genome.fa.s144.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold144
Parameters: 2 7 7 80 10 50 1000
Length:  3311329

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3229744--3229841	34	2.8	35	95	1	171	61	2	5	31	1.29
3229752--3229843	17	5.4	17	68	12	71	60	2	5	31	1.31
3230043--3230125	32	2.6	32	98	0	157	22	25	22	28	1.99
3233270--3233471	100	2.0	100	93	0	341	36	22	13	27	1.91
3235912--3235962	22	2.3	23	86	3	68	35	5	15	43	1.71
3236345--3236436	44	2.1	44	95	0	166	39	17	16	27	1.91
3240682--3240732	22	2.3	23	86	3	77	37	11	13	37	1.82
3243652--3243689	3	12.7	3	100	0	76	34	0	0	65	0.93
3250250--3250316	33	2.0	33	97	0	125	35	38	4	20	1.73
3251873--3251902	2	15.0	2	100	0	60	50	0	0	50	1.00
3253971--3254001	3	10.3	3	92	0	53	29	0	3	67	1.06
3256682--3256725	19	2.2	21	88	8	65	50	0	2	47	1.13
3257040--3257079	12	3.3	12	86	6	55	90	0	10	0	0.47
3257042--3257079	16	2.3	16	90	4	58	89	0	10	0	0.49
3257609--3257656	23	2.1	23	84	0	60	45	4	2	47	1.33
3257620--3257664	23	2.0	23	90	0	72	44	2	0	53	1.13
3259832--3259892	21	2.8	21	80	14	61	47	1	0	50	1.10
3259839--3259892	22	2.4	22	81	9	65	46	1	0	51	1.11
3260975--3261004	15	1.9	16	93	6	53	33	0	10	56	1.32
3260970--3261006	16	2.3	17	81	13	51	29	0	10	59	1.31
3261273--3261297	2	12.5	2	100	0	50	48	0	0	52	1.00
3262949--3263013	24	2.7	26	80	17	70	38	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3262981--3263037	29	1.9	30	85	3	80	35	0	0	64	0.93
3262998--3263037	15	2.8	14	92	7	71	30	0	0	70	0.88
3264978--3265022	21	2.2	21	84	4	56	28	2	2	66	1.15
3265812--3265845	16	2.1	16	88	0	50	14	14	26	44	1.84
3267804--3267890	43	2.0	43	100	0	174	41	6	25	26	1.80
3268528--3268579	23	2.2	23	82	6	59	50	0	1	48	1.12
3269063--3269126	22	3.0	22	74	2	58	42	0	3	54	1.16
3269108--3269222	38	3.0	38	75	19	112	42	0	0	57	0.98
3269132--3269195	21	3.2	20	77	14	71	39	0	0	60	0.97
3269063--3269222	77	2.1	78	80	8	175	42	0	1	56	1.07
3269152--3269223	25	2.9	25	81	4	83	41	0	0	58	0.98
3273312--3273366	13	4.2	13	81	6	67	38	0	0	61	0.96
3273314--3273366	25	2.1	26	85	3	72	37	0	0	62	0.96
3274118--3274197	10	7.6	11	73	9	69	67	0	1	31	0.99
3274205--3274256	24	2.1	25	86	13	72	55	0	5	38	1.24
3274280--3274354	23	3.5	22	75	15	68	54	0	1	44	1.08
3275973--3276041	32	2.2	31	81	2	75	33	5	14	46	1.68
3276073--3276137	16	4.1	16	78	4	69	41	10	15	32	1.81
3276073--3276137	32	2.0	32	84	0	85	41	10	15	32	1.81
3277259--3277297	20	1.9	21	84	5	53	56	5	5	33	1.43
3286704--3286737	9	3.7	9	92	4	50	35	0	0	64	0.94
3286706--3286743	10	3.9	10	82	6	51	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3289527--3289594	25	2.8	23	77	16	73	1	20	0	77	0.84
3291561--3291662	49	2.0	49	82	14	120	48	0	0	50	1.07
3292889--3292922	11	3.1	11	88	12	52	67	0	2	29	1.05
3293192--3293254	22	3.1	19	79	18	58	68	3	0	28	1.05
3293204--3293259	24	2.4	22	85	8	67	71	0	0	28	0.86
3293219--3293254	18	2.1	18	94	5	65	72	0	0	27	0.85
3293591--3293660	12	5.8	12	75	13	63	40	0	0	60	0.97
3293596--3293632	20	1.9	20	88	5	58	43	0	0	56	0.99
3293598--3293651	27	2.1	25	86	10	74	40	0	0	59	0.98
3294109--3294172	20	3.2	21	78	8	73	37	0	0	62	0.95
3294344--3294385	19	2.2	20	83	12	52	35	0	7	57	1.26
3295732--3295760	5	5.8	5	100	0	58	82	0	0	17	0.66
3296055--3296088	12	2.8	12	86	4	50	67	2	0	29	1.05
3297045--3297092	23	2.0	24	84	11	64	52	0	0	47	1.00
3297993--3298035	21	2.0	21	86	0	59	53	4	4	37	1.43
3299508--3299554	22	2.1	22	100	0	94	31	25	27	14	1.95
3301746--3301813	27	2.5	27	88	4	93	50	19	5	25	1.70
3304515--3304545	13	2.4	13	94	0	53	51	19	19	9	1.74
3305533--3305573	2	20.5	2	89	0	64	51	4	0	43	1.23
3305537--3305573	16	2.3	16	100	0	74	51	5	0	43	1.24
3305945--3305990	13	3.2	14	84	9	58	2	21	0	76	0.90
3305947--3305996	17	2.9	17	76	5	57	2	22	0	76	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3307236--3307773	32	16.8	32	94	0	900	16	18	34	30	1.93
3307756--3308395	27	24.0	27	85	7	846	29	14	33	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!