genome.fa.s150.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold150
Parameters: 2 7 7 80 10 50 1000
Length:  1465027

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444947--445023	40	2.0	38	90	10	120	38	12	15	32	1.86
445896--446543	115	5.6	117	87	5	801	23	18	29	28	1.97
445896--446543	28	22.5	28	81	7	701	23	18	29	28	1.97
447750--447826	1	77.0	1	76	0	55	2	1	10	85	0.75
447746--447827	17	4.7	17	79	13	87	2	1	12	84	0.79
447740--447823	26	3.6	23	79	16	84	2	1	13	83	0.81
461758--461814	20	2.8	20	91	0	96	42	12	15	29	1.84
462116--462154	20	2.0	19	90	5	60	35	20	10	33	1.86
462164--462188	13	1.9	13	100	0	50	32	16	16	36	1.90
462176--462228	20	2.6	21	82	8	65	37	15	16	30	1.90
462270--462333	33	2.0	32	87	3	92	43	18	10	26	1.83
468482--468507	13	2.0	13	100	0	52	30	15	15	38	1.88
468949--468993	20	2.1	22	88	8	67	17	48	28	4	1.66
470944--470982	20	2.0	19	95	5	69	35	17	10	35	1.84
470992--471016	13	1.9	13	100	0	50	32	16	16	36	1.90
471004--471056	20	2.6	21	82	8	65	37	15	16	30	1.90
471098--471161	33	2.0	32	87	3	92	39	18	14	28	1.90
472963--473087	43	2.9	43	77	11	139	52	7	1	39	1.39
472963--473099	44	3.1	44	75	13	138	53	6	2	37	1.39
473107--473162	27	2.1	27	93	6	96	41	5	3	50	1.43
473052--473201	82	1.8	81	87	4	221	52	4	2	42	1.31
473154--473736	53	11.7	51	71	18	340	52	5	2	39	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473052--473218	82	2.1	81	81	7	191	50	4	1	43	1.34
473293--473373	40	2.0	41	87	2	119	53	3	3	39	1.37
473175--473463	51	6.0	47	69	21	172	53	4	2	39	1.36
473369--473463	46	2.1	47	86	4	131	54	4	2	38	1.32
473369--473476	46	2.4	46	81	9	123	54	3	1	39	1.29
473415--473634	104	2.1	107	83	7	281	50	4	2	42	1.33
473590--473672	41	2.0	43	83	4	107	49	8	2	39	1.46
473138--473714	298	2.0	293	82	8	724	51	5	2	40	1.39
474104--474158	22	2.5	22	82	5	67	34	12	12	40	1.82
474280--474328	22	2.2	22	85	0	62	40	12	4	42	1.61
474609--474654	24	2.0	23	83	8	58	34	2	4	58	1.30
475154--475215	22	2.8	22	85	4	72	37	3	11	48	1.55
475341--475404	31	2.1	31	87	0	92	40	17	3	39	1.65
479943--479986	17	2.6	17	85	7	54	50	2	9	38	1.47
487783--487818	5	7.8	5	87	12	51	66	13	0	19	1.24
488605--488720	30	3.9	30	86	0	169	51	6	11	31	1.61
488605--488711	15	7.2	14	74	12	88	53	6	11	28	1.61
488597--488728	60	2.2	61	93	1	221	52	6	11	29	1.63
489697--489932	103	2.3	100	81	8	253	36	9	13	41	1.76
491950--492021	23	3.2	22	78	9	65	30	2	16	50	1.60
491950--492021	22	3.2	23	76	5	67	30	2	16	50	1.60
494532--495510	108	9.3	104	72	10	472	38	8	13	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494532--495510	107	9.3	107	75	8	639	38	8	13	38	1.76
495133--495315	99	1.8	99	84	5	253	40	6	13	39	1.71
495286--495533	105	2.3	105	80	4	237	38	9	14	37	1.79
497181--497260	33	2.4	33	91	0	133	32	15	12	40	1.84
502851--502875	13	1.9	13	100	0	50	32	20	16	32	1.94
502994--503033	22	1.9	22	90	10	66	32	20	0	47	1.50
504970--504998	14	2.1	14	93	6	51	44	6	13	34	1.71
505392--505445	20	2.8	19	83	5	72	31	11	18	38	1.86
505474--505498	13	1.9	13	100	0	50	36	16	16	32	1.90
507573--507622	20	2.5	19	78	9	55	38	16	14	32	1.88
514140--514191	20	2.6	20	90	6	79	36	17	17	28	1.92
520124--520650	113	4.6	113	83	3	599	24	18	28	28	1.98
520195--520650	28	16.1	28	87	1	579	23	18	29	28	1.98
520136--520650	85	6.0	85	83	3	613	24	18	29	28	1.98
521856--521899	12	3.7	12	82	11	54	2	2	9	86	0.75
521856--521898	14	3.2	13	84	15	52	2	2	6	88	0.68
521850--521899	21	2.4	21	83	6	57	4	4	8	84	0.87
531383--531422	19	2.1	19	90	0	62	70	7	12	10	1.35
535624--535678	20	2.8	20	88	0	83	40	14	12	32	1.84
538721--538787	35	2.0	33	85	11	91	40	4	0	55	1.20
546999--547030	3	10.7	3	93	0	55	28	34	0	37	1.57
547456--547511	20	2.8	20	88	0	85	26	23	8	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547474--547517	20	2.2	20	87	0	61	27	20	11	40	1.86
549862--550143	79	3.6	78	74	7	221	28	25	13	32	1.94
549869--550096	78	2.9	79	78	5	212	29	25	10	34	1.90
550101--550169	28	2.5	28	86	9	88	26	23	20	30	1.98
550029--550250	107	2.1	107	86	1	302	29	25	12	32	1.92
549946--550334	186	2.1	185	80	9	445	28	24	13	33	1.93
550130--550563	79	5.5	80	78	7	397	29	23	11	35	1.91
549865--550410	265	2.1	263	80	7	606	29	24	12	33	1.92
550131--550585	158	2.9	155	78	7	443	29	22	11	36	1.89
553198--553231	3	11.3	3	93	0	59	35	0	35	29	1.58
560319--560372	20	2.7	19	83	11	65	31	16	18	33	1.93
564725--565342	79	7.8	78	76	9	405	27	24	13	34	1.93
564725--565273	158	3.5	157	76	9	483	27	25	13	33	1.93
564725--565345	317	2.0	316	80	8	699	27	24	13	34	1.93
565218--565386	80	2.1	80	89	0	266	27	20	13	39	1.89
573707--573908	39	5.3	39	82	4	268	23	27	8	40	1.83
573731--573919	37	5.0	38	82	5	256	22	27	8	40	1.84
573707--573919	76	2.8	76	98	0	408	23	28	8	39	1.84
575257--576203	61	15.4	61	82	5	908	25	24	18	30	1.98
575257--576203	185	5.1	183	80	6	891	25	24	18	30	1.98
576186--576701	44	12.4	43	72	12	321	22	25	11	40	1.87
576226--576583	87	4.2	84	73	16	260	24	25	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576204--576532	123	2.6	124	82	6	351	23	24	9	42	1.83
576258--576562	86	3.6	85	74	15	260	22	25	9	42	1.83
579696--580148	80	5.7	79	78	5	362	27	24	12	35	1.91
579795--580149	160	2.3	155	83	2	413	27	22	12	37	1.90
580106--580177	28	2.6	28	80	6	92	30	27	12	29	1.93
580105--580342	107	2.2	107	96	0	440	27	25	12	34	1.92
580213--580284	28	2.6	28	84	6	92	30	26	12	30	1.93
581441--581502	33	1.9	33	90	3	99	40	12	14	32	1.84
592145--592240	30	3.6	29	69	26	93	27	15	14	42	1.86
592128--592258	50	2.6	50	93	1	219	27	16	12	42	1.85
592128--592318	50	3.8	50	84	4	208	27	15	13	43	1.84
594668--595169	79	6.4	79	83	4	500	30	23	11	34	1.91
594798--594856	28	2.0	28	87	9	82	32	25	6	35	1.82
594667--595118	235	1.9	237	85	3	617	30	23	12	34	1.91
601412--601443	6	5.7	6	85	14	50	28	0	0	71	0.86
601412--601442	16	1.9	16	100	0	62	29	0	0	70	0.87
601989--602032	22	2.0	22	81	0	52	54	0	0	45	0.99
602315--602770	149	3.0	150	95	2	801	25	13	15	45	1.83
613135--613299	85	2.0	83	89	4	251	41	3	14	41	1.61
613490--613591	32	3.4	31	79	14	115	48	1	0	49	1.19
613490--613571	16	5.2	16	69	7	69	47	1	1	50	1.16
614027--614072	21	2.2	21	92	0	74	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614217--614261	18	2.6	18	82	10	58	42	0	0	57	0.98
614741--614783	18	2.5	17	92	3	68	41	0	0	58	0.98
616673--616751	21	3.8	21	70	9	63	35	15	12	36	1.85
617413--617446	12	2.8	12	90	4	50	79	0	8	11	0.94
617975--618000	2	13.0	2	100	0	52	50	0	0	50	1.00
618937--619020	36	2.3	38	83	6	111	60	2	4	32	1.30
621603--621727	62	2.0	62	81	4	144	55	5	4	35	1.42
623310--623347	20	1.9	20	94	0	67	26	7	10	55	1.61
627873--627916	22	2.0	22	82	8	54	50	0	6	43	1.29
633421--633484	24	2.6	24	76	11	67	39	1	1	57	1.17

Tables:   1   2   3   4   5   6   7   8   9