genome.fa.s9574.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009574.1 Hibiscus syriacus cultivar Beakdansim tig00116939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2686660

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1597 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1722901--1723001	21	4.8	21	86	0	103	0	40	18	39	1.58
1731051--1731090	21	1.9	21	100	0	80	37	15	15	32	1.88
1731809--1731947	42	3.3	42	73	6	120	22	22	19	35	1.96
1731847--1731979	41	3.2	40	71	10	115	25	20	18	35	1.95
1731804--1732010	83	2.5	83	83	0	252	26	20	18	34	1.95
1731828--1732030	83	2.4	83	83	0	262	26	22	18	33	1.97
1739536--1739699	44	3.7	44	83	0	202	31	16	21	30	1.96
1745529--1745620	42	2.1	43	78	9	98	31	17	16	34	1.92
1745373--1745803	190	2.3	187	85	4	555	33	17	16	32	1.92
1747562--1747721	83	2.0	81	82	5	196	28	21	17	32	1.96
1748471--1748530	18	3.2	18	73	17	59	26	5	1	66	1.21
1753294--1753329	2	18.5	2	94	5	65	50	0	0	50	1.00
1756159--1756208	24	2.1	24	100	0	100	36	16	0	48	1.46
1766632--1766829	55	3.6	55	83	0	252	30	18	19	30	1.96
1767339--1767385	21	2.2	21	88	0	67	21	17	27	34	1.95
1767389--1767440	22	2.3	22	80	3	59	21	26	21	30	1.98
1773371--1773570	55	3.7	53	90	2	283	29	18	21	31	1.97
1773373--1773570	110	1.8	110	90	4	319	29	18	21	30	1.97
1774707--1774814	15	7.2	15	91	0	180	30	32	22	14	1.94
1774707--1774814	30	3.6	30	98	0	207	30	32	22	14	1.94
1774899--1774976	29	2.7	29	98	2	149	17	21	15	44	1.86
1774988--1775034	12	3.9	12	85	0	58	38	27	6	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775328--1775504	64	2.8	64	85	3	214	24	19	22	33	1.97
1775391--1775553	64	2.5	64	83	8	190	26	22	19	31	1.98
1781717--1781794	15	5.2	15	96	0	138	29	33	23	14	1.93
1781880--1781957	29	2.7	29	98	2	149	17	21	15	44	1.86
1781969--1782015	12	3.9	12	85	0	58	38	27	6	27	1.81
1782324--1782500	64	2.8	63	85	1	219	24	19	22	32	1.97
1782387--1782549	64	2.5	63	84	8	197	26	22	19	31	1.98
1783361--1783410	21	2.4	20	86	6	64	24	14	28	34	1.93
1783404--1783478	23	3.3	23	84	1	107	21	22	26	29	1.99
1783402--1783512	46	2.5	42	82	7	132	23	20	25	30	1.99
1799254--1799292	12	3.0	13	85	11	53	38	0	2	58	1.12
1799957--1799981	2	12.5	2	100	0	50	52	0	0	48	1.00
1800144--1800189	2	23.0	2	100	0	92	50	0	0	50	1.00
1802185--1802243	21	2.7	23	78	19	65	37	0	0	62	0.95
1803820--1803882	23	2.8	22	80	2	72	41	14	22	22	1.89
1803957--1804003	12	4.0	12	75	5	51	34	23	14	27	1.94
1804526--1804624	33	3.0	33	100	0	198	30	27	18	24	1.98
1807089--1807127	20	2.0	20	89	0	60	87	7	5	0	0.68
1807101--1807147	23	2.1	23	92	4	78	78	12	8	0	0.95
1807101--1807147	11	4.3	11	89	7	69	78	12	8	0	0.95
1808214--1808459	55	4.5	55	87	1	350	31	17	15	35	1.91
1808216--1808459	109	2.2	110	91	1	391	31	17	15	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810434--1810468	2	17.0	2	88	5	52	45	0	5	48	1.26
1810854--1810890	18	2.1	18	89	0	56	27	13	29	29	1.94
1811682--1811873	55	3.5	55	84	4	235	33	17	16	32	1.93
1811686--1811849	54	3.0	54	85	4	222	31	18	17	32	1.94
1812232--1812262	2	15.5	2	100	0	62	51	0	0	48	1.00
1815640--1815711	24	3.0	24	97	0	135	40	12	13	33	1.83
1816253--1816321	30	2.3	30	84	2	93	36	18	5	39	1.75
1820337--1820687	55	6.4	55	91	1	517	30	18	16	34	1.93
1820337--1820687	109	3.2	110	90	2	519	30	18	16	34	1.93
1820337--1820687	164	2.1	164	88	1	515	30	18	16	34	1.93
1821522--1821563	15	2.8	15	96	0	75	42	7	14	35	1.73
1824202--1824260	21	2.8	22	75	15	70	30	15	32	22	1.94
1824752--1824810	22	2.5	24	73	18	61	33	5	27	33	1.79
1833496--1833543	24	2.0	24	95	0	87	25	18	8	47	1.76
1833498--1833558	24	2.5	24	86	0	77	27	18	11	42	1.84
1834517--1834550	11	3.0	11	91	4	50	5	8	0	85	0.75
1834517--1834567	12	4.2	12	82	9	59	7	11	0	80	0.90
1834534--1834607	27	2.8	25	78	13	69	6	18	0	74	1.04
1843378--1843432	23	2.4	23	90	3	85	23	36	21	18	1.95
1845023--1845061	18	2.2	18	95	0	69	35	33	20	10	1.86
1853165--1853290	65	2.0	64	81	6	148	29	15	21	34	1.94
1853764--1853797	17	2.0	17	100	0	68	41	17	29	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855726--1855804	23	3.5	22	77	8	88	25	21	27	25	1.99
1855726--1855788	21	2.9	22	80	4	74	23	23	25	26	2.00
1861567--1861724	65	2.5	64	83	10	189	31	17	22	28	1.97
1869086--1869117	3	11.0	3	93	6	57	68	0	0	31	0.90
1872009--1872034	3	8.7	3	100	0	52	34	0	0	65	0.93
1873403--1873455	26	2.0	26	96	0	97	35	28	15	20	1.93
1878764--1878821	23	2.7	21	84	7	64	27	29	24	18	1.98
1893072--1893140	25	2.8	24	86	4	93	33	33	7	26	1.84
1893247--1893329	38	2.4	33	86	11	105	50	0	0	49	1.00
1896020--1896107	31	2.8	31	92	0	149	46	2	5	45	1.39
1896467--1896507	17	2.4	17	95	0	73	51	26	14	7	1.69
1899970--1900001	13	2.4	14	85	15	50	43	9	0	46	1.35
1906891--1906973	23	3.8	22	81	12	98	22	30	26	20	1.98
1912543--1912794	129	1.9	130	83	2	319	29	21	22	26	1.99
1914775--1914799	11	2.3	11	100	0	50	32	0	0	68	0.90
1915061--1915370	155	2.0	154	92	6	522	40	12	5	41	1.66
1921699--1921726	12	2.3	12	100	0	56	35	14	21	28	1.92
1923056--1923173	54	2.2	54	90	0	182	23	20	24	31	1.98
1923503--1923539	14	2.8	13	84	8	56	43	2	8	45	1.47
1923819--1923849	14	2.2	14	100	0	62	35	16	12	35	1.87
1925334--1925381	20	2.4	20	79	6	53	62	14	0	22	1.32
1925806--1925928	21	5.8	19	84	12	111	30	15	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925831--1925928	42	2.3	40	88	10	135	27	15	31	25	1.95
1927374--1927848	237	2.0	237	97	0	889	32	21	9	36	1.86
1933516--1933634	53	2.2	54	88	4	170	23	19	26	30	1.98
1933629--1933678	22	2.3	22	96	0	91	24	24	30	22	1.99
1936262--1936363	21	4.8	19	84	10	96	30	16	30	22	1.96
1936287--1936364	21	3.7	21	86	13	108	28	16	32	23	1.96
1942703--1942818	54	2.1	54	90	3	180	23	19	25	31	1.98
1945463--1945524	21	3.1	19	77	13	70	25	16	32	25	1.96
1950868--1951032	74	2.2	76	83	5	210	25	20	24	29	1.99
1958686--1958721	6	6.0	6	93	0	63	33	0	63	2	1.08
1963016--1963185	59	2.8	59	80	7	184	41	5	19	33	1.74
1974133--1974174	21	2.0	22	90	4	68	16	21	14	47	1.82
1976590--1976697	36	3.0	36	82	6	121	32	21	12	33	1.91
1976794--1976922	65	2.0	65	89	3	197	31	17	12	39	1.86
1976879--1976962	21	4.3	21	75	17	99	27	25	10	36	1.89
1976866--1976941	36	2.1	36	90	4	118	26	21	13	39	1.89
1976934--1977052	36	3.2	36	82	6	166	26	24	13	36	1.92
1976890--1977139	90	2.7	90	91	3	383	25	24	14	36	1.92
1976992--1977106	54	2.2	51	87	4	158	23	25	15	35	1.94
1977042--1977634	36	15.9	36	86	4	648	27	21	14	35	1.93
1977159--1977216	15	3.5	15	70	20	53	22	25	15	36	1.94
1977209--1977345	21	7.4	21	66	29	87	27	25	11	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1984969--1985020	20	2.6	20	96	0	95	38	26	13	21	1.90
1985076--1985269	20	9.6	20	76	8	76	35	25	19	19	1.95
1985072--1985269	40	5.0	39	81	4	200	35	26	19	19	1.95
1985076--1985268	60	3.2	60	83	0	251	35	25	19	19	1.95
1985650--1985720	33	2.2	33	92	0	115	11	22	18	47	1.80
1985841--1985895	14	3.6	14	73	21	56	41	23	25	9	1.83
1985841--1985911	33	2.2	33	94	0	124	43	25	22	8	1.81
1985907--1986004	19	5.7	19	70	22	81	10	24	22	42	1.84
1985929--1986018	14	5.7	14	74	23	81	8	25	23	42	1.83
1985912--1986026	33	3.5	33	95	0	212	9	24	20	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14