genome.fa.s9074.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229460--231207	138	12.7	138	91	1	2699	32	24	20	22	1.97
229460--231207	688	2.5	689	91	1	2835	32	24	20	22	1.97
234281--234360	25	3.1	25	75	10	72	45	0	1	53	1.08
234344--234385	21	2.0	21	85	0	57	50	0	0	50	1.00
239357--239558	74	2.7	76	85	3	257	20	23	31	24	1.98
240151--240194	17	2.6	17	85	7	63	56	29	0	13	1.38
240146--240196	9	6.2	8	78	17	52	58	27	0	13	1.36
247897--248090	75	2.6	76	87	2	275	19	24	32	23	1.98
249257--249330	17	4.2	18	81	10	82	35	6	13	44	1.70
254133--254182	20	2.5	20	80	6	57	42	2	12	44	1.53
255680--255720	18	2.3	18	91	8	66	2	26	0	70	0.99
257716--257744	2	14.5	2	100	0	58	48	0	0	51	1.00
257812--257880	23	3.0	23	78	6	77	26	18	23	31	1.97
257773--257876	22	4.7	22	77	4	93	28	16	20	34	1.94
258964--259025	24	2.7	23	75	5	70	43	17	16	22	1.87
259016--259088	33	2.3	32	86	9	105	57	15	5	21	1.58
263660--263697	3	12.7	3	89	10	60	65	0	0	34	0.93
263657--263691	16	2.2	16	100	0	70	62	0	0	37	0.95
265179--265235	25	2.3	25	87	0	78	28	10	19	42	1.84
265539--265669	24	5.5	24	73	2	104	57	16	12	12	1.66
265937--266003	10	6.4	10	73	10	53	58	14	8	17	1.62
266182--266224	14	3.1	14	86	0	59	62	20	9	6	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266516--266544	3	9.7	3	100	0	58	65	0	0	34	0.93
266941--266968	2	14.0	2	100	0	56	50	0	0	50	1.00
272703--272774	28	2.5	28	90	6	108	38	1	0	59	1.06
275139--275327	44	4.4	42	79	6	148	30	15	23	31	1.95
275183--275327	44	3.3	44	80	5	168	30	16	24	28	1.96
275725--275777	21	2.5	21	87	0	79	1	33	20	43	1.63
275729--275785	21	2.6	21	75	5	60	1	35	17	45	1.59
285443--285500	23	2.6	22	89	5	82	22	34	15	27	1.94
287021--287053	10	3.3	10	84	16	50	9	0	27	63	1.24
294958--295209	41	6.1	42	68	15	132	31	20	16	31	1.95
294971--295207	82	2.9	83	70	6	196	30	20	17	31	1.96
301674--301785	3	38.3	3	94	5	203	34	0	0	65	0.93
304232--304261	13	2.3	13	94	0	51	46	10	6	36	1.64
309090--309147	29	2.0	29	96	0	107	36	31	10	22	1.88
309587--309819	82	2.8	82	79	3	252	32	17	18	32	1.94
309614--309815	83	2.5	82	80	2	217	33	17	17	31	1.93
310011--310089	41	1.9	41	87	10	117	25	17	17	39	1.92
310030--310142	42	2.7	41	83	8	122	29	11	17	41	1.85
310060--310158	42	2.3	42	80	1	117	32	11	18	38	1.86
310967--310997	12	2.6	12	94	0	53	54	9	9	25	1.63
320230--320277	21	2.3	21	88	0	78	27	0	27	45	1.54
333401--333530	22	5.9	22	73	0	116	32	17	20	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333419--333535	44	2.7	44	94	0	198	35	16	18	29	1.93
339609--339670	26	2.5	24	78	12	72	40	4	1	53	1.32
339794--339875	31	2.7	29	75	9	83	53	1	6	39	1.34
339786--339884	29	3.3	31	76	11	98	54	2	5	38	1.34
339905--339980	25	3.1	25	80	3	91	52	0	2	44	1.14
340411--340493	30	2.7	31	84	3	105	54	8	8	28	1.60
340413--340507	31	3.1	30	77	8	93	53	8	7	30	1.58
342117--342358	99	2.4	100	92	0	396	30	13	21	35	1.91
342117--342384	100	2.7	98	87	4	367	29	13	20	35	1.91
342299--342452	68	2.3	68	94	0	263	31	14	18	35	1.92
362947--362984	20	1.9	20	88	0	58	13	21	23	42	1.88
363014--363121	20	5.3	20	63	4	63	22	22	20	35	1.96
363042--363109	21	3.3	21	64	4	57	27	19	23	29	1.98
363016--363132	41	2.9	41	98	0	225	22	21	22	34	1.97
363887--363939	22	2.4	22	87	0	79	39	26	15	18	1.90
363931--364104	20	8.6	20	82	2	204	40	22	21	16	1.91
363931--364126	41	4.8	41	91	1	218	39	22	19	17	1.92
364011--364125	21	5.6	21	71	4	108	35	25	17	21	1.95
363951--364126	41	4.3	41	91	0	264	39	23	19	18	1.92
363931--364104	61	2.9	60	81	2	195	40	22	21	16	1.91
364781--365043	131	2.0	131	100	0	526	40	9	9	40	1.70
366438--366464	3	9.0	3	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368106--368189	30	2.8	30	77	0	87	16	22	17	42	1.88
374670--374815	79	1.8	79	100	0	292	46	4	12	36	1.61
374791--374821	2	15.5	2	93	0	53	54	0	0	45	0.99
376536--376589	14	4.0	14	81	15	53	70	0	7	22	1.12
376560--376584	12	2.1	12	100	0	50	76	0	0	24	0.80
378624--378712	22	4.0	22	88	5	117	23	16	28	31	1.96
378623--378718	44	2.2	45	84	7	133	21	15	30	32	1.95
379489--379553	28	2.4	27	82	5	85	29	15	9	46	1.77
387090--387120	8	4.0	8	91	8	55	74	0	0	25	0.82
387090--387120	15	2.0	16	93	6	55	74	0	0	25	0.82
387922--388111	94	2.0	94	100	0	380	25	24	26	23	2.00
399271--399520	124	2.0	125	99	0	493	24	25	16	32	1.96
404160--404212	22	2.2	23	77	16	54	58	1	0	39	1.09
404172--404223	27	1.9	27	88	0	77	61	0	0	38	0.96
405644--406122	132	3.6	132	86	2	649	40	18	25	15	1.90
405648--406118	66	7.1	66	67	12	252	40	19	24	15	1.90
407914--407962	22	2.2	23	85	3	64	67	4	10	18	1.36
408053--408093	18	2.3	19	79	12	50	63	0	14	21	1.30
409351--409389	18	2.2	18	86	9	53	74	0	0	25	0.82
409426--409479	21	2.5	22	90	3	83	51	7	1	38	1.41
409426--409487	21	2.8	22	85	9	74	50	6	1	41	1.38
409538--409599	24	2.6	24	100	0	124	41	8	4	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409573--409713	37	3.7	38	77	10	146	44	9	4	41	1.58
409567--409714	38	3.9	37	76	11	140	43	9	4	41	1.58
409700--409728	14	2.1	14	100	0	58	44	6	6	41	1.58
409562--409739	77	2.3	75	85	3	259	43	9	5	42	1.59
412162--412225	24	2.8	24	71	21	66	29	18	29	21	1.97
418707--418740	13	2.5	13	90	4	50	73	0	14	11	1.10
420272--420319	23	2.2	21	79	13	60	31	22	25	20	1.98
422441--422479	14	2.7	15	92	4	62	38	25	7	28	1.83
425265--425307	23	1.9	22	81	13	52	62	0	11	25	1.29
426618--426666	22	2.3	21	82	3	62	51	6	2	40	1.38
426677--426895	76	2.9	76	81	8	252	39	10	5	45	1.61
426785--426820	14	2.5	14	90	4	54	44	8	2	44	1.48
426663--426897	38	6.2	38	73	13	182	39	10	4	45	1.59
426864--426888	13	1.9	13	100	0	50	40	12	8	40	1.72
426650--426909	39	6.8	39	70	20	181	39	9	4	46	1.57
427564--427683	42	2.8	42	83	7	134	28	15	28	27	1.96
427580--427787	42	4.9	43	82	1	213	24	18	26	30	1.98
427623--427788	43	3.9	42	82	3	208	22	18	25	33	1.97
427647--427804	85	1.8	85	86	6	230	21	21	25	31	1.98
427646--427831	85	2.2	85	82	7	225	22	19	25	32	1.98
429602--429648	22	2.1	22	100	0	94	51	12	19	17	1.77
433683--434025	41	8.4	41	81	3	289	32	19	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433669--434066	41	9.7	41	79	3	244	32	20	20	27	1.97
434789--434860	29	2.4	30	93	2	119	20	38	27	12	1.89
434946--435025	33	2.4	33	89	0	115	26	25	36	12	1.91
434970--435037	33	2.1	32	89	5	102	26	25	38	10	1.88
435059--435127	29	2.3	30	85	5	104	15	33	30	20	1.94
435133--435202	33	2.2	32	86	2	95	8	35	30	25	1.86
435184--435230	14	3.4	14	90	0	67	6	25	40	27	1.80
437238--437343	31	3.5	30	74	7	81	43	6	18	31	1.76
440083--440111	15	1.9	15	100	0	58	20	0	17	62	1.33
444487--444533	24	2.0	23	83	4	58	63	4	23	8	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11