genome.fa.s144.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold144
Parameters: 2 7 7 80 10 50 1000
Length:  3311329

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  13  of  21  ( 2468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834799--1834841	21	2.2	19	84	16	52	20	16	4	58	1.56
1838205--1838271	22	2.9	23	72	20	59	34	2	5	56	1.39
1838222--1838272	22	2.4	22	90	3	77	33	1	5	58	1.33
1838936--1838999	31	2.2	29	81	15	71	21	3	9	65	1.35
1844987--1845032	19	2.4	19	81	3	56	50	2	0	47	1.13
1849804--1849856	21	2.3	24	75	21	60	43	0	1	54	1.11
1855242--1855276	2	17.5	2	100	0	70	0	0	48	51	1.00
1859499--1859528	9	3.4	9	95	4	53	70	0	0	30	0.88
1861442--1861480	18	2.2	18	100	0	78	56	0	5	38	1.22
1864527--1864556	2	15.0	2	100	0	60	50	0	0	50	1.00
1867067--1867115	20	2.6	19	81	15	57	46	0	0	53	1.00
1867662--1867705	19	2.3	19	76	7	54	40	0	0	59	0.98
1867734--1867780	17	2.7	17	80	9	51	36	0	4	59	1.17
1867992--1868029	19	2.0	20	84	5	51	50	0	0	50	1.00
1867968--1868077	18	6.4	17	70	21	61	41	0	0	57	1.05
1868009--1868098	33	2.8	32	78	13	103	43	1	0	55	1.07
1871579--1871604	1	26.0	1	100	0	52	100	0	0	0	0.00
1874477--1874505	2	14.5	2	100	0	58	51	0	0	48	1.00
1874868--1874922	15	3.6	15	73	20	51	40	3	0	56	1.17
1876765--1876801	14	2.5	15	91	8	58	48	2	0	48	1.15
1877680--1877714	2	17.5	2	100	0	70	51	0	0	48	1.00
1883452--1883520	32	2.2	32	81	5	77	34	1	0	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883452--1883512	19	3.2	20	76	19	58	36	1	0	62	1.05
1883483--1883564	24	3.4	23	76	15	78	25	1	2	70	1.06
1885285--1885325	21	1.9	22	90	5	66	19	0	7	73	1.07
1886126--1886176	15	3.3	15	78	15	50	43	0	0	56	0.99
1886873--1886905	17	1.9	18	88	11	52	39	0	0	60	0.97
1886987--1887040	23	2.2	25	87	6	76	40	1	0	57	1.09
1886987--1887040	8	6.8	8	79	8	56	40	1	0	57	1.09
1886987--1887045	15	3.7	17	77	8	63	40	3	0	55	1.16
1887106--1887149	23	1.9	23	81	9	54	65	0	2	31	1.05
1890449--1890597	8	18.8	8	73	15	69	70	2	1	26	1.06
1890449--1890589	11	12.9	11	73	13	53	70	1	1	26	1.03
1890494--1890524	4	7.8	4	92	0	53	48	0	3	48	1.17
1890522--1890573	23	2.3	22	83	9	68	78	1	0	19	0.84
1890850--1890886	15	2.6	14	91	8	58	18	21	13	45	1.84
1890891--1890976	33	2.6	33	94	0	154	38	23	18	19	1.93
1891749--1891832	23	3.7	23	84	6	84	60	21	11	5	1.52
1892737--1893177	184	2.4	184	83	4	532	30	12	14	42	1.83
1897012--1897129	61	1.9	61	92	0	200	27	22	5	44	1.76
1900430--1900504	20	3.7	20	81	10	89	33	17	12	37	1.86
1915583--1915612	15	2.0	15	93	0	51	46	10	10	33	1.71
1915684--1915866	32	5.8	32	85	5	212	32	27	17	22	1.96
1915688--1915864	96	1.8	96	87	2	266	31	27	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915870--1915961	43	2.1	43	87	2	130	27	22	15	34	1.94
1915916--1916154	49	4.8	49	81	5	228	26	22	15	35	1.93
1915916--1916315	52	7.8	50	75	7	234	26	22	14	35	1.93
1917124--1917194	20	3.5	20	77	11	81	33	15	14	36	1.87
1917112--1917194	41	2.0	41	90	0	130	32	16	14	36	1.89
1920564--1920754	44	4.3	44	72	7	181	23	22	13	40	1.90
1920595--1920755	88	1.8	88	84	5	218	23	22	14	39	1.91
1920927--1921607	42	16.2	42	71	10	340	18	27	18	35	1.94
1920910--1921616	84	8.4	84	79	3	654	18	27	18	35	1.94
1920910--1922194	168	7.8	169	74	8	815	17	27	18	35	1.94
1921646--1922203	42	13.3	42	72	4	374	17	28	18	35	1.94
1921615--1922185	84	6.8	84	81	5	559	16	28	19	36	1.93
1921475--1921757	150	1.9	151	82	4	365	17	27	19	35	1.94
1921379--1921841	234	2.0	234	81	5	549	16	28	19	35	1.94
1921652--1922203	126	4.4	126	74	6	438	17	28	19	35	1.94
1921328--1921925	318	1.9	318	82	2	763	17	28	18	35	1.94
1922726--1922766	10	4.0	10	84	15	57	78	0	2	19	0.87
1922798--1922847	14	3.5	14	77	17	50	74	0	0	26	0.83
1922793--1922844	26	2.0	27	88	3	79	71	0	0	28	0.87
1922729--1922854	8	16.8	8	74	15	56	67	0	2	29	1.09
1923085--1923121	15	2.6	14	91	8	58	18	21	13	45	1.84
1923261--1923337	31	2.5	31	83	6	95	50	12	16	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1923933--1924017	23	3.7	23	79	4	66	60	20	12	7	1.56
1929869--1929912	23	1.9	23	81	9	54	31	4	0	63	1.14
1932708--1932799	40	2.3	40	80	0	103	21	15	13	50	1.78
1932745--1932839	39	2.4	39	80	7	102	18	13	15	51	1.76
1932745--1932916	79	2.2	78	81	5	186	19	18	15	47	1.83
1932770--1932916	40	3.8	40	73	11	108	20	19	14	45	1.85
1932807--1932920	40	2.9	39	77	5	122	20	22	14	42	1.87
1933132--1933313	64	2.8	63	79	12	181	23	25	13	38	1.91
1933021--1933313	66	4.5	64	75	7	196	23	23	13	39	1.90
1933336--1933569	129	1.8	128	81	5	292	23	19	14	43	1.87
1933544--1933665	64	1.9	64	89	0	190	22	18	13	45	1.84
1936479--1936503	10	2.5	10	100	0	50	36	0	12	52	1.39
1937399--1937669	145	1.9	148	82	3	352	27	13	16	42	1.86
1938006--1938083	38	2.1	37	92	2	129	41	3	25	29	1.73
1938301--1938326	13	2.0	13	100	0	52	23	23	7	46	1.78
1939475--1939547	34	2.1	34	84	0	92	50	13	4	31	1.60
1939623--1939661	18	2.2	18	95	0	69	46	12	0	41	1.42
1941728--1941786	33	1.9	33	86	13	90	50	1	0	47	1.11
1943307--1943352	23	2.0	23	95	4	85	47	4	4	43	1.42
1950934--1951029	40	2.4	39	87	5	131	32	14	11	41	1.82
1950934--1951031	20	4.9	20	82	8	105	32	14	11	41	1.81
1953223--1953559	97	3.5	96	94	0	568	25	31	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955415--1955456	19	2.2	19	86	0	57	14	11	7	66	1.43
1965123--1965175	5	11.0	5	88	8	83	83	16	0	0	0.66
1965122--1965175	19	2.8	20	88	5	85	83	16	0	0	0.65
1965122--1965184	10	6.4	10	88	3	74	82	15	1	0	0.74
1965122--1965184	19	3.3	19	81	14	76	82	15	1	0	0.74
1966419--1966951	28	18.5	28	87	3	661	28	30	17	22	1.97
1966419--1966951	57	9.2	57	86	6	664	28	30	17	22	1.97
1966419--1966951	86	6.2	84	89	4	670	28	30	17	22	1.97
1967533--1967607	20	3.8	20	81	0	96	33	12	13	41	1.81
1969802--1970147	97	3.6	97	91	0	566	26	30	14	28	1.95
1977302--1977341	21	1.9	21	85	10	55	30	0	0	70	0.88
1978153--1978188	16	2.2	16	90	0	54	50	19	8	22	1.74
1979729--1979803	32	2.3	32	84	6	89	40	2	6	50	1.43
1979751--1979813	32	2.0	32	83	0	81	39	3	4	52	1.38
1980598--1980639	2	21.0	2	95	0	75	47	0	2	50	1.14
1990434--1990524	45	2.0	45	97	0	173	32	9	17	39	1.83
1996077--1996163	42	2.1	40	81	14	97	55	0	0	44	0.99
1996764--1996802	2	19.5	2	100	0	78	48	0	0	51	1.00
1996778--1996935	80	2.0	80	97	0	298	44	8	12	34	1.74
1999843--1999916	38	1.9	38	94	0	130	35	21	14	28	1.93
2004800--2004829	15	2.0	15	93	0	51	6	43	0	50	1.28
2012408--2012440	15	2.2	15	100	0	66	6	39	0	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2015511--2015558	22	2.2	22	85	3	62	62	0	2	35	1.07
2016447--2016504	15	3.8	16	73	13	59	62	0	0	37	0.96
2016446--2016493	22	2.2	21	85	3	60	62	0	0	37	0.95
2016447--2016503	30	2.0	28	86	13	80	61	0	0	38	0.96
2016446--2016512	25	2.6	26	75	15	57	61	1	0	37	1.05
2016448--2016513	19	3.5	19	79	16	59	60	1	0	37	1.06
2016727--2016777	17	2.7	19	82	14	70	60	0	0	39	0.97
2016727--2016840	20	6.1	18	76	11	68	52	2	0	44	1.14
2016751--2016826	24	3.3	23	80	12	84	52	2	0	44	1.14
2017226--2017264	15	2.8	14	88	7	53	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21