genome.fa.s9074.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452864--452911	20	2.4	20	89	0	78	41	20	0	37	1.53
454570--454651	28	2.8	31	82	14	95	39	14	2	43	1.59
459722--459790	32	2.2	32	83	0	84	24	17	17	40	1.90
461055--461126	30	2.3	30	90	4	108	48	16	9	25	1.76
464074--464099	13	2.0	13	100	0	52	46	7	15	30	1.74
464944--465011	36	1.9	35	82	8	84	41	2	5	50	1.42
469222--469335	60	1.9	60	83	7	151	31	16	16	35	1.92
469235--469348	60	1.9	60	82	7	142	31	20	14	34	1.92
470196--470234	15	2.6	15	95	0	69	35	0	7	56	1.28
475830--475932	29	3.4	29	70	16	75	42	6	10	39	1.66
475835--475936	30	3.4	30	74	14	102	41	7	10	40	1.69
480807--481037	111	2.1	111	94	2	401	39	12	11	35	1.80
485405--485449	18	2.5	18	100	0	90	40	24	15	20	1.91
487026--487093	31	2.2	31	91	0	109	33	10	20	35	1.87
487082--487157	31	2.5	31	93	0	125	34	27	5	32	1.79
490683--490727	2	22.5	2	100	0	90	51	0	0	48	1.00
490708--490834	63	2.0	63	92	0	209	40	11	9	39	1.73
493637--493709	37	2.0	37	83	5	94	49	1	4	45	1.29
500956--501000	2	22.5	2	100	0	90	48	0	0	51	1.00
501006--501079	34	2.1	37	87	7	109	40	4	10	44	1.58
501041--501096	27	2.1	27	87	12	82	37	1	8	51	1.44
501040--501103	27	2.4	27	80	17	80	40	1	7	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501079--501170	37	2.4	38	83	1	114	43	2	1	53	1.20
501226--501304	3	25.3	3	77	10	70	34	2	1	62	1.17
501226--501319	31	3.1	30	80	13	106	32	3	1	62	1.18
501216--501320	35	3.2	33	78	15	101	33	2	0	62	1.16
507925--508868	165	5.7	164	88	1	1325	31	23	20	24	1.98
507925--508868	329	2.9	326	88	2	1336	31	23	20	24	1.98
509510--509682	37	4.8	37	78	14	132	43	4	8	43	1.52
509606--509682	38	2.1	37	90	2	118	41	3	10	44	1.57
509643--509706	27	2.4	27	80	17	80	40	1	7	50	1.41
509682--509774	38	2.4	38	83	3	116	44	2	1	52	1.20
509834--509912	3	26.3	3	75	14	74	31	2	1	64	1.15
509822--509927	37	2.9	35	77	19	101	32	2	0	64	1.15
509834--509929	8	11.8	8	69	16	54	30	3	1	65	1.15
509839--509919	13	6.3	13	80	7	94	29	3	1	65	1.17
509822--509928	6	15.7	7	74	16	75	31	2	0	64	1.14
510571--510605	18	1.9	18	88	0	52	71	22	5	0	1.07
512592--512692	31	3.4	29	81	6	105	43	13	6	35	1.71
512789--512840	27	1.9	27	96	0	95	48	7	3	40	1.50
512799--512858	27	2.3	26	85	8	77	56	5	3	35	1.37
514225--514269	23	2.0	23	82	8	56	48	15	22	13	1.79
515087--515460	43	8.7	43	83	1	412	34	18	21	25	1.96
515073--515460	86	4.5	86	84	1	467	34	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515075--515457	128	3.0	128	81	2	437	34	18	21	25	1.96
516449--516528	3	27.0	3	81	7	92	30	2	0	67	1.04
516898--516935	20	1.9	20	88	0	58	28	28	23	18	1.98
518144--518186	15	2.9	16	83	13	56	44	0	0	55	0.99
518598--518953	21	16.6	21	66	15	122	23	22	22	32	1.98
518598--518962	42	8.5	42	71	16	191	23	22	21	32	1.98
518641--518794	49	3.3	49	66	18	137	24	24	20	31	1.98
518599--518825	91	2.5	91	92	3	370	24	23	21	30	1.99
518843--518977	42	3.3	42	93	2	229	21	18	23	36	1.95
519707--519778	21	3.4	21	70	14	76	37	22	19	20	1.94
519709--519791	42	2.0	42	97	0	157	36	24	19	20	1.95
519728--519794	21	3.2	21	66	16	57	32	26	19	20	1.97
519709--519814	42	2.5	42	89	0	122	38	22	16	21	1.93
520879--520989	21	5.3	21	85	8	154	40	19	18	21	1.91
520856--521013	63	2.5	63	93	0	271	37	22	18	20	1.94
520921--521059	21	6.6	21	85	6	133	33	26	19	20	1.96
520866--521053	42	4.5	40	76	12	123	35	23	19	21	1.96
523327--524101	183	4.3	182	86	4	1082	43	12	15	28	1.83
524534--524608	19	3.9	19	82	0	87	46	4	17	32	1.66
525305--525366	29	2.1	29	100	0	124	40	9	17	32	1.82
527956--528001	19	2.4	19	96	0	83	30	2	10	56	1.46
528374--529671	199	6.5	200	93	0	1971	41	15	14	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528374--529671	400	3.3	396	90	0	1988	41	15	14	28	1.86
531059--531101	21	2.0	21	90	0	68	23	16	25	34	1.95
531220--531269	3	16.7	3	82	0	55	42	2	32	24	1.66
532546--532598	24	2.2	24	89	0	79	39	1	11	47	1.50
532772--533471	200	3.5	198	86	3	960	41	17	13	27	1.87
533323--533637	166	1.9	166	94	0	558	41	18	13	26	1.87
533105--533837	366	2.0	365	90	1	1139	41	18	13	27	1.87
533476--534069	200	3.0	199	85	3	712	40	16	13	29	1.86
533536--534286	200	3.7	201	85	3	659	37	16	14	31	1.89
533841--534330	200	2.5	199	86	2	662	35	15	15	34	1.89
538058--538220	87	1.9	87	94	0	290	31	14	13	40	1.85
538142--538186	23	2.0	23	95	0	81	37	20	8	33	1.83
539471--539515	21	2.1	21	95	0	81	20	22	26	31	1.98
542376--542414	19	2.1	18	85	4	51	35	0	5	58	1.20
543122--543150	14	2.0	15	93	6	51	27	34	17	20	1.95
546922--547062	61	2.3	61	90	0	219	26	13	24	36	1.92
547520--547685	67	2.5	65	76	12	165	44	10	13	30	1.79
547539--547685	67	2.2	66	80	3	170	44	10	14	30	1.79
552293--552348	21	2.7	21	97	0	103	42	7	16	33	1.75
553234--553263	2	15.0	2	100	0	60	50	0	0	50	1.00
557017--557149	44	3.0	44	87	0	194	30	22	13	33	1.93
559999--560058	30	2.0	30	81	12	70	56	8	6	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560884--560918	17	2.1	17	100	0	70	28	31	17	22	1.96
575676--575726	15	3.4	15	100	0	102	33	0	13	52	1.41
577825--577932	24	4.5	24	75	10	87	18	16	16	48	1.82
577862--577931	12	5.8	12	78	6	70	14	14	18	52	1.74
578090--578130	2	20.5	2	100	0	82	48	0	0	51	1.00
580019--580048	13	2.3	13	100	0	60	16	46	23	13	1.82
579997--580042	18	2.6	18	96	0	83	19	52	19	8	1.72
582498--582605	24	4.5	24	75	10	87	18	16	16	48	1.82
582540--582604	12	5.4	12	70	7	51	13	13	16	55	1.70
582515--582606	48	1.9	48	88	4	141	18	15	16	50	1.79
582775--582810	2	18.0	2	100	0	72	0	0	50	50	1.00
585281--585306	7	3.7	7	100	0	52	26	0	0	73	0.84
590610--590680	29	2.4	29	97	0	133	49	9	4	36	1.56
592786--592810	5	5.0	5	100	0	50	60	0	0	40	0.97
592799--592861	28	2.2	30	91	5	103	57	11	0	31	1.34
592838--592881	21	2.1	21	95	0	79	54	13	0	31	1.39
592803--592868	28	2.4	28	85	10	98	56	10	0	33	1.34
594883--594987	30	3.5	30	76	2	104	38	18	18	25	1.93
597485--597598	30	3.8	30	92	1	174	36	17	13	32	1.88
600166--600193	2	14.0	2	100	0	56	50	0	0	50	1.00
600753--600777	8	3.1	8	100	0	50	52	12	0	36	1.39
602498--602523	13	2.0	13	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603535--603573	17	2.3	17	100	0	78	20	53	10	15	1.70
604496--605965	106	13.9	106	93	0	2374	23	18	24	33	1.97
605660--606325	361	1.8	359	91	0	1089	24	18	24	32	1.97
606020--606578	105	5.3	105	93	0	938	23	17	25	33	1.96
606020--606578	211	2.6	211	94	0	949	23	17	25	33	1.96
608339--608390	26	2.0	25	82	10	61	59	3	17	19	1.52
610127--610152	13	2.0	13	100	0	52	69	0	0	30	0.89
611163--611202	17	2.4	17	100	0	80	20	52	12	15	1.74
611541--611575	7	5.0	7	92	0	61	14	40	2	42	1.60
615671--615852	30	6.1	29	75	15	142	34	5	18	41	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11