914506	25	2.0	28	88	11	83	69	1	0	28	0.99
914521--914565	12	3.7	12	81	3	54	66	0	4	28	1.11
914577--914628	2	26.0	2	100	0	104	50	0	0	50	1.00
915171--915274	37	2.8	37	89	0	154	29	16	13	40	1.87
916006--917792	106	16.9	106	90	1	2640	23	18	24	33	1.96
918181--918217	18	2.0	19	89	5	58	45	32	2	18	1.64
919271--919309	17	2.2	18	86	9	53	2	7	7	82	0.94
919271--919343	15	5.1	14	76	17	60	2	12	8	76	1.10
923662--923721	12	4.9	12	75	18	52	78	3	3	15	1.01
923740--923787	26	2.0	25	84	12	64	62	0	4	33	1.14
924245--924285	11	3.6	11	87	6	55	65	4	4	24	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924353--924397	12	3.7	12	81	3	54	66	0	4	28	1.11
924970--925074	37	2.8	37	88	0	156	29	15	15	40	1.88
929093--929157	31	2.1	31	100	0	130	52	13	3	30	1.56
938209--938295	35	2.5	34	78	12	88	56	10	8	25	1.60
940390--940611	111	2.0	111	95	0	399	44	9	7	38	1.66
940673--940713	18	2.3	18	91	4	66	63	0	7	29	1.21
945998--946023	13	2.0	13	100	0	52	69	0	0	30	0.89
946363--946404	16	2.7	15	89	10	59	76	0	0	23	0.79
946369--946399	12	2.7	11	90	9	53	77	0	0	22	0.77
947383--948457	84	13.0	84	77	6	1010	24	19	25	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13