genome.fa.s150.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold150
Parameters: 2 7 7 80 10 50 1000
Length:  1465027

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634065--634243	81	2.2	81	86	5	247	37	24	15	22	1.92
634065--634265	81	2.5	81	78	11	191	39	24	14	20	1.91
635019--635108	25	3.5	24	78	14	81	40	1	1	57	1.13
635031--635163	30	4.7	28	76	13	130	41	0	2	56	1.12
635030--635160	29	4.7	28	73	12	117	41	0	2	55	1.12
635030--635137	54	2.0	54	85	5	146	40	0	1	57	1.09
635007--635163	29	5.4	29	74	17	116	40	0	1	57	1.14
635007--635182	30	6.1	28	72	19	114	40	0	2	56	1.16
635213--635380	29	5.4	29	67	20	83	39	3	2	54	1.31
635180--635292	35	3.2	34	73	12	93	39	3	5	51	1.42
636229--636299	28	2.6	28	76	10	69	26	1	8	63	1.31
637096--637125	5	6.0	5	100	0	60	40	0	0	60	0.97
641980--642014	2	17.5	2	100	0	70	48	0	0	51	1.00
647973--648182	97	2.2	97	91	1	332	30	12	27	29	1.93
648801--649220	86	4.9	84	81	4	412	23	16	28	31	1.96
648801--649220	28	14.8	28	83	4	421	23	16	28	31	1.96
650469--650556	7	11.9	7	79	17	90	1	2	14	81	0.84
650469--650565	8	12.8	8	78	6	87	2	2	13	82	0.85
650469--650564	15	6.4	15	77	13	99	2	2	13	82	0.85
661912--661940	10	2.7	11	94	5	51	51	0	13	34	1.42
661833--662088	131	2.0	130	98	0	494	44	10	12	32	1.75
662043--662071	10	2.7	11	94	5	51	51	0	13	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663752--663826	20	3.8	19	82	3	78	42	13	12	32	1.80
663753--663894	40	3.8	38	71	17	118	43	12	12	30	1.80
663770--663908	71	2.0	71	88	0	206	44	12	12	30	1.78
663841--663894	20	2.7	20	82	0	72	46	9	11	33	1.71
668262--668296	2	17.0	2	88	5	52	45	0	5	48	1.26
670434--670477	2	22.0	2	95	0	79	47	0	2	50	1.13
671612--671646	14	2.5	15	86	13	56	51	14	0	34	1.42
672401--672430	13	2.3	13	88	0	51	30	0	0	70	0.88
672943--672979	18	2.0	19	89	5	58	78	0	18	2	0.87
673606--673647	14	3.1	14	83	6	52	2	19	0	78	0.86
673798--673828	2	15.5	2	100	0	62	51	0	0	48	1.00
674453--674485	2	16.5	2	100	0	66	48	0	0	51	1.00
680123--680168	14	3.4	13	82	8	56	63	0	0	36	0.95
680150--680248	12	8.6	11	70	14	58	64	1	2	32	1.11
680179--680236	20	2.9	19	84	5	80	68	1	0	29	0.99
680179--680241	29	2.3	27	79	17	67	69	1	0	28	0.97
680199--680256	8	7.1	8	82	9	64	65	0	0	34	0.93
680179--680256	40	2.0	39	85	7	104	66	1	0	32	1.00
680197--680276	32	2.5	33	80	11	96	65	0	0	35	0.93
680181--680279	16	5.8	16	72	23	51	65	1	0	33	0.99
680976--681020	22	2.0	23	83	12	58	51	2	0	46	1.13
681272--681350	11	7.5	11	73	22	71	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681272--681341	5	13.6	5	76	16	54	34	0	0	65	0.93
681271--681341	27	2.5	30	86	8	105	35	0	0	64	0.94
681271--681370	19	5.0	19	74	19	64	36	1	0	63	1.02
681461--681506	17	2.5	19	79	10	51	67	0	8	23	1.18
682167--682212	10	4.5	10	84	13	58	65	0	0	34	0.93
682150--682212	5	12.8	5	74	15	51	60	0	1	38	1.07
682148--682212	24	2.7	24	79	9	69	60	0	1	38	1.07
683108--683158	25	2.0	26	88	3	77	50	0	0	49	1.00
683193--683250	26	2.2	26	84	6	73	31	5	1	62	1.27
683295--683333	20	2.0	20	94	0	69	48	5	20	25	1.70
689914--689943	2	15.0	2	100	0	60	50	0	50	0	1.00
690557--690614	27	2.1	28	83	3	73	46	1	13	37	1.54
695040--695145	24	4.3	25	66	23	71	60	12	0	27	1.32
696512--696543	15	2.1	15	100	0	64	15	6	25	53	1.65
697247--697299	27	2.1	24	83	13	63	45	11	1	41	1.51
697316--697356	16	2.6	16	82	14	50	48	2	0	48	1.14
699019--699044	13	2.0	13	100	0	52	38	15	15	30	1.88
699001--699064	32	2.0	33	90	3	103	42	15	14	28	1.86
703384--703430	24	2.0	24	100	0	94	48	25	4	21	1.68
705749--705800	26	2.0	26	100	0	104	38	7	11	42	1.70
708355--708392	16	2.4	16	91	4	60	68	0	0	31	0.90
709898--710020	50	2.5	50	85	5	151	33	17	12	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710090--710201	50	2.2	50	84	3	145	21	14	17	46	1.84
710298--710339	18	2.4	17	81	14	50	57	0	0	42	0.99
711243--711304	28	2.2	29	85	8	83	46	0	1	51	1.10
711982--712017	19	1.9	18	88	5	54	63	0	0	36	0.94
715160--715349	94	2.0	93	94	1	335	23	19	19	37	1.94
721207--721267	28	2.1	30	87	6	90	18	6	32	42	1.76
722002--722036	18	2.0	17	94	5	61	80	0	0	20	0.72
724084--724149	18	3.7	18	80	9	82	27	42	1	28	1.64
724606--724632	13	2.1	13	100	0	54	29	0	0	70	0.88
728878--728929	14	3.6	14	82	10	52	34	1	1	61	1.18
733393--733418	12	2.2	12	100	0	52	15	19	7	57	1.62
735597--735678	27	3.0	27	94	0	146	26	34	8	30	1.86
739284--739346	6	10.8	6	76	6	58	36	1	12	49	1.51
739290--739358	28	2.5	28	85	0	84	33	1	17	47	1.56
739389--739425	2	18.5	2	100	0	74	51	0	48	0	1.00
739425--739455	2	15.5	2	100	0	62	51	48	0	0	1.00
744931--744981	14	3.4	14	73	26	50	52	0	1	45	1.12
744909--744986	33	2.4	31	83	14	95	51	0	2	46	1.14
751295--751320	13	2.0	13	100	0	52	30	23	15	30	1.95
751432--751462	10	3.1	10	90	0	53	41	6	29	22	1.78
751486--751622	53	2.6	53	95	1	238	27	16	18	37	1.92
751592--751662	20	3.5	20	77	11	74	29	12	16	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751702--751742	21	2.0	21	85	9	57	39	9	12	39	1.76
753399--753696	164	1.8	164	82	1	391	32	10	8	48	1.67
754206--754271	23	3.0	22	74	22	66	66	0	25	7	1.18
754210--754274	12	5.7	12	77	14	66	67	0	24	7	1.16
754687--754715	12	2.3	13	94	5	51	6	10	13	68	1.37
757498--757538	10	4.1	10	87	0	64	24	26	7	41	1.81
757516--757622	52	2.1	52	96	0	196	28	16	14	39	1.89
761115--761170	25	2.3	25	90	9	89	25	0	3	71	1.02
761141--761174	17	2.1	15	89	10	50	35	0	2	61	1.11
761260--761879	156	4.0	156	81	2	665	39	18	15	26	1.90
762002--762321	166	1.9	166	81	3	385	42	13	11	32	1.80
763655--764117	154	3.0	149	80	8	522	48	7	9	33	1.65
767298--767526	114	2.0	114	98	0	440	37	13	12	36	1.82
769009--769049	21	2.0	21	85	4	57	39	19	21	19	1.93
770078--770129	21	2.5	21	96	0	95	42	23	5	28	1.77
770008--770209	112	1.8	112	91	2	334	37	19	10	32	1.86
770216--770261	20	2.2	21	84	3	58	34	17	8	39	1.80
770008--770262	112	2.3	111	85	4	316	36	18	10	34	1.86
771271--771328	28	2.1	28	83	0	71	8	20	32	37	1.83
771404--771462	20	2.9	20	75	7	57	32	16	13	37	1.88
773207--773344	51	2.7	51	83	0	177	34	12	26	26	1.92
773329--773400	28	2.6	28	90	0	117	26	19	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773274--773477	107	1.9	107	89	0	318	30	14	28	26	1.95
773356--773530	79	2.2	79	90	2	271	30	13	28	28	1.94
773462--773578	51	2.3	51	80	7	157	30	8	29	30	1.87
773601--773861	79	3.3	78	84	6	339	33	10	26	28	1.90
777520--777558	14	2.9	14	82	17	55	66	0	0	33	0.92
777610--777638	15	1.9	15	100	0	58	34	6	17	41	1.76
782974--782998	13	1.9	13	100	0	50	32	16	16	36	1.90
786753--786778	13	2.0	13	100	0	52	30	23	15	30	1.95
786868--786920	22	2.4	22	100	0	106	37	13	22	26	1.91
786965--787101	53	2.6	53	95	1	247	27	17	18	37	1.93

Tables:   1   2   3   4   5   6   7   8   9