genome.fa.s117.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold117
Parameters: 2 7 7 80 10 50 1000
Length:  3231771

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643402--643430	2	15.0	2	92	7	51	51	0	0	48	1.00
646257--646355	17	6.4	17	70	17	65	38	14	7	40	1.73
646235--646427	58	3.2	58	77	5	170	39	14	6	39	1.73
646394--646444	17	3.0	17	88	0	84	39	21	5	33	1.78
646917--646954	2	19.0	2	100	0	76	50	0	0	50	1.00
649977--650002	2	13.0	2	100	0	52	0	50	0	50	1.00
653346--653375	6	5.0	6	100	0	60	16	50	16	16	1.79
654520--654565	21	2.2	21	84	7	58	43	0	4	52	1.21
654477--654587	45	2.5	44	75	13	111	42	0	2	54	1.14
654556--654588	16	2.0	17	88	5	50	39	0	0	60	0.97
659385--659419	18	1.9	18	88	11	54	2	8	5	82	0.91
659379--659441	27	2.3	27	81	5	74	1	17	4	76	1.04
661238--661288	26	2.0	26	84	7	68	54	11	11	21	1.68
662221--662247	2	13.5	2	100	0	54	51	0	0	48	1.00
667380--667408	6	4.8	6	100	0	58	17	51	13	17	1.76
670087--670111	13	1.9	13	100	0	50	32	16	16	36	1.90
670161--670251	20	4.6	20	73	17	75	36	12	18	32	1.88
672710--672735	13	2.0	13	100	0	52	30	15	15	38	1.88
675796--675822	13	2.1	13	100	0	54	29	14	14	40	1.86
675873--675939	33	2.0	33	86	11	93	35	11	19	32	1.88
678432--678465	15	2.3	15	89	0	50	29	32	0	38	1.58
680079--680103	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680133--680188	19	2.8	20	81	2	69	41	16	10	32	1.82
680327--680378	21	2.4	22	87	9	72	48	13	3	34	1.61
680897--680925	5	5.8	5	100	0	58	0	17	0	82	0.66
686845--686884	15	2.7	15	80	0	53	35	0	2	62	1.09
688725--688782	21	2.8	21	77	15	57	44	1	0	53	1.10
690224--690270	24	1.9	24	86	4	67	55	0	6	38	1.26
690462--690532	19	3.6	19	82	14	90	45	0	15	39	1.46
690462--690543	19	4.2	19	71	17	51	43	1	14	40	1.53
692025--692060	17	2.1	17	100	0	72	41	0	16	41	1.48
692726--692780	22	2.5	22	79	8	58	60	0	0	40	0.97
692737--692780	23	1.9	23	86	9	63	54	0	0	45	0.99
695823--695855	11	2.8	12	90	4	50	66	0	0	33	0.92
696020--696044	11	2.3	11	100	0	50	64	8	0	28	1.22
696244--696316	31	2.3	31	88	4	101	60	1	0	38	1.06
696744--696795	24	2.2	24	86	6	70	61	1	0	36	1.07
696768--697402	51	12.5	51	78	11	601	52	5	1	41	1.31
696814--696883	23	3.0	23	69	8	70	48	2	0	48	1.16
696823--697009	47	3.9	47	77	16	136	52	4	1	42	1.28
696768--697402	106	6.2	105	80	12	509	52	5	1	41	1.31
697258--697489	42	5.2	42	77	12	173	51	5	2	40	1.37
697357--697489	41	3.2	41	82	6	169	50	4	3	42	1.38
698108--698140	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698546--698804	50	5.2	50	91	4	416	30	19	21	28	1.98
698546--698804	100	2.6	100	96	1	475	30	19	21	28	1.98
703202--703460	50	5.2	50	92	4	425	30	19	21	28	1.98
703202--703460	100	2.6	100	97	1	484	30	19	21	28	1.98
705975--706081	54	2.0	54	100	0	214	42	24	22	11	1.86
709716--709762	19	2.3	20	82	7	60	63	0	2	34	1.06
709731--709778	25	1.9	25	83	8	62	56	0	2	41	1.11
709956--709987	16	1.9	17	93	6	57	43	6	0	50	1.27
710102--710154	24	2.3	22	75	15	54	60	0	0	39	0.97
710559--710618	14	4.0	14	71	21	50	56	0	0	43	0.99
710552--710624	24	3.1	24	77	16	66	54	0	0	45	0.99
713357--713568	101	2.1	103	91	3	349	40	2	9	47	1.51
714801--715003	102	2.0	103	87	7	297	39	20	12	27	1.89
721407--721467	22	2.7	23	80	7	63	52	0	0	47	1.00
722142--722168	14	1.9	14	100	0	54	81	0	0	18	0.69
723017--723066	2	25.0	2	100	0	100	50	0	0	50	1.00
725240--725278	20	2.0	20	85	5	53	51	0	0	48	1.00
725799--725838	3	13.3	3	89	0	62	72	0	0	27	0.85
725799--725839	12	3.4	12	93	0	73	73	0	0	26	0.84
726064--726100	18	2.0	18	89	5	56	45	0	0	54	1.00
726057--726107	21	2.5	20	77	6	57	49	1	0	49	1.12
726178--726220	17	2.4	18	77	14	54	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726184--726217	17	2.1	17	94	5	61	50	0	0	50	1.00
727856--727921	21	3.0	21	78	10	53	39	0	1	59	1.07
727875--727921	24	2.0	24	87	8	69	38	0	0	61	0.96
728974--729008	18	2.0	17	88	5	52	54	0	11	34	1.37
730798--730834	17	2.2	17	95	0	65	51	5	13	29	1.63
731498--731530	13	2.5	13	86	13	50	27	0	0	72	0.85
731498--731545	14	3.4	14	82	5	53	33	0	2	64	1.05
732010--732102	30	3.2	30	75	13	95	36	0	2	61	1.08
732057--732114	29	2.0	30	82	3	73	44	1	0	53	1.10
732119--732196	29	2.7	28	70	7	66	58	1	0	39	1.06
732113--732155	21	2.0	21	86	4	59	58	4	0	37	1.19
732118--732193	28	2.7	28	76	6	73	57	1	0	40	1.07
733618--733677	16	3.7	16	84	6	68	55	5	0	40	1.22
734681--734738	29	2.0	28	83	9	73	50	3	0	46	1.18
735014--735060	23	2.0	23	84	8	60	23	0	6	70	1.10
735575--735633	21	2.9	20	76	18	68	42	0	3	54	1.17
735948--735992	22	2.0	23	86	4	65	46	2	0	51	1.13
741927--742040	51	2.2	51	87	4	158	20	18	14	47	1.82
742063--742147	23	3.5	23	75	20	91	30	18	4	45	1.70
742057--742155	51	1.9	51	95	0	180	29	19	5	46	1.71
742497--742583	33	2.6	33	84	10	115	48	16	19	16	1.82
742822--743009	65	2.9	65	90	2	290	54	12	28	5	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752325--752570	58	4.3	58	78	7	198	47	15	8	28	1.73
754629--754725	13	6.0	16	74	25	89	35	12	16	36	1.86
754627--754729	32	3.3	32	95	2	183	35	12	16	34	1.87
754746--754787	21	2.0	21	100	0	84	42	9	19	28	1.82
754774--754799	13	2.0	13	100	0	52	30	15	15	38	1.88
757111--757392	52	5.4	52	88	2	383	28	26	11	33	1.91
757371--757656	78	3.6	79	84	6	343	26	25	15	31	1.96
757325--757656	158	2.1	158	83	6	404	27	25	14	32	1.95
757325--757656	80	4.2	78	82	6	355	27	25	14	32	1.95
757614--757687	27	2.7	27	97	2	139	28	28	16	27	1.97
763853--764536	61	11.3	60	81	7	760	25	27	19	27	1.99
764546--765030	55	8.5	55	79	10	465	27	27	20	24	1.99
764555--765037	110	4.2	111	81	8	517	27	27	20	24	1.99
765013--765232	42	5.1	43	78	12	213	19	27	13	39	1.89
765979--766033	21	2.7	21	80	5	69	34	12	14	38	1.84
766022--766046	13	1.9	13	100	0	50	36	16	16	32	1.90
766003--766067	17	4.0	16	77	20	64	36	12	15	35	1.85
766086--766129	21	2.1	21	100	0	88	40	9	18	31	1.81
766094--766209	13	10.2	12	68	20	88	37	12	17	32	1.86
766095--766209	34	3.4	34	100	0	230	37	12	17	33	1.87
768577--768858	52	5.4	52	87	2	374	28	26	12	33	1.92
768838--768912	27	2.7	27	87	6	107	25	33	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768865--769181	79	4.0	79	83	5	381	26	27	15	31	1.96
768865--769181	159	2.0	158	83	8	403	26	27	15	31	1.96
774111--774150	16	2.5	16	88	8	55	20	10	20	50	1.76
775077--775110	2	17.0	2	93	0	59	47	0	0	52	1.00
783140--783220	22	3.7	22	70	9	67	66	0	2	30	1.05
783140--783213	23	3.2	23	82	5	69	66	0	2	31	1.06
783983--784181	111	1.8	109	84	4	274	41	11	8	38	1.71
784670--784700	16	1.9	16	93	0	53	22	3	25	48	1.66
785030--785074	24	1.9	23	81	4	54	55	2	2	40	1.24
789636--789660	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18