genome.fa.s144.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold144
Parameters: 2 7 7 80 10 50 1000
Length:  3311329

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828166--828234	13	5.4	13	74	10	70	69	0	0	30	0.89
828171--828233	19	3.3	19	84	15	85	69	0	0	30	0.88
828212--828275	33	2.0	33	84	9	87	54	0	0	45	0.99
828230--828275	16	2.8	16	81	12	58	50	0	0	50	1.00
828888--829016	8	16.0	8	67	18	63	41	0	0	58	0.98
828900--829017	37	3.4	33	79	12	112	41	0	0	58	0.98
828891--829068	38	4.6	37	72	21	125	37	0	0	61	1.05
828887--829021	32	4.0	32	77	15	112	41	0	0	58	0.98
828892--829009	17	6.6	19	69	23	71	42	0	0	57	0.98
829002--829068	30	2.2	30	84	10	84	29	1	1	67	1.09
829027--829068	22	2.0	21	85	4	57	28	0	0	71	0.86
829607--829654	24	1.9	24	87	8	69	39	6	6	47	1.54
831781--831989	50	4.2	50	95	1	357	28	21	19	30	1.98
836385--836593	50	4.2	50	95	1	357	28	21	19	30	1.98
839703--839733	2	15.5	2	100	0	62	48	0	0	51	1.00
840244--840301	28	2.1	28	96	0	107	39	22	17	20	1.92
843055--843090	2	18.0	2	100	0	72	50	0	50	0	1.00
850275--850336	30	2.1	30	81	6	72	43	0	0	56	0.99
855234--855270	17	2.2	17	90	4	58	59	0	0	40	0.97
855608--855659	23	2.3	23	79	0	59	40	0	5	53	1.25
855619--855679	31	2.0	31	81	12	72	47	0	4	47	1.23
855809--855853	18	2.5	18	89	7	65	64	0	2	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855809--855859	17	2.9	17	85	8	68	64	0	1	33	1.05
855900--855932	16	2.0	17	88	5	50	39	0	3	57	1.14
859967--860021	16	3.1	17	82	14	67	60	0	0	40	0.97
859979--860022	20	2.3	19	88	4	61	63	0	0	36	0.95
860810--860836	2	13.5	2	100	0	54	51	0	0	48	1.00
861711--861813	36	2.8	37	78	10	106	61	1	0	35	1.14
861764--861807	24	1.9	24	90	9	74	65	0	2	31	1.05
861814--861856	6	7.2	6	84	10	61	0	16	0	83	0.64
861822--861853	11	2.9	11	100	0	64	0	15	0	84	0.63
863843--863900	11	5.0	12	72	19	52	63	3	1	31	1.21
863859--863904	17	2.8	17	77	6	51	67	2	2	28	1.14
872190--872241	26	1.9	28	84	7	72	57	0	3	38	1.17
872293--872355	21	3.1	21	78	10	60	25	4	1	68	1.18
873033--873084	18	3.1	16	81	13	59	55	0	0	44	0.99
873039--873086	16	2.9	16	82	11	53	52	0	0	47	1.00
873039--873086	17	2.9	16	79	14	53	52	0	0	47	1.00
873039--873105	34	1.9	35	82	8	84	58	0	0	41	0.98
876406--876437	3	10.7	3	100	0	64	68	0	0	31	0.90
876814--876869	15	3.8	14	84	15	69	53	0	1	44	1.11
876811--876879	29	2.4	28	86	11	88	52	0	1	46	1.09
876786--876884	15	7.1	14	72	20	57	47	1	1	50	1.14
877264--877288	6	4.2	6	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877295--877343	15	3.1	16	79	8	55	30	4	2	63	1.24
878035--878069	16	2.2	17	90	10	56	40	0	0	60	0.97
885174--885273	44	2.3	44	100	0	200	32	9	28	31	1.88
887665--887700	18	2.1	17	94	5	63	50	0	0	50	1.00
887758--887829	18	4.4	17	73	19	55	41	1	0	56	1.07
887894--887938	21	2.2	21	84	4	56	57	0	2	40	1.11
888025--888080	27	2.0	30	86	10	82	39	0	3	57	1.16
888040--888106	34	2.0	33	82	8	82	38	2	0	58	1.14
888040--888107	38	1.9	33	82	14	82	39	2	0	57	1.14
889878--889909	2	16.0	2	100	0	64	50	0	0	50	1.00
891867--891926	12	5.4	12	73	16	58	66	0	0	33	0.92
891879--891927	20	2.4	21	80	16	66	69	0	0	30	0.89
893863--893907	7	6.9	7	80	12	51	15	6	0	77	0.96
893862--893910	19	2.5	20	86	3	73	16	6	0	77	0.96
893863--893926	26	2.5	26	82	5	76	15	4	1	78	1.00
895597--895643	14	3.4	14	80	8	51	65	0	2	31	1.04
895584--895643	28	2.0	30	84	9	79	60	0	1	38	1.07
896007--896038	16	2.0	16	93	0	55	50	3	0	46	1.17
904509--904545	3	12.3	3	100	0	74	32	0	0	67	0.91
905418--905448	15	2.0	16	93	6	55	25	0	0	74	0.82
905991--906027	19	1.9	19	88	0	56	43	5	0	51	1.24
909453--909486	16	2.1	16	88	0	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910810--910841	16	2.0	16	100	0	64	50	0	0	50	1.00
910815--910850	16	2.2	16	90	0	54	55	0	0	44	0.99
910987--911042	27	2.0	27	83	10	69	51	3	1	42	1.29
914138--914171	17	1.9	17	88	5	50	44	2	0	52	1.16
915256--915289	2	17.0	2	87	0	50	52	2	0	44	1.16
917209--917272	10	6.0	11	78	10	62	65	1	0	32	1.02
917326--917364	20	2.0	20	85	10	53	46	0	5	48	1.24
921587--921634	15	3.2	15	80	13	55	56	4	0	39	1.19
925078--925111	2	17.0	2	93	0	59	47	0	0	52	1.00
927473--927552	32	2.5	32	83	2	97	26	3	10	60	1.46
927500--927552	16	3.3	15	87	10	70	30	1	7	60	1.35
928036--928063	2	14.0	2	100	0	56	0	50	0	50	1.00
929018--929078	32	1.9	32	89	0	95	24	0	22	52	1.47
929011--929074	28	2.3	28	80	0	74	23	0	21	54	1.45
931764--931807	22	2.0	22	86	8	63	38	4	9	47	1.56
932456--932488	11	3.1	11	82	8	50	57	0	0	42	0.98
933769--933806	20	1.9	20	94	0	67	39	2	21	36	1.67
933865--933998	51	2.6	50	84	1	160	30	13	11	44	1.80
937931--937973	20	2.1	20	83	12	52	37	6	20	34	1.80
942149--942348	79	2.5	78	86	1	256	38	13	22	26	1.90
942141--942371	79	2.9	77	79	7	250	39	12	21	26	1.88
944827--944871	21	2.2	20	88	11	65	31	17	8	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945682--945728	2	23.5	2	100	0	94	48	0	0	51	1.00
947140--947204	28	2.3	29	91	2	105	30	0	7	61	1.24
947391--947438	24	2.0	24	88	8	71	77	0	4	18	0.93
947409--947435	10	2.7	10	100	0	54	85	0	0	14	0.61
947654--947778	59	2.0	64	87	7	188	24	12	10	52	1.69
948962--949003	2	21.0	2	100	0	84	0	50	0	50	1.00
954606--954636	2	15.5	2	100	0	62	51	0	0	48	1.00
962769--963282	262	2.0	259	94	1	904	37	16	8	37	1.79
965633--965740	21	5.1	21	75	4	85	15	5	33	45	1.70
965652--965740	42	2.1	42	83	4	108	17	4	31	46	1.69
967581--967622	21	2.0	21	90	0	66	21	26	16	35	1.94
973655--973711	27	2.1	27	86	0	78	40	26	1	31	1.66
975234--975273	20	2.0	20	90	0	62	35	15	5	45	1.68
978851--978880	2	15.0	2	92	0	51	53	0	46	0	1.00
988575--988604	2	15.0	2	100	0	60	0	50	0	50	1.00
988706--988741	2	18.5	2	94	5	65	52	0	0	47	1.00
989050--989107	25	2.2	27	75	12	66	55	0	5	39	1.22
989058--989120	25	2.5	25	86	0	81	57	1	3	38	1.24
989094--989149	16	3.5	16	70	18	53	51	1	0	46	1.11
989447--989495	25	2.0	25	84	8	64	51	2	0	46	1.12
989439--989504	29	2.2	30	81	10	82	48	1	4	45	1.32
989682--989741	21	3.0	20	79	13	63	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990307--990358	18	2.8	20	72	24	60	48	0	0	51	1.00
990311--990361	20	2.8	18	77	22	54	49	0	0	50	1.00
990383--990419	13	2.8	13	87	4	56	40	0	0	59	0.97
990491--990543	21	2.6	19	83	13	70	39	1	0	58	1.09
992645--992698	26	2.0	27	82	10	67	38	20	9	31	1.84
994214--994259	13	3.1	15	75	18	51	56	2	0	41	1.11
997528--997555	2	14.0	2	100	0	56	50	0	50	0	1.00
998776--998828	21	2.5	22	77	17	67	41	5	1	50	1.36
999781--999816	2	18.0	2	100	0	72	50	0	0	50	1.00
1006714--1006753	19	2.2	19	90	4	64	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21