genome.fa.s9074.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949493--1949559	19	3.8	19	71	18	63	46	19	20	13	1.83
1949564--1949714	19	8.7	19	64	21	80	14	22	20	42	1.88
1949568--1949694	33	3.9	32	87	8	193	14	22	19	43	1.87
1949561--1949693	66	2.0	66	97	0	248	15	22	19	42	1.89
1950809--1950845	12	3.1	12	96	0	65	2	27	0	70	1.01
1951020--1951073	24	2.2	24	90	0	81	40	20	16	22	1.91
1951856--1951905	21	2.5	20	86	3	64	38	18	22	22	1.94
1951934--1951983	20	2.5	20	80	0	73	38	22	18	22	1.94
1952227--1952300	19	4.5	16	83	16	66	13	20	18	47	1.82
1952223--1952290	19	3.8	19	87	12	101	13	22	17	47	1.82
1952427--1952479	14	3.8	14	89	0	70	43	16	0	39	1.49
1954348--1954398	20	2.5	20	83	0	66	39	21	25	13	1.90
1954385--1954475	14	5.4	17	70	27	61	49	21	15	13	1.78
1954385--1954489	33	3.2	33	91	1	176	49	22	15	12	1.78
1954402--1954491	14	5.8	14	71	21	72	51	23	14	11	1.74
1954385--1954507	65	1.9	66	86	5	178	48	23	15	12	1.78
1954515--1954599	33	2.6	33	92	0	143	15	17	18	48	1.82
1954503--1954569	19	3.8	19	75	18	63	16	20	16	46	1.84
1954584--1954627	20	2.2	20	88	4	63	18	25	20	36	1.95
1954593--1954638	20	2.3	20	84	0	56	17	21	23	36	1.94
1955114--1955158	18	2.5	18	85	0	63	15	15	42	26	1.87
1956478--1956520	20	2.2	20	91	0	68	51	20	18	9	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1956800--1956843	22	2.0	22	95	0	79	18	15	45	20	1.85
1957017--1957085	21	3.3	21	72	11	70	20	15	23	40	1.91
1957015--1957124	41	2.7	41	84	4	143	23	17	22	36	1.95
1957072--1957125	20	2.7	20	91	0	90	25	18	22	33	1.97
1957196--1957236	21	2.0	21	85	0	55	34	29	17	19	1.94
1958520--1958573	15	3.6	15	82	9	65	25	7	24	42	1.80
1959869--1959948	40	2.0	40	97	0	151	31	17	16	35	1.92
1960060--1960093	15	2.3	15	94	0	59	23	8	14	52	1.69
1962772--1962822	21	2.4	22	83	6	70	21	0	9	68	1.18
1976131--1976226	43	2.3	43	83	8	117	35	17	12	34	1.88
1976151--1976248	43	2.2	44	84	7	128	36	19	12	31	1.89
1976280--1976321	20	2.1	20	86	0	57	14	14	2	69	1.30
1978085--1978405	175	1.8	175	93	0	561	40	16	22	19	1.91
1980077--1980267	82	2.3	83	82	6	221	33	16	16	33	1.91
1982611--1982649	2	19.5	2	100	0	78	48	0	0	51	1.00
1989493--1989631	72	1.9	72	92	0	233	33	17	17	30	1.94
1991032--1991107	23	3.4	23	74	13	61	31	19	25	23	1.98
1991106--1991154	21	2.2	22	82	7	55	38	24	10	26	1.87
1995601--1995672	29	2.5	29	76	0	81	25	20	15	38	1.92
1999374--1999453	2	40.0	2	100	0	160	50	0	0	50	1.00
1999979--2000017	14	2.8	14	88	0	51	38	0	2	58	1.12
2005171--2005221	22	2.3	22	93	0	84	19	15	25	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2005317--2005355	6	7.0	6	97	2	57	28	53	17	0	1.44
2005318--2005358	5	7.6	5	97	2	55	26	53	19	0	1.45
2007687--2007762	36	2.1	36	97	0	143	31	10	14	43	1.79
2009152--2009189	19	2.1	18	90	9	60	71	0	7	21	1.11
2022705--2022732	2	14.0	2	100	0	56	50	0	0	50	1.00
2023280--2023479	78	2.5	79	87	3	269	29	25	12	33	1.92
2027482--2027705	64	3.5	64	81	4	213	31	20	20	27	1.97
2029347--2029486	34	3.8	34	76	20	138	30	24	11	33	1.91
2029337--2029536	78	2.5	79	86	3	260	29	25	12	33	1.92
2061692--2061901	105	2.0	105	98	0	402	31	22	16	29	1.96
2066990--2067064	33	2.1	37	80	9	86	21	13	4	61	1.48
2072877--2072914	3	12.7	3	100	0	76	31	0	0	68	0.90
2072972--2073018	3	16.0	3	88	4	69	36	2	0	61	1.08
2073174--2073218	23	1.9	23	86	4	63	20	22	0	57	1.40
2075790--2075817	13	2.2	13	100	0	56	39	28	17	14	1.89
2077328--2077371	23	1.9	23	81	9	54	40	4	2	52	1.34
2078682--2078741	22	2.8	22	97	2	113	50	6	28	15	1.69
2079258--2079308	23	2.3	23	93	3	86	52	9	9	27	1.65
2079600--2079631	16	2.0	16	100	0	64	18	50	12	18	1.78
2089723--2089813	42	2.2	42	85	0	119	25	20	15	38	1.92
2092598--2092630	11	3.0	11	100	0	66	9	18	18	54	1.69
2095162--2095223	2	32.0	2	93	6	110	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2098057--2098098	3	14.7	3	85	9	61	69	0	0	30	0.89
2098057--2098097	11	3.6	11	90	6	64	68	0	0	31	0.90
2100941--2101021	27	3.2	26	75	20	91	38	2	25	33	1.70
2100941--2101012	13	5.8	13	69	18	64	40	2	25	31	1.70
2101367--2101489	46	2.7	46	87	3	160	30	21	18	30	1.97
2108704--2108747	21	2.1	21	82	0	52	13	40	13	31	1.84
2109417--2109491	25	3.0	25	100	0	150	36	0	40	24	1.55
2109860--2110019	65	2.5	65	82	5	173	29	22	20	28	1.98
2112311--2112341	11	2.8	11	95	0	53	16	22	35	25	1.94
2114558--2114713	42	3.7	42	93	1	260	29	21	24	24	1.99
2114580--2114696	23	5.4	23	65	29	87	31	21	23	23	1.98
2114576--2114713	23	6.5	22	65	20	71	29	21	25	23	1.99
2117059--2117277	119	1.8	119	89	1	341	43	7	9	39	1.65
2117255--2117287	14	2.3	15	89	5	50	51	3	15	30	1.58
2121805--2121877	31	2.4	31	95	0	128	34	19	13	32	1.91
2127506--2127562	23	2.4	23	79	5	60	40	7	0	52	1.28
2127537--2127703	30	5.9	28	78	12	182	43	8	0	47	1.34
2127514--2127700	59	3.3	59	80	12	205	42	9	0	48	1.35
2127933--2128375	82	5.4	81	82	2	510	20	18	21	38	1.94
2129284--2129398	51	2.3	51	86	3	160	37	18	15	28	1.91
2129603--2129655	24	2.2	24	93	0	88	15	20	16	47	1.83
2129611--2129657	24	2.0	24	100	0	94	17	17	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2136217--2136259	20	2.2	20	86	0	59	32	18	13	34	1.90
2141839--2141881	20	2.2	20	86	0	59	34	18	13	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!