genome.fa.s9074.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009074.1 Hibiscus syriacus cultivar Beakdansim tig00112507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2143704

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940988--941155	58	2.9	58	83	4	178	32	13	13	41	1.83
942418--942459	19	2.2	19	86	0	57	30	33	14	21	1.93
942498--942585	20	4.4	19	77	16	81	27	21	14	36	1.93
942477--942585	40	2.7	40	81	4	139	29	22	13	34	1.92
947611--947728	21	5.6	21	84	0	146	21	16	36	25	1.94
947611--947731	42	2.9	42	87	0	170	22	17	35	24	1.95
947871--947912	12	3.5	12	83	6	50	69	7	0	23	1.13
948039--948139	42	2.4	42	96	0	193	35	32	9	21	1.87
948051--948117	21	3.2	21	66	8	64	37	28	10	23	1.88
948336--948434	42	2.4	42	86	3	137	18	18	35	28	1.94
949815--949853	20	2.0	20	100	0	78	15	10	20	53	1.70
950192--950248	21	2.6	22	80	2	71	19	17	42	21	1.90
950353--950390	20	2.0	20	84	5	51	44	13	15	26	1.83
950416--950462	20	2.3	20	85	7	60	21	19	27	31	1.97
950552--950592	2	20.5	2	100	0	82	48	0	0	51	1.00
956894--956934	21	2.0	21	85	0	55	26	0	26	46	1.53
958328--958513	62	3.0	62	92	3	331	27	17	14	40	1.89
958328--958504	60	2.9	60	94	1	309	27	18	14	40	1.89
961417--961450	2	17.0	2	100	0	68	0	50	0	50	1.00
963380--963446	32	2.1	32	100	0	134	28	8	8	53	1.62
963491--963613	53	2.3	53	98	0	237	51	13	8	26	1.69
972439--972477	19	2.1	19	100	0	78	46	10	5	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976009--976081	38	1.9	38	100	0	146	21	17	30	30	1.97
979350--979520	85	2.0	82	87	5	245	29	2	13	54	1.51
979374--979533	85	1.9	85	89	2	250	27	1	15	55	1.50
979826--979860	18	1.9	18	88	0	52	48	17	0	34	1.47
980130--980181	27	2.0	26	84	3	68	17	15	0	67	1.24
981723--981774	21	2.5	21	80	0	68	40	19	21	19	1.92
985898--985948	11	4.8	11	78	7	61	17	7	3	70	1.27
985974--986002	15	1.9	15	100	0	58	31	0	0	68	0.89
989725--989878	79	1.9	80	86	3	222	28	1	14	54	1.51
989722--989909	79	2.4	78	82	8	193	28	3	14	53	1.57
996072--996110	6	6.8	6	88	11	64	87	0	0	12	0.55
996071--996109	16	2.4	16	95	4	69	87	0	0	12	0.55
996072--996119	22	2.2	22	88	0	69	83	2	4	10	0.87
1001495--1001527	9	3.8	9	84	8	50	54	0	0	45	0.99
1002033--1002093	27	2.2	29	77	14	74	36	4	1	57	1.30
1003420--1003483	3	21.3	3	92	6	103	64	0	1	34	1.03
1003420--1003483	19	3.3	20	91	8	91	64	0	1	34	1.03
1003488--1003518	2	16.0	2	93	6	55	51	0	0	48	1.00
1003775--1003828	20	2.7	20	82	0	63	27	18	24	29	1.98
1003646--1003927	119	2.4	119	91	0	449	32	18	17	31	1.94
1003795--1004244	99	4.3	99	81	11	542	30	18	16	34	1.93
1003993--1004046	20	2.7	20	85	0	63	25	20	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003698--1004250	218	2.5	218	94	0	980	30	18	16	34	1.93
1003894--1004133	119	2.0	119	92	0	399	29	19	17	34	1.94
1006967--1006994	14	2.0	14	100	0	56	0	14	0	85	0.59
1013278--1013310	9	3.8	9	84	8	50	54	0	0	45	0.99
1013809--1013869	27	2.2	29	77	14	74	36	4	1	57	1.30
1015210--1015272	3	21.7	3	85	6	85	60	0	3	36	1.13
1023911--1023935	2	12.5	2	100	0	50	48	0	0	52	1.00
1029123--1029258	33	4.1	33	84	3	107	32	31	14	21	1.93
1029141--1029273	33	4.0	33	82	7	137	34	30	12	22	1.92
1029141--1029273	66	2.0	66	82	5	162	34	30	12	22	1.92
1031003--1031062	29	2.0	31	90	6	97	35	6	16	41	1.75
1031140--1031192	19	2.8	19	88	0	70	39	13	13	33	1.83
1031368--1031407	20	1.9	21	85	10	55	37	37	10	15	1.80
1034607--1034677	19	3.7	19	84	5	81	36	8	12	42	1.73
1034783--1034824	21	2.0	21	95	0	75	23	21	28	26	1.99
1034852--1034891	20	1.9	21	85	10	55	37	37	10	15	1.80
1038414--1038465	22	2.4	22	100	0	104	15	19	15	50	1.79
1040266--1040395	60	2.2	60	90	1	199	32	26	10	30	1.90
1048523--1048600	12	6.5	12	78	0	75	8	10	47	33	1.69
1048523--1048600	36	2.2	36	92	0	129	8	10	47	33	1.69
1048573--1048702	63	2.0	65	89	4	201	16	10	36	36	1.83
1051271--1051328	20	2.7	20	81	10	62	27	20	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051320--1051356	19	1.9	19	100	0	74	27	32	16	24	1.96
1055136--1055201	19	3.5	19	97	0	123	25	33	16	24	1.96
1059923--1059959	13	2.8	13	100	0	74	40	13	5	40	1.67
1060380--1060456	23	3.4	23	75	7	86	28	23	23	24	1.99
1062900--1062938	20	1.9	21	84	5	53	30	15	5	48	1.66
1066263--1066351	23	3.9	23	85	4	108	23	24	20	31	1.98
1066273--1066353	23	3.5	23	91	0	126	20	25	23	29	1.99
1066959--1067009	20	2.6	20	87	3	68	37	17	7	37	1.79
1068567--1068599	2	16.0	2	93	6	57	48	0	3	48	1.17
1068183--1068584	198	2.0	201	92	3	677	48	6	12	33	1.66
1068634--1068682	13	3.8	13	78	2	55	46	4	6	42	1.47
1068634--1068682	25	1.9	25	87	4	71	46	4	6	42	1.47
1069302--1069349	23	2.1	22	85	11	62	45	0	2	52	1.12
1069567--1069719	75	2.0	75	87	5	220	41	16	5	37	1.71
1070888--1070922	5	7.2	5	87	6	54	20	0	0	80	0.72
1070888--1070922	14	2.4	15	90	4	54	20	0	0	80	0.72
1070990--1071420	37	11.8	36	84	9	452	44	4	6	44	1.48
1070990--1071420	147	3.0	142	84	9	532	44	4	6	44	1.48
1070990--1071420	110	3.9	108	83	8	527	44	4	6	44	1.48
1071520--1071559	19	2.0	21	85	9	57	12	27	37	22	1.90
1072492--1072544	22	2.4	23	81	9	65	22	1	7	67	1.25
1072549--1072587	9	4.4	9	83	6	53	25	2	0	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072667--1072776	7	15.9	7	71	19	70	16	4	0	78	0.97
1072667--1072775	13	7.9	13	75	16	87	16	4	0	77	0.97
1075322--1075369	21	2.3	21	96	0	87	27	18	12	41	1.86
1091771--1091824	27	2.0	27	100	0	108	18	14	33	33	1.92
1100134--1100273	51	2.7	51	87	0	199	32	10	17	40	1.84
1100210--1100511	77	3.9	77	89	0	444	30	11	18	39	1.86
1100210--1100511	153	2.0	154	90	0	480	30	11	18	39	1.86
1100670--1100817	68	2.2	68	83	2	181	33	19	24	22	1.97
1100781--1100848	31	2.2	31	94	0	118	33	17	29	19	1.95
1100792--1100859	31	2.2	31	89	0	100	35	20	29	14	1.93
1102507--1102619	38	2.9	38	81	1	127	18	23	22	36	1.95
1102506--1102688	39	4.7	39	78	4	199	18	22	22	36	1.95
1102495--1102688	78	2.5	77	81	4	221	17	23	23	35	1.95
1105284--1105804	265	2.0	267	89	2	798	28	15	24	32	1.95
1108698--1108889	39	4.9	39	88	0	276	17	27	23	32	1.96
1113539--1113618	40	2.0	40	100	0	160	22	15	25	37	1.93
1123253--1123483	35	6.5	35	82	11	224	43	3	6	46	1.47
1123253--1123509	35	7.3	36	78	15	204	42	3	7	45	1.50
1123270--1123478	71	3.0	69	84	7	269	44	3	7	45	1.48
1126030--1126061	7	4.6	7	96	0	55	31	15	0	53	1.43
1131824--1131925	52	2.0	50	94	3	177	30	23	21	24	1.99
1132548--1132581	15	2.3	15	89	0	50	41	0	50	8	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1132617--1132664	21	2.1	22	81	11	53	29	6	0	64	1.18
1133444--1133552	42	2.6	42	81	7	123	30	16	20	33	1.94
1133887--1133923	18	2.1	18	89	0	56	0	40	16	43	1.48
1137690--1137846	40	3.9	41	82	7	187	30	20	15	33	1.93
1137878--1137988	42	2.7	41	71	16	113	25	20	22	31	1.98
1138467--1138509	16	2.8	15	86	6	59	4	4	2	88	0.70
1140707--1141217	260	2.0	253	97	2	959	30	15	23	30	1.96
1147262--1147382	64	1.9	63	84	5	163	35	21	18	24	1.95
1152254--1152375	60	2.0	61	82	7	151	55	1	4	37	1.31
1152254--1152375	30	4.0	30	78	11	115	55	1	4	37	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11