genome.fa.s9074.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765146--1765185	11	3.6	11	96	0	71	27	22	25	25	2.00
1765170--1765206	17	2.2	17	95	0	65	24	32	18	24	1.97
1766481--1766525	24	2.0	22	82	8	54	66	6	6	20	1.38
1775117--1775158	20	2.1	20	86	0	57	23	28	16	30	1.96
1793482--1793620	64	2.2	64	100	0	278	32	23	18	25	1.97
1793482--1793661	64	2.8	64	91	1	254	30	21	22	25	1.99
1793635--1793706	20	3.5	20	75	15	65	31	18	25	25	1.97
1795070--1795171	32	3.2	32	81	10	122	27	19	20	32	1.97
1800023--1800097	32	2.3	32	88	4	116	28	17	21	33	1.96
1801046--1801135	27	3.4	27	81	7	112	31	5	21	42	1.75
1801142--1801224	25	3.3	25	81	0	85	36	8	14	40	1.76
1801381--1801419	20	2.0	20	100	0	78	30	5	15	48	1.66
1801381--1801425	20	2.4	19	92	7	74	31	6	17	44	1.75
1802020--1802092	23	3.2	23	94	0	128	31	5	26	36	1.79
1804719--1804782	31	2.0	32	84	3	85	32	43	1	21	1.62
1805891--1805956	29	2.2	29	86	7	89	50	0	1	48	1.10
1806004--1806107	31	3.4	32	81	9	101	41	0	5	51	1.32
1806035--1806116	31	2.7	32	83	9	100	45	1	2	51	1.22
1807714--1807758	15	2.9	15	86	6	63	73	0	2	24	0.95
1807812--1807855	22	2.0	22	81	4	52	79	0	9	11	0.93
1808883--1808917	18	1.9	18	88	11	54	77	0	2	20	0.90
1809023--1809164	36	3.7	38	81	4	162	40	11	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1809190--1809219	14	2.1	14	93	0	51	46	10	6	36	1.64
1810303--1810345	17	2.4	18	85	11	54	60	2	0	37	1.10
1811206--1811303	31	3.2	31	77	8	94	47	4	4	43	1.41
1811489--1811518	3	10.0	3	100	0	60	66	0	0	33	0.92
1818343--1818430	25	3.5	26	76	18	80	52	2	2	43	1.26
1818358--1818433	25	3.1	23	81	12	82	50	2	2	44	1.30
1819181--1819251	31	2.3	31	85	0	88	52	8	4	35	1.51
1820140--1820197	2	29.0	2	100	0	116	50	0	0	50	1.00
1821959--1822002	19	2.2	21	88	8	65	36	0	13	50	1.42
1829699--1829760	32	1.9	32	83	6	81	24	0	11	64	1.26
1830393--1830441	19	2.6	18	81	9	62	20	4	2	73	1.10
1830561--1830613	21	2.5	22	87	6	81	43	11	11	33	1.76
1830569--1830614	21	2.2	21	96	0	83	47	10	13	28	1.76
1831477--1831597	59	2.1	59	90	3	190	37	22	15	24	1.93
1835963--1836083	59	2.1	59	95	0	215	34	23	17	24	1.96
1839973--1840028	24	2.3	24	93	0	103	37	14	17	30	1.90
1840788--1840826	20	1.9	20	89	5	60	51	12	20	15	1.76
1840755--1840823	28	2.5	28	83	4	77	47	15	18	17	1.82
1840787--1840832	20	2.2	21	80	3	58	52	10	19	17	1.74
1843631--1843687	2	28.5	2	100	0	114	50	0	0	49	1.00
1843775--1843916	54	2.7	53	85	2	178	61	11	10	16	1.56
1845618--1845700	29	2.8	29	90	1	130	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850387--1850469	29	2.8	29	88	1	121	42	12	13	32	1.81
1854175--1854315	45	3.2	44	76	8	142	39	9	13	38	1.77
1860126--1860177	20	2.6	20	100	0	104	34	11	23	30	1.90
1860237--1860291	20	2.8	20	97	0	101	25	29	18	27	1.98
1860862--1860887	2	13.0	2	100	0	52	50	0	0	50	1.00
1862258--1862293	18	2.1	17	89	5	54	69	0	0	30	0.89
1868469--1868525	3	19.7	3	82	13	75	38	0	0	61	0.96
1868466--1868523	27	2.1	27	96	0	107	39	0	0	60	0.97
1869472--1869536	34	1.9	34	83	0	85	32	16	6	44	1.73
1869951--1869991	16	2.5	17	84	4	57	34	4	0	60	1.18
1879382--1879407	13	2.0	13	100	0	52	30	7	46	15	1.74
1880517--1880545	10	2.7	11	89	10	51	89	0	10	0	0.48
1880900--1880948	19	2.8	17	84	9	64	36	8	6	48	1.58
1881241--1881693	115	4.0	115	95	0	766	34	14	19	31	1.92
1881241--1881693	229	2.0	229	93	0	773	34	14	19	31	1.92
1882664--1882962	116	2.7	110	85	9	390	38	14	19	27	1.91
1882664--1882928	115	2.3	115	83	7	353	39	13	19	27	1.89
1883008--1883106	38	2.6	38	91	3	162	53	9	19	18	1.70
1883347--1883398	3	17.7	3	88	11	81	32	0	0	67	0.91
1884903--1884943	16	2.5	17	84	4	57	34	4	0	60	1.18
1885138--1885193	29	2.0	29	85	3	78	48	1	0	50	1.11
1887448--1887501	24	2.3	24	81	15	60	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1889600--1890157	118	4.7	117	80	5	541	27	19	15	37	1.91
1890224--1890355	44	3.0	44	77	4	149	33	15	21	29	1.94
1890462--1890504	22	2.0	22	90	0	68	25	11	32	30	1.91
1892011--1892059	20	2.5	20	87	12	66	24	14	28	32	1.94
1896404--1896482	40	1.9	41	89	7	124	30	20	11	37	1.88
1896396--1896507	40	2.7	43	82	5	115	30	22	12	34	1.91
1898003--1898051	22	2.2	22	82	17	66	26	24	20	28	1.99
1898013--1898051	12	3.4	12	79	13	55	28	23	20	28	1.99
1898012--1898062	22	2.3	22	93	0	93	25	23	25	25	2.00
1900632--1900873	80	3.0	78	89	4	376	20	16	26	36	1.94
1905659--1905897	80	3.0	80	91	3	392	20	16	26	36	1.93
1906300--1906530	80	2.9	80	92	1	392	19	16	26	37	1.93
1908405--1908446	22	1.9	22	85	9	59	23	4	28	42	1.74
1909983--1910107	39	3.2	39	64	20	105	20	16	25	38	1.92
1909896--1910141	80	3.1	80	93	0	420	19	18	26	34	1.95
1913588--1913631	21	2.1	21	100	0	88	34	27	20	18	1.96
1929441--1929506	16	4.1	16	92	0	96	22	22	9	45	1.80
1930191--1930228	19	2.0	20	94	5	69	26	31	0	42	1.56
1930196--1930258	27	2.3	27	83	5	74	26	30	0	42	1.56
1930340--1930412	2	36.5	2	94	5	130	50	0	1	47	1.09
1930631--1930681	20	2.5	20	96	0	93	39	11	25	23	1.89
1931588--1931661	39	2.0	38	86	7	107	43	0	31	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931588--1931661	19	3.9	19	89	5	107	43	0	31	25	1.55
1931951--1932034	18	4.6	19	79	10	77	48	8	3	39	1.51
1931960--1932034	35	2.1	35	85	5	96	49	5	4	41	1.44
1931978--1932025	2	23.0	2	87	8	69	50	2	2	45	1.25
1931978--1932059	35	2.3	36	81	12	98	48	3	3	43	1.38
1932180--1932273	18	5.2	18	72	19	63	39	3	4	53	1.37
1932142--1932259	54	2.2	54	87	3	166	44	5	2	47	1.38
1932317--1932499	18	9.8	18	72	16	115	45	2	3	48	1.32
1932311--1932471	47	3.4	47	76	13	186	45	3	4	46	1.38
1932281--1932467	94	2.0	95	93	1	322	43	4	5	45	1.47
1932417--1932507	2	47.5	2	70	20	61	45	0	3	51	1.17
1932451--1932507	13	4.4	13	80	8	62	45	0	1	52	1.11
1932311--1932489	47	3.8	46	74	14	159	45	2	3	47	1.35
1934995--1935050	21	2.7	21	97	0	103	37	19	12	30	1.89
1938004--1938067	29	2.2	30	88	8	96	39	1	15	43	1.56
1939655--1939724	20	3.5	20	80	2	68	34	25	15	24	1.95
1943499--1943539	14	2.9	14	85	3	55	21	24	29	24	1.99
1944929--1944981	21	2.5	21	81	6	72	20	26	18	33	1.96
1944971--1945022	21	2.5	21	87	3	70	38	17	23	21	1.93
1944956--1945147	41	4.7	41	68	9	113	31	20	19	28	1.97
1945032--1945104	21	3.5	21	79	3	76	23	21	17	36	1.94
1944909--1945125	103	2.1	103	82	6	262	29	21	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1945094--1945147	20	2.6	21	82	5	74	38	20	22	18	1.93
1944949--1945173	123	1.8	123	83	3	292	30	20	18	30	1.96
1945685--1945752	20	3.5	20	85	2	93	47	25	17	10	1.79
1945748--1945812	19	3.7	19	74	19	77	12	23	20	44	1.84
1945770--1945825	14	3.6	14	74	21	58	10	25	21	42	1.85
1945753--1945882	33	3.9	33	91	1	188	13	23	20	42	1.87
1945861--1945907	20	2.3	20	79	13	60	12	25	14	46	1.80
1947135--1947207	21	3.7	20	72	15	62	31	41	12	15	1.84
1947908--1947996	42	2.1	42	81	8	101	24	34	19	21	1.96
1949351--1949386	14	2.6	14	95	0	63	30	0	25	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11