genome.fa.s117.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold117
Parameters: 2 7 7 80 10 50 1000
Length:  3231771

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3141259--3141330	30	2.3	33	83	11	89	44	1	1	52	1.18
3142877--3142914	20	1.9	20	89	10	60	55	0	0	44	0.99
3145441--3145467	2	13.5	2	100	0	54	48	0	0	51	1.00
3146878--3146907	2	15.0	2	92	0	51	50	3	0	46	1.18
3150796--3150842	18	2.6	19	83	6	62	63	0	34	2	1.06
3150975--3151026	21	2.4	23	75	12	56	30	0	3	65	1.10
3152140--3152195	21	2.5	23	77	13	64	17	7	10	64	1.47
3153295--3153328	18	1.9	17	88	5	50	41	14	0	44	1.45
3157907--3157933	2	13.5	2	100	0	54	51	0	0	48	1.00
3160909--3160996	43	2.0	44	81	14	103	48	0	1	50	1.08
3160935--3161001	25	2.7	25	71	11	66	47	0	0	52	1.00
3161902--3161942	2	21.0	2	95	5	75	48	0	0	51	1.00
3161921--3162004	42	2.0	42	100	0	168	40	7	9	42	1.65
3162182--3162218	2	18.5	2	100	0	74	51	0	48	0	1.00
3162667--3162705	19	2.1	19	90	4	62	69	0	0	30	0.89
3162995--3163051	20	2.8	21	76	12	57	42	1	3	52	1.28
3164889--3164927	20	2.0	20	85	10	53	58	0	0	41	0.98
3164910--3164969	23	2.7	22	80	14	61	65	3	0	31	1.09
3166357--3166406	19	2.5	20	75	12	50	44	0	0	56	0.99
3166384--3166456	34	2.2	34	83	11	89	47	0	0	52	1.00
3170718--3170747	16	1.9	16	93	6	53	70	0	0	30	0.88
3174540--3174895	178	2.0	179	94	0	633	25	15	20	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3182731--3182875	38	3.8	38	79	3	130	33	27	8	31	1.86
3187475--3187513	21	1.9	20	89	5	60	46	2	5	46	1.38
3196922--3196957	13	2.5	15	82	17	58	38	11	5	44	1.63
3198278--3198349	36	2.0	37	83	2	92	51	1	4	43	1.29
3198390--3198430	16	2.5	17	84	7	50	31	0	2	65	1.05
3198491--3198522	3	10.7	3	100	0	64	31	0	0	68	0.90
3199556--3199604	18	2.5	19	77	12	55	38	4	6	51	1.46
3199601--3199673	37	2.0	37	86	0	101	39	5	4	50	1.44
3199638--3199677	21	1.9	21	94	0	71	40	5	0	55	1.22
3199707--3199804	21	4.7	22	81	9	82	33	4	6	56	1.43
3199640--3199783	74	2.0	73	81	9	168	35	4	5	54	1.45
3199767--3199812	21	2.2	21	84	0	56	34	2	6	56	1.37
3199838--3199869	16	2.0	16	93	0	55	46	0	3	50	1.17
3200273--3200318	22	2.1	22	84	8	58	45	0	0	54	0.99
3200860--3200903	4	11.0	4	90	0	70	45	0	4	50	1.22
3203329--3203377	12	4.2	12	75	15	50	28	0	2	69	1.00
3204413--3204460	21	2.3	20	86	10	62	54	2	0	43	1.12
3204370--3204454	44	1.9	42	84	13	109	54	2	0	43	1.13
3207451--3207502	26	1.9	29	85	14	76	71	0	0	28	0.87
3207455--3207524	24	3.0	23	82	12	72	68	1	0	30	0.98
3210932--3210970	20	2.0	20	85	10	53	35	33	20	10	1.86
3212494--3212539	14	3.1	15	76	23	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214207--3214277	15	4.7	15	72	16	56	49	5	0	45	1.26
3214937--3215044	20	5.8	19	77	18	111	27	17	13	40	1.88
3214954--3215023	33	2.1	33	100	0	140	27	18	14	40	1.89
3214937--3215043	53	2.0	53	87	7	155	28	16	14	41	1.87
3214974--3215004	13	2.4	13	100	0	62	29	16	16	38	1.90
3217366--3217645	79	3.6	78	82	5	316	28	24	12	33	1.92
3217581--3217692	51	2.2	51	78	0	125	31	23	11	33	1.90
3217550--3217881	158	2.1	158	79	4	348	28	25	12	33	1.92
3217743--3217857	51	2.3	50	80	11	135	30	27	8	33	1.87
3217708--3218044	130	2.6	128	75	7	338	28	24	10	35	1.90
3224873--3224933	18	3.5	17	78	13	61	68	1	0	29	0.99
3224880--3224937	19	3.1	18	85	5	71	68	0	0	31	0.89
3224894--3224934	19	2.1	19	95	4	73	73	0	0	26	0.84
3227750--3227783	2	17.0	2	100	0	68	50	0	0	50	1.00
3230077--3230101	2	12.5	2	100	0	50	52	0	0	48	1.00
3230606--3230642	2	18.5	2	100	0	74	51	0	0	48	1.00
3231140--3231170	13	2.3	14	94	5	55	54	12	0	32	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!