genome.fa.s9574.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009574.1 Hibiscus syriacus cultivar Beakdansim tig00116939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2686660

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  12  of  14  ( 1597 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2269622--2269655	12	2.8	12	90	0	50	55	29	0	14	1.40
2269989--2270047	32	1.9	31	83	10	77	57	10	27	5	1.52
2272086--2272124	18	2.2	18	90	0	60	61	20	0	17	1.34
2272489--2272546	20	2.9	19	90	7	89	13	18	25	41	1.88
2274016--2274095	20	4.0	20	83	6	108	21	18	38	21	1.93
2275347--2275389	20	2.2	20	95	0	77	9	16	20	53	1.70
2275947--2275996	20	2.5	20	93	0	82	22	18	20	40	1.92
2277476--2277580	53	2.0	53	88	0	156	20	37	6	35	1.79
2283725--2283818	31	3.0	32	78	4	93	32	20	18	28	1.96
2283954--2283999	21	2.1	22	84	11	60	41	10	4	43	1.59
2284477--2284627	64	2.3	65	85	6	191	28	17	19	34	1.95
2287914--2288008	31	3.1	31	80	3	111	34	21	17	26	1.95
2288142--2288177	17	2.0	19	89	10	58	38	11	5	44	1.63
2288661--2288810	64	2.3	65	85	7	191	28	17	20	34	1.95
2292874--2292908	6	5.8	6	100	0	70	17	68	0	14	1.21
2299388--2299414	13	2.1	13	100	0	54	14	22	29	33	1.94
2311153--2311193	18	2.3	18	91	4	66	63	2	4	29	1.28
2319410--2319535	23	5.4	23	84	3	162	45	14	15	24	1.84
2322534--2322602	23	3.0	23	93	0	111	40	13	8	37	1.75
2322600--2322659	12	5.2	12	73	4	52	43	16	6	33	1.74
2322603--2322661	22	2.6	23	86	5	84	38	18	6	35	1.78
2324963--2325071	14	7.8	14	71	4	67	21	4	27	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2324985--2325050	28	2.4	28	89	5	98	24	3	25	46	1.66
2325145--2325179	13	2.6	13	86	4	52	20	0	34	45	1.51
2326670--2326728	16	3.8	15	75	4	55	44	1	0	54	1.10
2328657--2328745	25	3.3	25	68	25	74	41	0	0	58	0.98
2328622--2328743	32	3.7	33	81	13	128	40	0	0	58	1.04
2328675--2328744	23	3.0	23	91	6	106	41	0	0	58	0.98
2331330--2331402	22	3.3	22	76	1	74	32	20	17	28	1.96
2332335--2332364	15	2.0	15	100	0	60	33	20	6	40	1.78
2338183--2338255	22	3.3	22	84	1	92	32	15	23	28	1.95
2346506--2346548	22	2.0	21	90	4	68	25	2	0	72	0.97
2346524--2346586	15	4.1	15	76	11	56	28	0	3	68	1.05
2346624--2346709	43	2.0	43	100	0	172	32	16	16	34	1.91
2350144--2350319	82	2.1	82	97	0	334	39	14	11	34	1.82
2355156--2355245	44	2.0	44	93	0	153	33	18	15	32	1.93
2357846--2357958	35	3.2	35	67	20	108	30	25	7	36	1.85
2357822--2357964	71	2.0	71	100	0	286	32	25	9	32	1.89
2359433--2359470	2	18.5	2	94	5	67	47	0	2	50	1.15
2365654--2365770	51	2.3	51	80	5	130	15	28	28	28	1.96
2369396--2369482	35	2.5	34	80	12	97	55	10	8	26	1.61
2370049--2370083	18	1.9	18	88	0	52	28	20	22	28	1.98
2371760--2371800	18	2.3	18	87	4	57	60	2	7	29	1.36
2375643--2375692	11	4.5	11	85	9	66	50	6	2	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2375657--2375721	22	2.9	22	79	6	60	43	7	4	44	1.53
2375733--2375785	21	2.5	21	100	0	106	49	5	7	37	1.55
2375790--2375841	13	3.8	13	73	14	50	44	1	1	51	1.23
2375781--2375841	15	4.1	15	73	12	54	42	1	3	52	1.27
2375796--2375850	27	2.0	27	85	7	74	49	3	1	45	1.30
2376149--2376194	19	2.5	19	89	3	67	50	2	4	43	1.34
2376144--2376238	26	3.7	26	73	14	81	46	4	3	46	1.38
2376200--2376252	26	2.0	26	92	7	90	47	3	0	49	1.19
2376908--2376938	15	2.1	15	93	0	53	29	22	6	41	1.78
2377060--2377182	55	2.2	55	82	2	140	21	30	5	42	1.76
2378881--2379002	45	2.7	46	82	3	149	39	7	18	35	1.78
2379080--2379181	23	4.4	23	81	7	118	18	18	25	37	1.94
2379080--2379181	46	2.2	46	86	6	136	18	18	25	37	1.94
2381769--2381806	20	1.9	20	89	10	60	36	7	2	52	1.45
2382794--2382854	21	3.1	20	76	17	65	42	4	1	50	1.33
2382817--2382868	20	2.5	21	75	6	52	46	3	0	50	1.20
2385347--2385443	20	4.8	20	80	6	92	34	27	16	21	1.95
2385387--2385451	20	3.2	20	87	8	96	38	23	16	21	1.93
2385579--2385626	22	2.2	22	96	0	87	22	43	12	20	1.86
2388088--2388143	21	2.7	21	81	10	78	28	33	12	25	1.92
2388091--2388149	21	2.7	22	78	21	63	30	32	13	23	1.93
2389562--2389702	66	2.2	64	80	9	164	31	2	17	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2390016--2390102	39	2.2	39	95	0	156	17	13	20	48	1.81
2390368--2390404	18	2.1	18	89	0	56	51	10	5	32	1.60
2390791--2390840	25	2.0	25	96	0	91	44	22	8	26	1.80
2390931--2390992	20	3.1	20	85	0	88	32	22	20	24	1.98
2393718--2393751	12	2.8	12	90	0	50	14	0	29	55	1.40
2394481--2394651	20	8.6	20	70	14	102	27	14	24	33	1.94
2394542--2394591	21	2.4	21	83	3	66	36	16	22	26	1.94
2395017--2395073	28	2.0	28	83	6	71	31	22	14	31	1.93
2399078--2399339	127	2.1	127	100	0	524	33	9	26	31	1.88
2403791--2403822	2	16.0	2	100	0	64	50	0	0	50	1.00
2408319--2408363	23	2.0	23	86	0	63	33	20	26	20	1.97
2408362--2408429	23	3.0	23	82	4	77	33	25	23	17	1.96
2412574--2412606	17	1.9	17	100	0	66	48	12	3	36	1.56
2424523--2424562	17	2.4	17	84	12	55	27	0	5	67	1.11
2428989--2429048	26	2.3	26	94	0	102	23	13	26	36	1.92
2431039--2431224	77	2.4	77	94	0	320	30	12	18	38	1.88
2431151--2431191	20	2.0	20	90	0	64	36	9	19	34	1.85
2431262--2431359	20	4.9	20	100	0	196	39	20	15	24	1.91
2431431--2431516	20	4.3	20	100	0	172	30	20	15	33	1.93
2431230--2431593	136	2.7	135	79	10	377	36	19	14	28	1.92
2431535--2431593	20	3.0	20	89	0	91	42	16	15	25	1.88
2431632--2431730	20	4.9	20	93	0	171	42	19	13	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2431499--2431687	97	1.9	97	92	0	315	38	19	14	28	1.91
2431535--2431787	137	1.8	137	88	1	382	39	18	13	27	1.89
2431789--2431833	20	2.2	21	88	4	65	26	13	28	31	1.94
2432953--2432996	3	14.7	3	100	0	88	68	0	0	31	0.90
2436293--2436449	21	7.6	21	85	6	162	31	22	22	23	1.98
2436376--2436488	20	5.6	20	86	6	165	36	16	22	24	1.94
2436309--2436493	61	3.0	62	87	7	245	33	19	22	24	1.97
2436477--2436580	21	4.9	22	79	9	126	26	24	23	25	2.00
2436477--2436580	42	2.5	42	98	0	199	26	24	23	25	2.00
2436394--2436588	61	3.1	61	80	11	211	32	21	22	24	1.98
2436414--2436588	42	4.2	42	82	10	191	31	21	22	24	1.98
2437218--2437242	5	5.0	5	100	0	50	0	20	60	20	1.37
2437343--2437512	23	7.8	23	77	11	180	38	21	20	20	1.94
2437339--2437512	65	2.7	65	93	0	294	37	21	20	20	1.94
2437439--2437523	42	2.0	42	95	0	152	36	22	20	21	1.95
2442710--2442822	20	5.6	20	77	4	127	41	17	23	16	1.89
2442725--2442841	21	5.7	21	78	4	139	41	17	24	16	1.90
2442710--2442859	41	3.6	41	96	2	266	42	17	23	16	1.88
2442852--2442903	20	2.6	20	93	0	86	26	28	19	25	1.98
2443418--2443484	19	3.5	19	87	2	98	49	23	16	10	1.77
2443480--2443644	19	9.1	19	76	15	152	12	23	21	43	1.86
2443480--2443644	33	4.6	35	79	12	140	12	23	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2443587--2443644	20	2.9	20	80	10	64	13	24	18	43	1.87
2445634--2445756	42	2.9	42	80	2	122	22	36	17	22	1.95
2445690--2445756	21	3.2	21	66	6	55	23	35	20	19	1.95
2447106--2447148	14	3.1	14	96	0	77	34	0	25	39	1.56
2447761--2448046	142	2.0	143	97	2	549	22	22	25	30	1.99
2449974--2450027	24	2.2	24	90	0	81	38	20	16	24	1.92
2451075--2451131	19	2.9	20	89	5	89	36	22	22	17	1.94
2451150--2451298	33	4.4	33	85	8	199	14	22	19	44	1.86
2451150--2451269	19	6.8	19	84	15	170	14	21	17	46	1.83
2451150--2451298	52	2.9	52	82	11	196	14	22	19	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14