genome.fa.s9074.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615695--615810	57	2.0	57	86	3	160	35	6	17	40	1.76
615895--615921	10	2.7	10	100	0	54	11	29	25	33	1.91
622886--623065	29	6.2	29	87	5	213	32	4	22	41	1.74
622886--623044	59	2.7	59	88	4	232	32	5	22	39	1.76
624980--625026	25	2.0	23	87	8	67	48	0	4	46	1.21
626444--626586	36	4.1	36	76	10	120	44	6	10	39	1.64
627929--627988	22	2.6	23	82	10	77	41	5	0	53	1.23
627990--628035	23	1.9	25	86	8	69	39	4	4	52	1.41
629027--629067	2	20.5	2	100	0	82	48	0	0	51	1.00
630785--630810	2	13.0	2	100	0	52	50	0	0	50	1.00
631085--631616	157	3.4	155	85	3	672	46	7	18	27	1.75
632055--632155	21	4.9	20	81	11	107	20	20	26	31	1.98
632055--632171	42	2.8	40	83	10	121	21	20	23	34	1.97
632105--632171	21	3.2	20	76	16	73	22	20	19	37	1.95
632296--632325	6	5.2	6	96	4	53	0	16	53	30	1.44
632417--632558	42	3.4	42	77	3	151	39	17	16	26	1.91
632533--632602	21	3.4	21	80	2	70	35	21	22	20	1.96
632555--632747	97	2.0	98	96	1	361	31	18	25	24	1.98
633369--633434	3	21.3	3	82	11	80	31	3	1	63	1.19
633370--633434	25	2.4	27	82	14	82	30	3	1	64	1.18
633454--633496	11	3.7	12	85	11	54	48	41	9	0	1.35
638635--638683	17	2.7	19	84	6	66	32	18	18	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639456--639507	24	2.2	24	82	0	59	67	1	23	7	1.27
639895--639937	16	2.6	17	92	3	70	23	13	11	51	1.74
641535--641583	23	2.2	22	82	7	55	30	22	22	24	1.99
641625--641952	165	2.0	163	95	4	590	31	22	4	41	1.75
643518--643571	20	2.8	19	91	5	83	74	0	11	14	1.08
643583--643623	19	2.2	19	87	12	59	75	0	17	7	1.02
643620--643703	45	1.9	43	80	9	98	35	16	28	19	1.93
644809--645390	134	4.3	134	82	2	652	32	21	15	30	1.94
644808--645390	268	2.2	268	83	3	753	33	21	15	30	1.94
645563--645616	3	17.3	3	81	14	65	33	1	1	62	1.16
646580--646611	7	4.4	7	96	4	55	68	0	18	12	1.20
647805--647831	14	1.9	14	100	0	54	37	3	0	59	1.15
658477--658512	16	2.2	17	90	5	56	50	2	0	47	1.15
660536--660571	18	2.1	18	89	5	56	22	11	0	66	1.22
660833--660906	17	4.5	17	71	21	59	74	5	14	5	1.18
660835--660910	25	3.1	24	72	20	68	75	3	15	5	1.14
664147--664216	19	3.6	19	90	1	95	35	14	5	44	1.69
664627--664659	17	1.9	17	88	11	50	18	12	0	69	1.18
671248--671274	14	1.9	14	100	0	54	66	18	7	7	1.40
673675--673736	8	8.4	7	77	19	56	29	0	0	70	0.87
673672--673735	3	21.3	3	79	17	55	29	0	0	70	0.88
673672--673735	24	2.5	26	82	17	80	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674127--674279	10	13.5	11	66	20	50	21	6	0	71	1.08
674182--674244	10	6.1	10	75	17	58	15	6	0	77	0.96
674182--674244	22	3.0	20	76	13	65	15	6	0	77	0.96
674187--674293	22	5.0	20	70	21	58	21	4	0	72	1.08
674194--674261	30	2.2	32	85	15	90	23	4	0	72	1.03
674197--674280	34	2.6	30	82	16	89	23	3	0	72	1.00
677981--678620	110	5.9	110	88	1	894	34	20	18	26	1.96
678745--679507	84	9.2	83	78	6	704	30	25	19	24	1.98
678741--679494	249	3.0	249	89	1	1100	31	25	19	24	1.98
678742--679512	165	4.6	164	79	8	761	30	25	19	24	1.98
679858--679918	11	5.1	12	74	21	56	32	0	0	67	0.91
679854--679919	3	22.7	3	79	17	77	31	0	0	68	0.90
681474--681507	16	2.1	17	88	5	52	55	11	0	32	1.36
682954--683513	138	4.1	137	76	7	485	44	13	11	29	1.79
693226--693266	22	1.9	21	85	5	55	43	0	0	56	0.99
693406--693445	16	2.5	16	87	0	53	2	12	30	55	1.50
693465--693504	16	2.5	16	83	0	53	12	10	25	52	1.70
694692--694928	118	2.0	117	83	4	298	24	17	14	42	1.87
696014--696066	19	2.8	19	97	0	97	50	18	16	13	1.77
696094--696226	20	6.5	20	70	14	74	36	22	18	22	1.95
696157--696391	20	11.6	20	73	7	125	38	24	17	18	1.92
696157--696388	81	2.9	80	79	5	236	38	24	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696222--696388	40	4.1	41	88	1	239	38	24	17	19	1.92
696218--696388	60	2.8	61	79	1	182	38	24	17	19	1.93
696950--697040	20	4.6	20	82	9	114	50	19	17	12	1.77
696950--697044	40	2.4	40	84	7	131	50	18	18	11	1.77
697067--697146	20	4.1	19	84	6	106	12	23	18	45	1.84
699169--699235	21	3.2	21	66	6	55	23	35	20	19	1.95
699117--699235	42	2.8	42	81	5	107	22	36	18	22	1.95
700589--700624	14	2.6	14	95	0	63	33	0	22	44	1.53
700731--700789	19	3.4	19	71	22	65	45	18	20	15	1.85
700731--700810	33	2.4	33	91	0	124	46	21	20	12	1.83
700820--700913	33	2.8	33	90	0	143	15	22	17	44	1.86
700816--700967	19	8.7	19	64	21	82	15	22	17	44	1.87
700907--701000	33	2.8	34	78	3	118	15	22	21	40	1.91
700973--701046	20	3.7	20	69	16	62	24	17	25	32	1.97
703529--703575	24	2.0	24	95	0	85	34	17	21	27	1.95
703533--703584	24	2.2	24	85	0	68	36	19	19	25	1.95
704441--704641	20	9.9	20	78	5	181	22	18	20	37	1.94
704441--704641	40	5.0	40	88	1	249	22	18	20	37	1.94
704659--704717	20	3.0	20	82	7	75	18	18	20	42	1.90
713458--713489	9	3.7	9	95	4	57	21	0	0	78	0.76
721343--721402	20	2.9	21	69	14	61	13	23	35	28	1.92
725206--725245	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729030--729061	16	1.9	17	93	6	57	40	18	3	37	1.67
730615--730654	2	20.0	2	100	0	80	50	0	0	50	1.00
734239--734312	37	2.0	37	91	0	121	29	9	16	44	1.79
734365--734449	38	2.3	36	80	13	93	41	0	2	56	1.12
737693--737764	18	4.0	18	98	0	135	27	34	20	16	1.95
738186--738240	11	5.5	10	76	20	53	50	18	1	29	1.57
740129--740301	20	8.6	20	79	4	195	37	25	18	18	1.93
740088--740299	81	2.6	80	86	4	266	37	25	17	18	1.93
740129--740299	40	4.2	41	90	1	265	38	25	18	18	1.93
740863--740934	20	3.6	19	79	7	81	51	18	16	13	1.77
740961--741067	19	6.1	19	66	22	72	13	23	19	43	1.86
740966--741059	33	2.8	33	90	1	143	12	22	21	43	1.86
743090--743149	21	2.9	21	71	0	66	23	35	20	21	1.96
744501--744550	14	3.6	14	97	0	91	36	0	22	42	1.54
744657--744715	19	3.4	19	71	22	65	45	18	20	15	1.85
744657--744736	33	2.4	33	91	0	124	46	21	20	12	1.83
744742--744893	19	8.7	19	67	21	109	13	23	19	44	1.86
744746--744839	33	2.8	33	98	0	179	12	24	19	43	1.85
744851--744878	14	2.0	14	100	0	56	14	21	21	42	1.88
744781--744892	53	2.1	52	90	1	170	14	21	19	44	1.86
744833--744915	33	2.5	34	82	2	105	15	20	20	43	1.88
744742--744933	86	2.2	85	85	1	258	14	22	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744812--744922	53	2.1	52	80	9	118	14	21	21	42	1.88
747450--747496	24	2.0	24	95	0	85	36	21	21	21	1.96
747450--747510	24	2.5	24	83	0	59	34	21	19	24	1.96
748354--748645	20	14.5	19	78	12	221	19	18	23	38	1.93
748354--748645	40	7.2	40	83	6	295	19	18	23	38	1.93
748354--748565	60	3.5	60	82	4	257	19	18	23	38	1.93
750358--750400	14	2.9	14	80	19	52	48	0	0	51	1.00
750397--750433	14	2.7	14	87	4	58	35	10	0	54	1.36
753573--754050	145	3.3	146	77	6	359	34	19	23	21	1.96
754210--754327	30	4.0	29	70	6	85	22	11	11	55	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11