Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Scaffold117 Parameters: 2 7 7 80 10 50 1000 Length: 3231771

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2101 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993446--993475
2
15.0
2
100
0
60
50
0
0
50
1.00
1000238--1000270
2
16.5
2
100
0
66
48
0
0
51
1.00
1000505--1000545
19
2.2
19
86
8
57
53
0
0
46
1.00
1001618--1001667
16
3.3
15
81
18
59
52
4
0
44
1.20
1001613--1001681
30
2.5
25
75
24
68
53
2
0
43
1.15
1006405--1006448
17
2.3
19
81
18
56
29
20
20
29
1.98
1009830--1009959
67
1.9
67
92
0
215
42
10
4
42
1.60
1010359--1010405
23
2.1
23
84
4
60
38
2
4
55
1.31
1016534--1016559
3
8.7
3
100
0
52
30
0
0
69
0.89
1021790--1021832
21
2.0
21
86
0
59
67
4
0
27
1.10
1023425--1023460
16
2.2
17
90
5
56
50
0
0
50
1.00
1024399--1024441
3
14.3
3
100
0
86
67
0
0
32
0.91
1028453--1028507
24
2.3
24
84
6
67
38
29
3
29
1.74
1030460--1030551
30
3.3
30
65
22
90
50
22
14
13
1.77
1030447--1030561
54
2.1
54
98
0
221
49
20
15
13
1.79
1035423--1035451
12
2.3
13
94
5
51
48
0
0
51
1.00
1035950--1035995
18
2.5
18
86
10
58
63
0
2
34
1.07
1035945--1035996
18
2.8
18
72
18
52
59
0
1
38
1.08
1036450--1036487
18
2.1
18
95
0
67
42
5
2
50
1.39
1038065--1038098
5
6.6
5
89
3
50
41
0
23
35
1.55
1043613--1043641
4
7.2
4
100
0
58
27
0
48
24
1.51
1044842--1044868
2
13.5
2
100
0
54
0
51
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1045911--1045940
6
5.0
6
95
0
51
20
16
0
63
1.31
1046330--1046359
2
15.0
2
92
0
51
3
46
0
50
1.18
1046868--1046899
3
10.7
3
93
0
55
37
34
28
0
1.57
1047994--1048060
27
2.5
26
81
9
73
50
2
2
43
1.32
1048002--1048069
26
2.6
27
81
6
77
51
2
2
42
1.32
1048611--1048638
2
14.0
2
100
0
56
50
0
0
50
1.00
1049734--1049759
2
13.0
2
100
0
52
50
0
0
50
1.00
1057117--1057158
18
2.3
19
91
4
68
47
0
0
52
1.00
1057373--1057406
18
1.9
18
94
5
61
64
0
0
35
0.94
1059487--1059532
22
2.1
22
95
0
83
39
0
23
36
1.55
1059724--1059792
21
3.4
20
80
9
70
53
15
2
27
1.56
1060308--1060347
16
2.6
15
80
7
53
45
0
0
55
0.99
1060354--1060401
22
2.2
23
85
7
64
37
6
2
54
1.38
1060752--1060778
2
13.5
2
100
0
54
48
0
51
0
1.00
1068158--1068188
2
15.5
2
100
0
62
0
48
0
51
1.00
1072884--1072921
17
2.2
17
86
9
51
57
0
0
42
0.98
1072888--1072921
15
2.1
17
89
10
54
58
0
0
41
0.98
1073291--1073579
150
1.9
150
90
0
461
37
11
14
36
1.82
1073855--1073879
11
2.3
11
100
0
50
24
0
0
76
0.80
1078298--1078327
3
10.0
3
100
0
60
66
0
0
33
0.92
1079437--1079476
3
13.3
3
100
0
80
32
0
0
67
0.91
1079620--1079659
16
2.6
15
88
7
62
40
0
5
55
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1081770--1081821
24
2.1
25
85
3
70
51
0
7
40
1.30
1081802--1081843
16
2.8
16
79
20
54
50
0
4
45
1.23
1086121--1086175
23
2.5
23
80
13
64
40
0
0
60
0.97
1086280--1086320
11
3.6
12
87
6
50
46
9
0
43
1.36
1086619--1086659
21
2.0
21
85
4
57
53
2
0
43
1.13
1089853--1089896
2
23.0
2
81
9
56
47
0
4
47
1.22
1090314--1090384
27
2.7
26
81
18
76
59
0
0
40
0.98
1093957--1094028
28
2.5
27
80
17
74
54
0
0
45
0.99
1098736--1098922
21
8.9
21
68
14
89
52
8
1
37
1.42
1098728--1098902
84
2.1
84
80
6
194
52
6
2
38
1.41
1099015--1099082
21
3.3
21
79
6
86
55
11
1
30
1.45
1098883--1099190
159
1.9
159
95
0
553
52
9
5
33
1.56
1099015--1099090
21
3.7
21
78
5
84
56
11
1
30
1.43
1098885--1099171
41
7.1
41
68
17
152
52
9
5
32
1.57
1099031--1099171
21
6.8
19
70
11
50
51
9
4
34
1.55
1099191--1099237
20
2.3
21
85
7
69
46
8
8
36
1.65
1099289--1099327
11
3.7
10
89
3
51
33
0
2
64
1.08
1099459--1099559
21
4.8
21
78
4
105
51
7
5
34
1.55
1099455--1099602
43
3.5
42
79
4
163
52
6
4
35
1.49
1099924--1099977
21
2.6
21
81
0
72
50
14
1
33
1.54
1103478--1103512
2
17.5
2
93
0
61
45
0
2
51
1.16
1110234--1110285
16
3.2
16
80
19
63
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1110863--1110919
26
2.0
26
83
12
69
42
3
1
52
1.28
1111296--1111346
28
1.9
27
88
11
79
60
0
0
39
0.97
1111308--1111341
17
2.1
17
88
5
52
61
0
0
38
0.96
1112650--1112696
15
3.1
15
78
9
51
59
0
0
40
0.97
1112903--1112929
3
9.0
3
100
0
54
66
0
0
33
0.92
1114181--1114235
20
2.7
20
77
8
58
43
1
0
54
1.10
1121308--1121431
6
20.0
6
65
20
51
62
1
0
35
1.11
1121339--1121387
13
3.8
13
76
12
57
57
2
2
38
1.22
1121315--1121432
57
2.1
56
80
12
125
61
1
0
36
1.12
1133174--1133205
16
2.1
16
94
5
57
34
0
0
65
0.93
1134735--1134820
33
2.6
33
86
0
118
18
60
9
11
1.57
1134798--1134827
12
2.5
12
94
0
51
16
73
10
0
1.09
1134924--1134976
15
3.5
15
78
0
52
28
56
1
13
1.47
1137167--1137239
22
3.3
21
77
14
67
41
1
1
56
1.16
1137186--1137242
20
3.0
19
74
20
57
47
0
0
52
1.00
1138407--1138448
13
3.2
13
89
0
57
73
0
0
26
0.83
1138440--1138483
19
2.3
19
84
11
54
47
2
0
50
1.13
1148820--1148878
24
2.5
24
77
0
64
45
3
6
44
1.47
1150106--1150152
16
2.9
15
84
9
58
48
0
2
48
1.13
1153635--1153679
2
22.5
2
95
0
81
48
48
2
0
1.13
1153679--1153708
2
15.0
2
100
0
60
50
0
0
50
1.00
1154953--1155005
26
2.0
26
89
7
81
49
7
7
35
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1160199--1160313
54
2.1
54
87
6
160
48
11
6
33
1.64
1160783--1160837
26
2.1
27
77
16
62
30
0
0
69
0.89
1160963--1161021
18
3.6
18
71
19
56
64
0
0
35
0.94
1160963--1161010
16
3.0
15
78
21
53
62
0
0
37
0.95
1163395--1163444
16
3.4
16
69
25
56
26
0
6
68
1.13
1163396--1163452
27
2.1
27
100
0
114
29
0
7
63
1.21
1166807--1167257
222
2.0
224
93
1
782
45
7
7
39
1.60
1169321--1169347
3
9.0
3
100
0
54
33
0
0
66
0.92
1171800--1171957
82
1.9
85
86
3
232
42
10
8
38
1.70
1174454--1175028
155
3.8
150
77
8
473
41
19
15
23
1.89
1175968--1175994
2
13.5
2
100
0
54
48
0
0
51
1.00
1176469--1176524
14
4.3
13
78
13
53
5
12
1
80
0.96
1176462--1176524
12
5.2
11
80
16
63
4
12
1
80
0.93
1176821--1177122
168
1.8
165
85
3
426
51
7
11
29
1.65
1180347--1180382
18
1.9
19
88
5
56
61
0
0
38
0.96
1183443--1183480
12
3.0
13
84
7
51
50
0
0
50
1.00
1183494--1183547
28
2.0
28
82
10
67
31
1
5
61
1.30
1183868--1183895
6
4.7
6
100
0
56
17
14
0
67
1.22
1186817--1186850
18
1.9
18
88
5
52
35
2
8
52
1.47
1194309--1194416
50
2.1
51
77
6
112
48
0
1
49
1.18
1194673--1194722
17
2.9
16
82
8
55
26
0
2
72
0.96
1194676--1194734
18
3.2
18
72
18
50
23
0
3
72
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1196221--1196280
27
2.1
29
84
6
79
45
0
0
55
0.99
1196660--1196698
3
13.0
3
88
0
60
64
2
2
30
1.21
1197573--1197600
14
2.0
14
100
0
56
50
0
21
28
1.49
1198484--1198587
50
2.0
52
96
3
194
25
22
12
39
1.89
1199599--1199630
3
10.7
3
100
0
64
65
0
0
34
0.93
1200221--1200266
16
3.0
15
76
23
51
54
0
0
45
0.99
1200223--1200269
15
3.1
15
76
11
51
53
0
0
46
1.00
1200697--1200736
3
13.3
3
100
0
80
32
0
0
67
0.91
1201006--1201047
3
14.0
3
94
0
75
69
0
0
30
0.89
1205387--1205478
42
2.3
41
81
5
98
36
2
4
56
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18