Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009574.1 Hibiscus syriacus cultivar Beakdansim tig00116939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2686660

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1597 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2615166--2615235
30
2.3
30
87
4
97
37
8
21
32
1.84
2615313--2615614
149
2.0
149
98
0
577
27
15
19
37
1.92
2615595--2615639
23
2.0
23
86
0
63
20
24
28
26
1.99
2621670--2621712
21
2.0
21
86
0
59
30
27
25
16
1.97
2621692--2621842
67
2.2
68
88
2
216
27
28
25
17
1.98
2622143--2622214
29
2.5
29
95
0
126
40
9
11
38
1.74
2622236--2622305
30
2.3
30
87
4
97
35
8
22
32
1.85
2622383--2622684
149
2.0
149
98
0
577
26
16
19
37
1.93
2622665--2622709
23
2.0
23
86
0
63
20
24
28
26
1.99
2625324--2625391
34
2.0
34
85
0
91
32
10
14
42
1.80
2626436--2626474
21
1.9
20
89
5
60
48
2
2
46
1.29
2631494--2631549
21
2.6
21
77
8
60
44
3
0
51
1.18
2634853--2634972
61
2.0
61
88
3
179
33
14
12
40
1.83
2635290--2635415
29
4.3
28
69
13
92
35
15
15
33
1.89
2643475--2643503
2
14.5
2
100
0
58
51
0
0
48
1.00
2643990--2644016
12
2.2
12
100
0
54
14
14
55
14
1.70
2645202--2645233
15
2.1
16
94
5
57
50
18
25
6
1.70
2648491--2648517
12
2.2
12
100
0
54
14
14
55
14
1.70
2649859--2649896
20
1.9
20
84
10
51
39
7
2
50
1.46
2650782--2650829
14
3.4
14
88
5
62
18
8
10
62
1.52
2650787--2650832
24
1.9
24
90
0
74
17
8
10
63
1.51
2651097--2651197
10
10.1
10
71
16
66
12
8
15
62
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2651096--2651170
23
3.4
22
78
12
82
14
8
14
62
1.53
2653577--2653619
18
2.4
18
84
0
59
37
0
37
25
1.56
2653995--2654076
29
2.8
29
94
1
137
32
14
9
42
1.79
2658733--2658814
29
2.8
29
94
1
137
32
14
9
42
1.79
2665841--2665931
46
2.0
43
80
14
96
47
4
1
47
1.29
2672797--2672976
91
2.0
91
91
4
292
40
15
23
21
1.91
2675391--2675514
63
2.0
62
88
4
187
32
20
19
27
1.97
2675390--2675517
31
4.1
31
80
9
152
33
21
18
26
1.96
2680326--2680379
24
2.3
23
87
6
74
31
12
16
38
1.87
2684346--2684397
21
2.5
21
81
3
61
38
19
25
17
1.93
2684408--2684460
20
2.7
20
90
0
79
22
28
20
28
1.99
2684999--2685038
18
2.2
18
90
0
62
50
27
17
5
1.67
2685034--2685199
20
9.1
19
73
16
127
12
22
21
43
1.86
2685039--2685115
39
2.0
39
87
5
111
9
19
25
45
1.80
2685087--2685174
33
2.6
33
90
1
131
12
25
23
38
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!