genome.fa.s9624.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009624.1 Hibiscus syriacus cultivar Beakdansim tig00117016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8249038

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   

This is table  38  of  38  ( 4514 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8062341--8062373	17	1.9	17	93	0	57	21	18	15	45	1.85
8068316--8068340	2	12.5	2	100	0	50	48	0	0	52	1.00
8068865--8068905	18	2.3	18	87	8	57	4	34	14	46	1.66
8070482--8070566	21	3.8	23	78	10	79	20	24	30	24	1.98
8070482--8070566	23	3.9	22	81	6	91	20	24	30	24	1.98
8075583--8075670	24	3.5	24	91	8	149	12	21	50	15	1.77
8075583--8075663	27	3.1	27	94	5	141	11	22	51	14	1.73
8080976--8081051	40	1.9	40	97	0	143	50	18	11	19	1.78
8082088--8082185	48	2.0	50	84	7	130	43	24	10	21	1.83
8083208--8083263	22	2.5	23	85	8	71	30	12	19	37	1.89
8085267--8085338	2	37.0	2	81	10	78	50	0	1	48	1.09
8089082--8089268	49	3.8	49	85	1	259	39	13	20	26	1.90
8091783--8092018	59	4.0	59	83	6	325	37	9	19	33	1.85
8091940--8092098	81	2.0	81	87	5	232	35	10	20	33	1.86
8092021--8092153	59	2.3	59	89	2	196	34	12	21	31	1.90
8091881--8092151	140	1.9	140	83	8	347	36	9	20	33	1.86
8097067--8097473	139	2.9	139	82	2	503	24	16	28	30	1.96
8098360--8098613	127	2.0	124	81	6	289	22	12	13	50	1.75
8098500--8098702	112	1.8	112	87	6	304	21	16	16	44	1.86
8098791--8098826	16	2.2	16	90	0	54	27	11	5	55	1.57
8100178--8100216	20	2.0	20	89	0	60	33	20	10	35	1.86
8100702--8100776	21	3.1	24	85	12	93	52	0	5	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8100718--8100784	23	2.9	23	75	22	68	52	0	5	41	1.26
8101009--8101077	35	2.1	32	83	8	84	52	2	13	31	1.55
8101047--8101149	39	2.7	39	75	13	97	43	3	17	34	1.67
8101160--8101203	19	2.3	19	96	0	79	72	0	4	22	1.02
8101537--8101614	31	2.5	30	83	6	95	51	11	6	30	1.63
8101938--8101999	21	3.0	20	73	17	54	54	4	1	38	1.31
8107148--8107172	12	2.1	12	100	0	50	40	8	16	36	1.77
8107094--8107232	72	1.9	72	82	5	174	40	6	20	33	1.78
8108433--8108470	16	2.4	16	90	0	67	44	15	13	26	1.83
8113517--8113600	21	3.8	21	65	21	55	35	16	16	30	1.92
8113500--8113588	45	2.0	45	93	4	153	35	14	19	30	1.91
8115991--8116024	17	2.0	17	100	0	68	47	5	5	41	1.52
8117034--8117120	3	29.3	3	83	6	106	0	26	2	71	0.98
8117064--8117118	19	2.8	19	84	15	69	0	21	1	76	0.88
8117073--8117133	19	3.3	17	78	15	59	0	18	3	78	0.88
8119908--8119951	24	1.9	22	86	9	61	11	9	4	75	1.19
8144356--8144427	17	4.2	17	69	1	54	31	12	11	44	1.77
8150909--8150936	14	2.0	14	100	0	56	50	14	7	28	1.69
8153288--8153340	19	2.6	20	82	11	63	37	11	7	43	1.69
8155857--8155890	17	2.0	17	88	0	50	32	11	2	52	1.53
8157028--8157052	13	1.9	13	100	0	50	24	32	0	44	1.54
8163550--8163584	17	2.1	17	89	5	54	65	11	14	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8166538--8166575	15	2.5	15	95	0	67	18	44	5	31	1.72
8183127--8183165	9	4.4	9	83	6	53	7	5	0	87	0.68
8183127--8183168	8	5.0	8	86	11	57	9	4	0	85	0.72
8187021--8187049	8	3.6	8	100	0	58	24	0	0	75	0.80
8191790--8191823	16	2.2	15	94	5	59	79	5	14	0	0.91
8191790--8191829	16	2.6	16	88	4	55	77	7	12	2	1.07
8193389--8193460	36	2.0	36	89	5	110	26	19	15	38	1.91
8193611--8193696	36	2.4	37	76	11	88	24	17	13	44	1.85
8193636--8193706	36	2.0	36	83	5	90	26	19	11	42	1.85
8194223--8194976	106	7.0	105	86	3	900	35	22	18	24	1.95
8194223--8194922	216	3.3	216	89	1	1023	35	22	18	24	1.95
8196204--8196246	18	2.5	17	85	7	61	25	4	2	67	1.22
8196511--8196540	8	3.6	8	91	8	51	13	3	0	83	0.77
8196723--8196802	40	2.0	40	86	9	112	31	5	7	56	1.49
8196727--8196822	40	2.5	37	76	15	97	30	6	5	58	1.45
8201997--8202056	24	2.5	25	81	8	79	23	8	18	50	1.74
8202411--8202732	33	9.9	33	78	7	286	29	13	16	40	1.87
8202468--8202525	28	2.1	28	90	0	89	31	18	17	32	1.94
8202408--8202688	94	2.9	95	80	5	298	28	13	17	40	1.88
8202580--8202629	15	3.1	15	73	15	55	30	10	20	40	1.85
8208175--8208236	22	2.7	23	85	9	83	16	24	37	22	1.94
8208153--8208237	22	3.9	22	73	14	77	15	24	36	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8222547--8222619	2	36.5	2	100	0	146	50	0	0	49	1.00
8223091--8223128	20	1.9	20	88	0	58	28	34	5	31	1.80
8229552--8229711	32	5.0	32	72	6	99	35	4	9	50	1.55
8229734--8229778	23	2.0	22	83	16	56	31	11	13	44	1.78
8231516--8231555	15	2.5	17	76	19	50	35	2	17	45	1.62
8243227--8243516	46	6.3	46	89	3	433	24	22	10	43	1.84
8243891--8243936	20	2.2	22	84	7	60	26	26	15	32	1.95
8245157--8245282	55	2.3	55	88	1	180	31	15	20	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38

The End!