genome.fa.s9604.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009604.1 Hibiscus syriacus cultivar Beakdansim tig00116984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3548142

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184453--184620	45	3.8	45	89	3	252	29	20	7	42	1.78
186687--186751	30	2.2	29	83	8	78	33	13	4	47	1.64
190141--190207	3	23.0	3	81	6	75	59	0	2	37	1.13
192711--192772	14	4.2	14	74	15	54	58	1	0	40	1.08
193146--193226	37	2.2	37	84	4	101	44	18	14	22	1.86
197278--197416	44	3.2	45	63	21	114	50	11	11	26	1.72
197273--197449	87	2.0	86	98	1	345	51	10	11	26	1.69
199609--199820	115	1.8	115	86	2	309	42	10	10	35	1.74
200948--200973	13	2.0	13	100	0	52	0	30	23	46	1.53
201468--202148	235	2.9	237	76	13	602	26	19	15	38	1.91
201874--202262	110	3.5	113	90	5	605	26	20	14	38	1.91
202100--202413	150	2.1	150	92	4	526	26	21	14	38	1.91
202207--202302	40	2.4	39	87	1	147	19	22	9	47	1.78
202450--202616	73	2.3	75	87	3	241	34	20	20	25	1.97
203287--203337	22	2.3	22	89	0	84	41	13	9	35	1.78
205786--206000	112	1.9	113	92	0	360	30	20	16	33	1.95
210102--210146	20	2.2	20	80	0	54	55	6	13	24	1.62
211073--211130	22	2.4	24	77	11	66	63	3	0	32	1.11
211119--211180	26	2.4	25	78	7	70	62	3	4	29	1.31
211130--211190	26	2.3	27	80	8	72	57	4	8	29	1.49
212563--212616	15	3.5	15	80	7	63	24	1	0	74	0.92
212564--212615	24	2.2	24	83	13	63	21	1	0	76	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213403--213436	17	2.0	17	100	0	68	35	17	29	17	1.93
219516--219582	26	2.6	25	76	15	66	59	2	0	37	1.13
219568--219620	22	2.5	21	82	17	65	58	3	1	35	1.27
219578--219629	22	2.2	24	80	6	63	61	3	1	32	1.25
220986--221100	3	37.7	3	84	3	122	59	1	0	39	1.08
223242--223296	14	3.9	14	76	23	62	61	0	7	30	1.23
223250--223293	13	3.3	13	76	17	54	63	0	6	29	1.20
223906--223939	16	2.1	17	94	5	61	23	2	5	67	1.26
223906--223943	16	2.4	16	91	8	60	28	2	5	63	1.30
226286--226358	34	2.2	34	92	2	121	38	1	24	35	1.64
228082--228128	25	1.9	24	86	4	67	63	0	2	34	1.06
228840--228913	15	4.2	18	65	21	50	48	1	1	48	1.18
228825--228899	36	2.1	37	82	2	89	45	1	2	50	1.24
228842--228929	26	3.3	25	70	12	70	47	2	1	48	1.21
228895--228977	32	2.6	32	81	12	84	50	2	0	46	1.14
228931--228989	32	1.9	31	83	10	77	54	3	1	40	1.27
229029--229105	25	3.2	25	75	3	77	53	0	0	46	1.00
229078--229158	23	3.8	20	66	16	54	44	0	2	53	1.14
229291--229331	14	2.9	15	82	10	50	36	19	2	41	1.65
236201--236300	25	4.0	25	77	3	112	24	23	22	31	1.99
236298--236344	24	2.0	24	91	0	76	19	23	25	31	1.98
238954--239001	23	2.1	23	84	0	60	39	6	16	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239459--239793	162	2.1	162	93	0	571	29	16	11	42	1.83
239741--239981	111	2.2	111	94	0	419	26	16	14	43	1.85
240077--240127	20	2.5	20	93	3	84	17	15	21	45	1.86
240237--240691	112	4.1	111	89	3	663	26	15	13	44	1.83
240237--240691	220	2.1	219	89	3	682	26	15	13	44	1.83
240961--240994	7	5.1	7	92	7	54	85	0	0	14	0.60
240961--240994	6	5.3	6	96	3	50	85	0	0	14	0.60
240961--240994	13	2.6	13	82	17	52	85	0	0	14	0.60
247307--247380	20	3.7	20	81	0	76	52	14	10	21	1.72
247345--247391	20	2.3	20	88	0	67	51	14	10	23	1.74
253117--253222	55	1.9	55	98	0	203	41	11	14	33	1.81
256561--256654	23	4.0	24	84	5	131	32	23	21	22	1.98
257973--258315	45	7.6	45	78	10	287	30	20	9	39	1.84
258016--258315	90	3.3	89	81	5	340	30	21	10	38	1.86
258008--258315	135	2.3	133	84	4	386	30	21	9	38	1.85
260517--260551	16	2.1	17	89	5	54	57	28	0	14	1.38
268355--268452	44	2.2	45	78	5	110	35	14	17	32	1.90
284645--284684	21	1.9	21	94	0	71	32	25	22	20	1.98
287807--287875	23	3.0	23	86	0	93	27	26	26	20	1.99
287891--288108	103	2.1	103	96	0	400	37	23	13	25	1.91
299617--299651	13	2.7	13	95	0	61	28	20	5	45	1.73
301340--301391	24	2.2	24	82	0	59	40	19	21	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301383--301454	23	3.1	23	78	4	72	36	25	16	22	1.94
301391--301459	24	2.9	24	78	2	77	34	23	18	23	1.96
302082--302128	20	2.3	20	100	0	94	21	25	14	38	1.92
303330--303397	23	2.7	25	80	11	68	47	7	4	41	1.51
303953--304143	95	2.0	95	100	0	382	36	24	2	36	1.68
304245--305146	453	2.0	453	100	0	1804	39	21	5	33	1.77
308459--308592	48	2.8	48	97	0	250	41	24	16	17	1.89
308610--308668	22	2.7	22	94	0	100	30	10	16	42	1.82
308967--309012	16	2.9	16	90	0	74	30	17	8	43	1.79
309313--309480	2	83.0	2	70	12	103	45	9	2	41	1.52
309557--309584	2	14.0	2	100	0	56	50	0	0	50	1.00
318153--318209	28	2.0	28	100	0	114	49	10	22	17	1.77
318767--318912	50	3.1	41	69	29	114	19	28	28	23	1.98
318767--318920	49	3.1	50	94	4	269	20	29	27	22	1.98
338346--338383	19	2.0	19	100	0	76	36	10	26	26	1.89
340240--340277	20	2.0	20	89	5	60	26	2	5	65	1.27
345257--345579	124	2.6	123	77	9	348	35	20	17	26	1.95
346704--346754	20	2.5	20	80	3	57	78	3	11	5	1.06
349092--349316	51	4.5	50	77	11	221	25	12	13	47	1.79
349075--349308	96	2.3	101	77	9	264	27	14	13	44	1.82
352510--352550	8	5.1	8	96	0	73	24	9	26	39	1.86
356345--356501	55	2.9	53	90	6	228	35	12	19	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356678--357273	68	8.8	68	89	0	888	29	13	24	32	1.93
357224--357622	81	4.9	81	87	2	568	35	12	22	30	1.91
357591--357649	29	2.0	29	100	0	118	42	10	23	23	1.85
357514--357733	111	2.0	110	84	2	289	39	10	23	26	1.88
367787--367889	3	34.7	3	98	1	199	66	0	33	0	0.92
372619--372686	30	2.3	30	92	0	109	25	20	23	30	1.98
373772--373851	9	8.9	9	76	16	69	60	1	0	38	1.05
373776--373872	35	2.9	33	79	17	112	58	1	0	40	1.05
373790--373854	9	6.6	10	78	16	73	58	0	0	41	0.98
373790--373854	20	3.3	19	81	12	78	58	0	0	41	0.98
373790--373855	29	2.2	30	91	5	116	57	0	0	42	0.98
373790--373865	9	8.2	9	74	20	68	56	0	0	43	0.99
373860--373886	14	1.9	14	100	0	54	74	0	3	22	0.98
373919--373977	28	2.1	28	84	3	75	49	1	3	45	1.28
377269--377308	18	2.2	18	90	0	71	32	10	32	25	1.89
379296--379352	20	2.8	19	82	10	69	28	17	26	28	1.98
380072--380155	32	2.6	32	88	0	132	29	22	9	38	1.86
393649--393687	20	2.0	20	89	0	60	30	0	5	64	1.15
400900--401132	20	11.6	20	83	2	272	24	17	21	36	1.94
401672--401719	5	9.8	5	78	13	55	54	0	0	45	0.99
401672--401725	12	4.6	12	82	17	60	51	0	0	48	1.00
402772--402814	2	21.5	2	83	9	52	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410028--410087	29	2.0	30	83	3	77	46	8	15	30	1.74
411249--411294	20	2.4	19	85	3	65	43	0	19	36	1.51
412581--412683	26	4.0	26	85	2	145	33	14	26	26	1.95
415175--415265	44	2.1	44	87	4	130	30	15	16	37	1.90
416159--416380	103	2.2	102	78	7	234	37	4	22	34	1.76
418310--418343	17	2.0	17	88	0	50	52	20	2	23	1.60
420952--421258	53	5.8	53	83	3	341	24	25	19	30	1.98
421001--421258	105	2.4	106	87	2	367	22	26	20	30	1.98
421480--421594	42	2.8	41	84	4	131	33	20	17	28	1.96
421633--421709	22	3.6	21	71	15	68	31	23	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17