genome.fa.s150.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold150
Parameters: 2 7 7 80 10 50 1000
Length:  1465027

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987045--987469	79	5.4	79	82	4	473	28	24	12	34	1.91
991728--991786	13	4.1	13	73	23	55	35	11	16	35	1.86
991708--991784	32	2.4	33	95	2	138	35	11	18	35	1.87
991805--992111	52	5.9	52	95	0	542	36	18	17	28	1.93
995821--995868	19	2.5	20	83	16	66	77	4	10	8	1.12
997094--997718	62	10.2	62	85	4	750	23	25	20	31	1.98
1004977--1005048	20	3.6	20	84	3	92	37	12	13	36	1.83
1006165--1006714	28	19.5	28	81	4	552	24	16	29	29	1.97
1006236--1006714	142	3.4	141	82	3	468	24	16	29	29	1.97
1006961--1007017	26	2.2	26	80	0	60	28	7	26	38	1.82
1013681--1013715	2	17.5	2	93	0	61	51	2	0	45	1.16
1023592--1023618	14	1.9	14	100	0	54	48	7	14	29	1.71
1024387--1024495	51	2.1	52	83	5	132	47	10	12	29	1.74
1030627--1030714	44	2.0	44	100	0	176	34	13	18	34	1.90
1030792--1030892	34	3.0	34	80	9	118	41	1	1	54	1.23
1030809--1030892	17	5.1	17	71	11	66	44	1	2	52	1.21
1030847--1030895	16	3.1	15	74	8	53	48	0	0	51	1.00
1030847--1030918	11	6.5	11	71	19	60	45	0	0	54	0.99
1030851--1030935	39	2.1	41	85	10	113	44	0	1	54	1.07
1030862--1030944	39	2.2	38	82	6	96	43	0	3	53	1.18
1034116--1034154	2	19.5	2	94	0	69	53	0	0	46	1.00
1034390--1034423	16	2.1	16	88	0	50	70	5	8	14	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034846--1034896	14	3.6	14	82	7	59	1	1	19	76	0.98
1036465--1036496	17	1.9	17	93	6	57	71	0	0	28	0.86
1037020--1037067	12	3.9	13	91	5	57	27	2	0	70	0.98
1037034--1037069	3	12.0	3	100	0	72	33	0	0	66	0.92
1040859--1040897	10	4.2	9	87	12	53	87	12	0	0	0.55
1040862--1040897	17	2.1	17	89	0	54	88	11	0	0	0.50
1040897--1040921	2	12.5	2	100	0	50	52	0	48	0	1.00
1042139--1042173	11	3.3	11	88	4	54	17	2	0	80	0.84
1042925--1042962	11	3.2	12	85	14	51	44	0	2	52	1.14
1045662--1045728	35	1.9	35	85	8	93	41	5	2	49	1.42
1046858--1046905	22	2.1	23	85	14	64	43	0	0	56	0.99
1047234--1047294	31	1.9	33	86	6	90	57	0	4	37	1.20
1047234--1047288	16	3.5	16	71	14	51	58	0	3	38	1.16
1054674--1054809	34	4.0	34	99	0	263	19	0	38	41	1.52
1054776--1054831	22	2.5	22	97	0	103	19	0	41	39	1.52
1054677--1054860	68	2.9	66	89	9	244	20	0	38	40	1.53
1159239--1159294	16	3.6	16	72	13	53	58	0	3	37	1.15
1167613--1167714	52	2.0	52	84	3	134	36	5	13	44	1.69
1167688--1167744	25	2.3	25	85	8	80	21	3	17	57	1.54
1168472--1168517	17	2.8	16	87	6	58	32	17	6	43	1.75
1168678--1168723	21	2.2	21	85	11	60	32	13	2	52	1.52
1169167--1169258	46	2.0	46	87	4	132	32	13	17	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181703--1181751	21	2.2	21	82	13	55	61	0	2	36	1.08
1181721--1181754	11	3.2	11	87	4	52	61	0	0	38	0.96
1187217--1187250	16	2.1	16	94	0	59	2	20	29	47	1.65
1187267--1187320	16	3.4	16	84	0	63	7	7	33	51	1.58
1192297--1192425	52	2.5	51	87	3	186	31	17	17	33	1.93
1192297--1192445	52	2.9	50	83	6	183	32	17	17	32	1.93
1192434--1192458	13	1.9	13	100	0	50	36	16	16	32	1.90
1192522--1192546	13	1.9	13	100	0	50	32	16	16	36	1.90
1194693--1194750	21	2.8	21	78	5	64	37	15	13	32	1.87
1194785--1194836	18	2.8	18	94	2	86	36	11	13	38	1.81
1194787--1194869	19	4.8	19	72	23	85	38	12	13	36	1.82
1194807--1194866	30	2.0	30	96	0	111	38	13	15	33	1.86
1194909--1194934	13	2.0	13	100	0	52	30	15	15	38	1.88
1194891--1194955	34	1.9	33	90	3	103	26	16	12	44	1.83
1197291--1197423	51	2.6	52	79	7	153	30	24	11	33	1.91
1197357--1197613	79	3.2	79	80	3	230	26	29	15	28	1.96
1204539--1204620	28	2.9	28	80	7	96	26	17	31	24	1.97
1204603--1204773	51	3.3	51	79	4	198	32	11	26	29	1.92
1204756--1204831	27	2.8	28	88	6	102	21	21	34	23	1.97
1207293--1207318	13	2.0	13	100	0	52	38	15	15	30	1.88
1207272--1207338	33	2.0	33	88	0	98	43	16	14	25	1.86
1207358--1207425	19	3.9	18	76	23	83	38	14	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1207380--1207404	13	1.9	13	100	0	50	32	16	16	36	1.90
1207361--1207423	32	2.0	32	96	0	117	36	15	12	34	1.86
1207479--1207519	5	8.2	5	88	0	55	14	0	0	85	0.60
1207479--1207519	15	2.7	15	88	0	64	14	0	0	85	0.60
1214149--1214206	1	58.0	1	75	0	53	87	8	3	0	0.64
1214151--1214198	16	2.9	17	87	9	73	87	10	2	0	0.62
1214149--1214206	27	2.1	27	87	6	82	87	8	3	0	0.64
1214159--1214198	8	4.9	8	90	6	62	87	10	2	0	0.63
1215166--1216032	175	5.1	173	84	8	902	26	29	20	23	1.99
1215231--1216032	55	14.2	55	81	11	799	27	29	20	22	1.99
1216708--1216747	21	1.9	21	100	0	80	32	10	17	40	1.83
1216809--1216877	19	4.0	18	71	22	67	37	13	13	36	1.83
1216812--1216874	32	2.0	32	90	0	99	36	14	14	34	1.86
1216917--1216942	13	2.0	13	100	0	52	30	15	15	38	1.88
1219306--1219428	51	2.4	52	84	5	160	31	23	11	33	1.90
1219306--1219428	53	2.4	51	84	5	158	31	23	11	33	1.90
1219412--1219487	28	2.7	28	85	0	98	22	35	19	22	1.96
1224185--1224225	2	20.5	2	100	0	82	51	0	0	48	1.00
1225923--1226042	40	2.9	39	71	11	98	42	19	9	29	1.82
1226051--1226283	117	2.0	117	89	1	360	40	15	12	31	1.84
1226885--1226927	21	2.0	21	90	0	68	37	11	2	48	1.52
1227711--1227748	15	2.5	15	95	0	67	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228499--1228551	17	3.1	18	78	10	58	60	0	0	39	0.97
1229075--1229099	13	1.9	13	100	0	50	32	16	16	36	1.90
1229087--1229139	20	2.6	21	82	8	65	37	16	16	28	1.91
1229170--1229221	20	2.7	20	91	8	81	38	17	15	28	1.90
1235126--1235156	8	3.8	8	95	4	53	12	0	25	61	1.32
1235354--1235391	13	2.9	13	96	0	67	31	15	18	34	1.92
1235388--1235450	31	2.0	31	100	0	126	31	19	19	30	1.96
1236903--1236927	13	1.9	13	100	0	50	36	16	16	32	1.90
1236883--1236949	33	2.0	33	88	0	98	32	11	14	40	1.83
1236990--1237014	13	1.9	13	100	0	50	32	16	16	36	1.90
1237023--1237151	52	2.5	52	92	0	213	34	17	17	31	1.92
1241487--1241560	20	3.7	20	78	10	62	39	17	16	27	1.91
1241610--1241635	13	2.0	13	100	0	52	30	15	15	38	1.88
1241590--1241656	33	2.1	32	91	8	109	35	16	14	32	1.90
1245440--1245482	21	2.0	21	95	0	77	39	13	0	46	1.44
1246157--1246252	48	2.0	48	100	0	192	31	8	12	47	1.71
1246863--1246893	15	2.0	16	93	6	55	70	0	6	22	1.09
1247284--1247317	15	2.3	15	89	0	50	47	0	2	50	1.16
1247621--1247693	34	2.1	35	85	7	96	50	5	0	43	1.25
1247761--1247793	14	2.2	16	89	10	52	75	6	6	12	1.16
1246825--1248599	913	1.9	908	88	3	2669	40	10	11	37	1.76
1248534--1248601	35	1.9	35	88	5	102	47	10	0	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249249--1249288	16	2.5	16	83	0	53	25	7	10	57	1.57
1256805--1256950	50	2.9	51	92	2	249	43	10	18	27	1.83
1256879--1256953	20	3.0	24	74	25	68	42	10	17	29	1.83
1258082--1258144	19	3.7	17	76	24	62	33	14	15	36	1.88
1258101--1258125	13	1.9	13	100	0	50	36	16	16	32	1.90
1258080--1258152	32	2.3	32	95	0	128	34	13	16	35	1.88
1258196--1258221	13	2.0	13	100	0	52	30	15	15	38	1.88
1258176--1258242	34	2.0	33	88	2	98	25	17	13	43	1.86
1258260--1258315	20	2.8	20	97	0	103	33	17	10	37	1.85
1260611--1260885	52	5.2	52	66	11	166	28	27	13	31	1.94

Tables:   1   2   3   4   5   6   7   8   9