genome.fa.s150.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold150
Parameters: 2 7 7 80 10 50 1000
Length:  1465027

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268834--268891	28	2.1	28	84	12	75	44	0	0	55	0.99
268834--268926	29	3.2	30	78	16	90	44	0	0	55	0.99
268899--268941	20	2.2	20	86	0	59	37	0	0	62	0.95
268877--268946	18	4.2	18	67	23	62	38	0	0	61	0.96
269679--269708	15	2.0	15	100	0	60	26	13	13	46	1.80
273851--273896	4	11.5	4	100	0	92	26	23	0	50	1.50
273894--273922	2	14.5	2	100	0	58	48	0	0	51	1.00
276325--276382	29	2.0	29	96	0	107	37	6	29	25	1.82
282026--282102	36	2.1	35	81	13	86	64	0	0	35	0.93
285745--285803	28	2.1	29	87	9	86	35	1	6	55	1.36
286124--286153	14	2.1	14	93	0	51	50	0	0	50	1.00
286248--286289	19	2.3	19	91	4	68	38	4	0	57	1.20
286543--286610	29	2.3	29	82	0	82	47	1	1	50	1.19
290007--290054	24	2.0	24	84	8	62	52	2	2	43	1.24
290364--290396	2	16.5	2	100	0	66	51	0	0	48	1.00
290508--290554	3	15.7	3	100	0	94	34	0	0	65	0.93
290947--291004	28	2.0	30	86	10	84	31	20	10	37	1.86
291679--291714	19	1.9	19	88	5	56	27	2	2	66	1.19
292676--292716	2	20.5	2	100	0	82	0	48	0	51	1.00
298065--298722	79	8.4	79	78	6	572	34	12	23	29	1.92
298171--298615	230	1.9	231	79	5	499	35	12	23	28	1.91
298134--298722	157	3.8	157	77	8	418	34	12	23	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299386--299411	10	2.6	10	100	0	52	69	7	0	23	1.14
301099--301157	24	2.7	21	78	16	66	44	8	16	30	1.78
301100--301149	24	2.1	24	92	0	82	42	6	18	34	1.74
302735--302790	28	2.0	28	83	10	71	44	1	3	50	1.29
303373--303449	20	3.8	20	77	0	91	29	12	11	45	1.78
303373--303450	40	2.0	39	84	2	102	29	12	12	44	1.80
305629--305868	97	2.5	96	88	2	354	30	28	12	28	1.93
308418--308532	29	4.0	29	83	2	124	43	6	17	33	1.74
309750--309839	42	2.1	42	97	0	171	45	8	14	31	1.75
311723--311758	18	1.9	19	94	5	65	38	0	0	61	0.96
313714--313773	17	3.5	17	77	18	63	56	0	0	43	0.99
315329--315361	16	2.1	16	88	11	50	78	0	0	21	0.75
318111--318148	2	19.0	2	94	0	67	50	0	2	47	1.15
320877--320903	2	13.5	2	100	0	54	48	0	0	51	1.00
321677--321705	13	2.2	13	100	0	58	6	55	0	37	1.27
323090--323143	15	3.5	15	75	12	56	31	9	7	51	1.61
323094--323152	31	1.9	30	86	3	82	30	10	10	49	1.70
323314--323347	16	2.1	16	88	0	50	44	2	5	47	1.42
323324--323356	16	2.1	16	94	0	57	42	0	3	54	1.15
332866--332914	2	24.5	2	87	0	71	53	0	2	44	1.12
337715--337777	17	3.8	17	70	18	51	46	0	0	53	1.00
337724--337802	32	2.4	33	81	10	81	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338744--338793	16	3.2	16	75	16	50	62	2	0	36	1.07
338747--338801	15	3.4	17	75	14	53	56	1	1	40	1.21
338881--338911	11	2.8	11	95	0	53	25	0	0	74	0.82
338959--338996	18	2.1	18	90	0	58	31	7	7	52	1.59
339421--339459	2	19.5	2	100	0	78	48	0	0	51	1.00
339671--339721	23	2.1	23	82	7	57	64	5	1	27	1.27
339756--339856	17	5.9	17	72	13	82	46	1	8	42	1.46
339756--339856	51	2.0	51	84	3	132	46	1	8	42	1.46
339755--339860	34	3.1	33	80	2	113	45	1	8	44	1.45
340400--340439	15	2.7	15	92	0	62	42	0	2	55	1.13
342829--343230	201	2.0	200	91	0	651	38	20	16	23	1.93
343653--343688	11	3.2	11	84	7	54	41	0	0	58	0.98
345129--345176	19	2.6	19	86	3	62	14	4	6	75	1.16
350183--350212	15	2.0	15	100	0	60	20	46	6	26	1.75
354757--354809	20	2.7	20	93	0	88	35	18	11	33	1.87
354798--354822	13	1.9	13	100	0	50	32	16	16	36	1.90
354996--355036	20	2.0	21	90	9	66	39	4	7	48	1.52
355112--355212	50	2.0	50	92	0	166	29	11	11	46	1.76
371931--372050	51	2.4	51	89	0	195	31	15	25	27	1.95
372033--372109	28	2.7	30	92	7	126	24	20	32	22	1.98
371898--372207	158	2.0	158	83	3	401	31	14	26	27	1.95
372093--372258	51	3.3	50	90	3	244	30	11	25	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372241--372309	28	2.5	28	88	4	95	30	17	30	21	1.96
371935--372318	208	1.8	209	85	5	535	32	14	25	28	1.94
372249--372317	28	2.5	28	86	9	88	31	21	24	21	1.98
374736--374789	20	2.7	20	91	0	81	40	12	16	29	1.86
374805--374834	13	2.3	13	100	0	60	40	13	16	30	1.87
376442--376552	30	3.7	30	78	13	97	35	8	3	53	1.48
376482--376643	15	10.7	15	69	10	89	31	12	3	52	1.55
376454--376623	30	5.7	30	83	3	200	34	11	2	51	1.54
376615--376716	30	3.4	29	73	9	82	27	10	9	51	1.68
376572--376667	45	2.1	45	80	0	102	30	10	6	53	1.60
379091--379116	13	2.0	13	100	0	52	30	15	15	38	1.88
379756--379799	21	2.1	21	83	8	54	25	31	4	38	1.76
379788--379839	25	2.1	25	96	0	95	50	9	3	36	1.54
383669--383699	15	2.1	15	93	0	53	12	22	16	48	1.80
387762--387787	13	2.0	13	100	0	52	30	15	15	38	1.88
388759--388801	17	2.6	17	81	3	52	41	34	20	2	1.65
388735--388795	16	3.8	16	71	4	59	39	36	18	6	1.76
389707--389749	19	2.3	19	88	4	61	67	0	2	30	1.03
390644--390684	16	2.6	15	85	11	55	36	9	2	51	1.48
397000--397144	49	2.9	50	89	4	220	44	8	17	28	1.79
397050--397134	20	3.8	20	72	24	80	44	9	15	30	1.78
398479--398532	20	2.7	20	88	5	74	38	18	11	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398560--398654	19	4.9	19	87	5	129	33	14	16	34	1.90
398582--398664	38	2.4	34	79	16	98	36	15	16	31	1.91
404485--404670	79	2.4	79	82	7	234	33	12	26	26	1.93
404523--404812	130	2.2	131	83	7	376	33	12	26	28	1.92
406420--406493	20	3.7	19	82	7	85	28	16	12	43	1.83
409710--409780	27	2.6	27	100	0	142	12	19	45	22	1.84
411995--412019	13	1.9	13	100	0	50	40	12	16	32	1.84
412066--412117	13	3.5	13	73	26	50	36	17	13	32	1.89
412074--412136	19	3.7	18	74	24	64	34	17	12	34	1.88
412066--412136	32	2.2	32	94	0	124	35	18	12	33	1.89
412528--412642	51	2.2	52	80	7	128	32	26	10	30	1.90
412625--412726	28	3.6	28	89	2	143	23	32	18	25	1.97
412681--412855	79	2.2	79	86	2	235	26	26	16	30	1.96
412791--412910	51	2.4	51	88	0	168	28	25	14	31	1.94
412673--413138	237	2.0	237	84	3	616	26	23	14	35	1.93
412918--413091	79	2.2	79	81	8	194	28	23	14	33	1.94
413029--413142	51	2.2	51	84	9	144	28	17	14	40	1.88
419297--419325	13	2.3	13	94	5	51	0	31	0	68	0.89
419291--419342	21	2.5	21	71	22	54	1	28	0	69	0.99
421703--421738	15	2.3	16	95	4	65	75	11	0	13	1.06
421857--421942	26	3.2	25	75	19	84	48	1	1	48	1.16
422936--422975	21	1.9	21	90	10	64	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428142--428182	22	2.0	22	85	9	59	48	0	2	48	1.14
429150--429206	16	3.8	15	77	11	55	35	8	1	54	1.42
437498--437617	52	2.3	52	95	0	213	28	17	19	35	1.94
437498--437637	52	2.7	52	86	4	185	29	17	20	33	1.95
437626--437650	13	1.9	13	100	0	50	36	16	16	32	1.90
437691--437757	33	2.0	33	88	0	98	40	13	11	34	1.81
437713--437737	13	1.9	13	100	0	50	32	16	16	36	1.90
437881--437922	21	2.0	21	100	0	84	33	9	38	19	1.84
440845--440901	21	2.7	21	86	2	69	33	17	1	47	1.58
444950--445023	20	3.8	20	81	12	91	39	12	16	32	1.85

Tables:   1   2   3   4   5   6   7   8   9