genome.fa.s9604.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009604.1 Hibiscus syriacus cultivar Beakdansim tig00116984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3548142

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  8  of  17  ( 1985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331653--1331714	32	1.9	32	93	0	106	41	12	12	32	1.81
1332150--1332276	8	15.5	8	70	15	73	16	5	0	77	1.00
1332144--1332275	30	4.5	29	72	20	87	17	5	0	76	1.01
1332158--1332214	15	3.7	15	78	17	64	22	1	0	75	0.90
1332148--1332275	59	2.2	58	80	6	141	16	5	0	77	1.00
1332230--1332258	11	2.7	11	94	5	51	0	13	0	86	0.58
1332201--1332307	55	1.9	57	81	11	132	13	9	1	75	1.11
1332201--1332323	55	2.2	57	78	12	130	14	8	1	74	1.13
1332363--1332392	15	2.0	15	100	0	60	20	20	0	60	1.37
1334874--1335292	151	2.8	148	92	4	684	26	15	21	36	1.93
1335520--1335559	16	2.6	15	84	4	53	50	0	15	35	1.44
1340021--1340070	21	2.4	21	74	9	50	28	10	20	42	1.84
1339955--1340405	149	3.0	149	92	0	735	27	14	20	37	1.92
1343726--1343787	31	2.0	31	100	0	124	16	12	29	41	1.85
1346876--1347013	41	3.4	42	81	6	142	34	25	17	23	1.96
1346879--1346993	20	5.7	20	81	6	124	31	26	18	23	1.97
1347180--1347223	22	2.0	22	95	0	79	20	45	15	18	1.85
1347502--1347544	20	2.2	20	91	0	68	11	18	18	51	1.76
1347668--1347722	25	2.2	24	78	15	58	20	9	18	52	1.71
1348844--1348892	18	2.7	18	93	0	89	28	44	12	14	1.81
1349437--1349481	20	2.3	20	84	3	65	37	15	24	22	1.93
1349521--1349626	20	5.3	20	88	6	135	14	23	25	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1349552--1349652	20	5.1	20	91	0	94	19	18	25	35	1.95
1349557--1349643	40	2.2	40	87	0	120	16	20	27	35	1.94
1349995--1350062	21	3.3	20	74	8	66	25	39	16	19	1.91
1349985--1350074	40	2.2	42	88	4	139	22	41	15	21	1.90
1351472--1351510	14	2.8	14	84	0	51	35	0	17	46	1.49
1351733--1351788	20	2.8	20	91	0	85	16	21	21	41	1.90
1352011--1352084	20	3.7	20	94	0	121	27	18	28	25	1.98
1352020--1352128	20	5.4	20	81	6	112	23	17	28	30	1.97
1352118--1352169	20	2.5	21	87	3	70	21	23	17	38	1.93
1352923--1352955	16	2.1	16	94	0	57	60	24	9	6	1.49
1353015--1353081	16	4.3	16	86	3	93	59	14	10	14	1.60
1353023--1353087	32	2.0	32	90	0	103	58	18	10	12	1.62
1354164--1354209	24	1.9	24	86	0	65	60	17	8	13	1.56
1354189--1354240	14	4.0	14	80	19	76	51	26	13	7	1.67
1354197--1354250	24	2.2	24	80	0	72	46	27	16	9	1.78
1359159--1359185	5	5.4	5	100	0	54	18	0	0	81	0.69
1360486--1360512	10	2.7	10	100	0	54	88	0	0	11	0.50
1360828--1360876	20	2.5	20	93	0	80	4	46	6	42	1.47
1361879--1361906	10	2.8	10	100	0	56	82	7	0	10	0.85
1361991--1362079	19	4.3	21	77	12	69	46	6	3	43	1.46
1362020--1362079	19	3.1	19	85	2	84	46	8	0	45	1.33
1362049--1362131	22	3.4	23	76	18	80	42	8	1	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365330--1365407	9	8.3	10	78	13	51	74	0	10	15	1.07
1365315--1365406	5	19.2	5	72	18	54	76	1	8	14	1.08
1365378--1365406	13	2.2	13	100	0	58	79	0	0	20	0.74
1365449--1365572	9	13.2	9	72	16	51	67	0	5	25	1.18
1365516--1365576	3	21.0	3	78	18	67	67	0	1	31	1.01
1365682--1365715	4	9.0	4	87	12	54	79	0	0	20	0.73
1365857--1365941	3	28.3	3	92	4	145	68	0	1	30	0.97
1367779--1367810	14	2.3	14	94	0	55	15	15	18	50	1.79
1367780--1367830	24	2.1	24	88	0	75	17	11	15	54	1.70
1368567--1368611	16	2.8	16	96	0	81	6	15	24	53	1.66
1371926--1371951	10	2.6	10	100	0	52	34	0	0	65	0.93
1372205--1372264	29	2.1	29	87	6	86	25	5	5	65	1.34
1372256--1372354	35	3.0	33	80	15	116	41	5	1	52	1.30
1372322--1372386	29	2.2	30	86	5	87	36	9	0	53	1.33
1372266--1372363	32	3.0	32	79	16	94	40	5	1	53	1.30
1372545--1372605	29	2.1	29	96	0	113	68	3	1	26	1.14
1372759--1372817	30	2.0	30	86	6	84	16	27	8	47	1.76
1373257--1373281	11	2.3	11	100	0	50	24	12	20	44	1.85
1375548--1375622	29	2.6	29	91	0	105	54	9	6	29	1.58
1375641--1375710	23	3.1	22	89	4	104	37	1	1	60	1.15
1377019--1377068	22	2.3	22	85	0	64	20	24	26	30	1.98
1381731--1381805	29	2.6	29	89	0	114	54	9	6	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381831--1381915	12	7.7	11	68	15	59	32	0	2	64	1.06
1381826--1381914	22	4.0	22	89	1	142	35	0	2	61	1.08
1383175--1383212	13	2.9	13	100	0	76	31	28	15	23	1.96
1384956--1385085	66	2.0	66	81	3	154	21	21	20	36	1.96
1386701--1386745	15	2.8	16	80	6	56	33	31	24	11	1.90
1395598--1396046	147	3.0	146	84	3	551	34	17	15	33	1.91
1395912--1396005	42	2.3	42	83	5	111	31	21	18	28	1.96
1395658--1396113	147	3.1	146	84	3	540	35	18	15	31	1.91
1395691--1396113	148	2.9	146	85	4	451	34	18	15	31	1.92
1401063--1401111	15	3.1	16	78	21	59	53	0	14	32	1.41
1401063--1401126	31	2.0	32	84	3	85	54	3	10	31	1.51
1409018--1409160	21	6.8	21	88	8	154	39	23	20	17	1.92
1414014--1414279	36	7.4	36	85	2	311	36	23	19	20	1.95
1414014--1414279	108	2.5	108	83	3	345	36	23	19	20	1.95
1414649--1415083	51	8.5	51	87	5	560	32	17	24	24	1.97
1414649--1415083	101	4.2	102	84	6	560	32	17	24	24	1.97
1414849--1415391	55	10.1	54	80	9	362	30	15	26	27	1.96
1415073--1415368	161	1.8	160	91	2	495	29	14	28	27	1.96
1415057--1415320	106	2.5	108	90	3	408	28	14	29	27	1.95
1418956--1419028	18	3.8	18	77	13	83	20	17	31	30	1.96
1420717--1420755	2	19.5	2	100	0	78	51	0	0	48	1.00
1420755--1420811	2	28.5	2	100	0	114	50	0	49	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1423928--1423984	3	19.0	3	79	16	57	31	0	0	68	0.90
1424038--1424153	33	3.5	33	82	3	135	42	18	11	28	1.84
1431353--1431387	13	2.7	13	86	0	52	11	25	0	62	1.28
1433985--1434027	20	2.2	20	86	0	59	30	13	20	34	1.92
1436376--1436404	7	4.1	7	100	0	58	27	27	13	31	1.94
1438293--1439078	110	7.2	110	92	1	1285	35	23	17	24	1.96
1439020--1439121	43	2.4	43	94	0	177	42	24	16	16	1.88
1438908--1439231	153	2.1	153	92	0	531	37	24	16	21	1.94
1438798--1439317	263	2.0	259	89	1	788	35	23	17	23	1.95
1439061--1439317	110	2.4	106	86	2	334	36	23	17	23	1.95
1439351--1439943	84	7.1	84	76	4	480	31	24	19	24	1.98
1439400--1439956	169	3.3	167	80	3	588	31	23	19	25	1.98
1440286--1440338	26	2.0	26	86	13	74	30	0	0	69	0.88
1440795--1440827	2	16.5	2	100	0	66	48	0	0	51	1.00
1440967--1440993	12	2.2	12	100	0	54	37	7	0	55	1.28
1444527--1444602	28	2.8	28	95	2	136	38	6	1	53	1.35
1446065--1446210	76	1.9	76	93	5	251	45	4	9	40	1.56
1447574--1447632	30	2.0	30	100	0	118	33	11	3	50	1.56
1448826--1448879	26	2.1	26	96	0	99	44	7	14	33	1.73
1448987--1449136	56	2.7	56	87	0	210	28	10	12	50	1.71
1453418--1453508	31	2.9	31	75	12	96	46	12	7	34	1.70
1458519--1458552	17	2.0	17	100	0	68	35	11	35	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1460388--1460588	65	3.1	65	80	11	234	27	17	23	30	1.97
1462488--1462538	23	2.2	23	96	0	93	23	5	41	29	1.78
1462792--1462816	13	1.9	13	100	0	50	52	8	8	32	1.60
1463240--1463320	23	3.6	22	75	14	85	25	23	24	25	2.00
1463243--1463339	44	2.2	44	83	7	117	26	21	23	27	1.99
1469132--1469332	65	3.1	65	81	11	243	27	17	23	30	1.97
1469972--1470034	30	2.1	30	85	2	83	34	6	15	42	1.73
1471749--1472777	4	257.8	4	99	0	2044	25	25	0	49	1.50
1473016--1473069	26	2.1	26	100	0	108	42	7	16	33	1.76
1473174--1473315	56	2.6	56	85	7	200	30	15	7	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17