genome.fa.s9604.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009604.1 Hibiscus syriacus cultivar Beakdansim tig00116984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3548142

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 1985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3480481--3480584	52	2.0	52	96	0	190	20	24	19	36	1.95
3480533--3480740	76	2.7	76	96	0	380	25	20	20	34	1.97
3480356--3480903	122	4.4	129	77	10	461	22	22	20	34	1.97
3480682--3480830	45	3.3	45	93	0	244	24	22	19	33	1.97
3480311--3481085	371	2.0	374	88	5	1142	22	21	20	34	1.96
3479696--3481085	416	3.4	409	81	9	1492	23	21	20	35	1.96
3480772--3481085	76	4.1	76	92	0	475	22	19	20	36	1.95
3481259--3481303	3	15.0	3	90	0	72	35	0	2	62	1.08
3481430--3481517	30	2.9	30	96	0	158	18	39	21	20	1.92
3482911--3482947	19	1.9	19	88	0	56	32	0	2	64	1.07
3487005--3487050	20	2.3	19	85	14	58	26	15	8	50	1.73
3497127--3497152	12	2.2	12	100	0	52	7	30	30	30	1.85
3497471--3497543	3	25.0	3	86	5	105	61	0	0	38	0.96
3497478--3497554	18	4.4	17	76	13	77	62	1	0	36	1.04
3497905--3497962	18	3.2	18	65	26	50	18	20	8	51	1.72
3497796--3498559	113	6.8	112	92	1	974	28	17	14	39	1.89
3499286--3499749	83	5.6	83	97	0	867	36	23	14	25	1.93
3500901--3500996	7	12.7	7	78	19	88	0	17	0	82	0.67
3500900--3500997	14	6.6	14	79	15	99	0	18	0	81	0.69
3500901--3500998	24	3.9	24	81	11	117	0	17	0	82	0.67
3500901--3500999	32	3.2	32	87	5	123	0	17	0	82	0.66
3500901--3500999	25	4.0	24	81	16	105	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3511587--3511650	28	2.3	27	79	10	67	62	1	10	25	1.37
3513697--3513768	3	24.0	3	94	0	90	58	0	0	41	0.98
3515622--3515667	20	2.3	19	85	14	58	26	15	8	50	1.73
3515835--3515869	18	1.9	18	88	11	54	45	2	0	51	1.16
3516351--3516420	32	2.2	32	92	0	113	28	32	0	38	1.57
3520594--3520640	5	9.8	5	82	13	55	78	0	2	19	0.85
3520594--3520640	9	4.9	10	77	17	55	78	0	2	19	0.85
3520594--3520664	16	4.4	17	77	8	76	71	0	2	25	0.99
3520690--3520738	19	2.6	18	81	9	62	73	2	4	20	1.10
3521362--3521424	19	3.2	19	75	4	54	55	12	0	31	1.37
3523783--3523834	21	2.5	21	100	0	104	42	28	3	25	1.72
3526166--3526226	21	3.0	20	81	11	72	70	0	0	29	0.88
3529551--3529589	19	2.1	19	85	9	53	51	0	5	43	1.24
3533645--3533691	25	2.0	24	84	16	62	23	12	8	55	1.64
3533808--3533844	19	1.9	19	88	0	56	32	27	16	24	1.96
3533929--3533980	20	2.5	20	81	9	61	42	17	17	23	1.89
3533951--3534045	41	2.3	41	87	0	136	33	23	17	25	1.96
3533972--3534062	20	4.5	20	71	8	76	28	26	19	25	1.99
3534881--3534934	24	2.2	24	93	0	90	20	18	20	40	1.91
3537192--3537226	18	1.9	18	94	0	61	54	25	2	17	1.57
3537284--3537566	140	2.0	140	97	0	539	27	13	16	43	1.85
3537537--3537667	20	6.8	20	79	10	148	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3537565--3537591	14	1.9	14	100	0	54	48	29	14	7	1.71
3537795--3537947	62	2.4	63	94	5	263	51	16	2	28	1.58
3537925--3537961	14	2.6	14	100	0	74	48	21	0	29	1.50
3539021--3539390	184	2.0	183	93	1	634	42	3	8	45	1.51
3540122--3540223	21	4.9	21	76	9	73	26	18	33	21	1.96
3540101--3540223	42	2.9	41	80	4	138	26	17	34	21	1.96
3540698--3540741	20	2.2	20	95	0	79	50	22	13	13	1.77
3540728--3540776	20	2.5	20	86	0	71	34	26	18	20	1.95
3540768--3540833	33	2.0	34	84	3	89	46	19	19	13	1.83
3540834--3540871	20	1.9	20	94	0	67	13	21	18	47	1.82
3540838--3540922	33	2.5	34	86	1	118	16	18	17	47	1.84
3542833--3542922	20	4.6	20	77	1	74	44	22	16	16	1.86
3542896--3542950	19	3.2	18	75	24	64	49	23	16	10	1.77
3543332--3543378	22	2.1	22	96	0	85	19	10	44	25	1.82
3543545--3543718	20	8.6	20	76	9	165	24	17	25	32	1.97
3543585--3543659	21	3.6	21	72	16	75	21	14	25	38	1.91
3543565--3543718	41	3.8	41	89	2	222	24	17	25	33	1.96
3543545--3543718	61	2.9	61	77	9	158	24	17	25	32	1.97
3543733--3543778	19	2.4	19	88	3	65	23	15	30	30	1.95
3543742--3543780	19	2.1	19	95	0	69	23	15	28	33	1.95
3545941--3545977	15	2.4	16	86	4	58	75	5	2	16	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!