genome.fa.s150.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold150
Parameters: 2 7 7 80 10 50 1000
Length:  1465027

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260926--1260995	28	2.5	28	86	4	88	22	34	18	24	1.96
1260612--1261048	204	2.1	209	91	3	715	27	27	13	30	1.94
1260951--1261153	79	2.6	80	80	5	216	24	28	16	30	1.97
1263213--1263239	4	6.8	4	100	0	54	22	0	0	77	0.76
1269906--1270111	78	2.6	78	83	2	243	28	17	30	23	1.97
1270063--1270134	28	2.6	28	86	0	90	25	19	33	22	1.97
1270012--1270512	263	1.9	263	88	2	756	31	13	26	28	1.94
1270326--1270402	27	2.8	26	88	9	102	20	22	32	24	1.98
1270122--1270507	52	7.4	52	72	11	234	31	12	25	29	1.93
1272884--1272909	13	2.0	13	100	0	52	38	15	15	30	1.88
1272863--1272929	33	2.0	33	88	0	98	43	16	14	25	1.86
1272949--1273016	19	3.9	18	76	23	83	38	14	11	35	1.83
1272971--1272995	13	1.9	13	100	0	50	32	16	16	36	1.90
1272952--1273014	32	2.0	32	96	0	117	36	15	12	34	1.86
1273820--1273906	28	3.1	28	62	21	65	22	21	29	25	1.99
1273800--1274422	55	11.3	55	90	4	938	20	20	30	28	1.97
1275390--1275454	19	3.5	18	73	12	51	0	12	6	81	0.86
1283775--1283980	78	2.6	78	82	2	234	28	16	30	24	1.97
1283775--1283977	79	2.6	78	82	3	230	28	17	30	24	1.97
1283932--1284003	28	2.6	27	84	8	83	25	18	33	23	1.97
1284026--1284375	51	6.7	51	70	13	162	32	12	25	29	1.93
1283883--1284380	262	1.9	262	88	2	750	31	13	26	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284194--1284269	27	2.8	26	88	9	100	21	22	34	22	1.97
1283992--1284375	52	7.3	52	71	11	223	32	12	25	29	1.93
1286739--1286764	13	2.0	13	100	0	52	38	15	15	30	1.88
1286718--1286784	33	2.0	33	88	0	98	43	16	14	25	1.86
1286803--1286870	19	3.9	18	76	23	83	38	14	11	35	1.83
1286825--1286849	13	1.9	13	100	0	50	32	16	16	36	1.90
1286806--1286868	32	2.0	32	96	0	117	36	15	12	34	1.86
1287085--1287110	13	2.0	13	100	0	52	38	15	15	30	1.88
1287064--1287130	33	2.0	33	88	0	98	43	16	14	25	1.86
1287150--1287217	19	3.9	18	76	23	83	38	14	11	35	1.83
1287172--1287196	13	1.9	13	100	0	50	32	16	16	36	1.90
1287153--1287215	32	2.0	32	96	0	117	36	15	12	34	1.86
1286707--1287366	347	1.9	346	99	0	1302	34	16	15	32	1.91
1292036--1292085	26	1.9	25	92	8	82	84	14	2	0	0.72
1292048--1292111	11	5.2	12	76	14	60	79	14	6	0	0.91
1292038--1292083	23	1.9	25	91	8	78	82	15	2	0	0.76
1292035--1292104	15	4.9	13	77	22	70	80	15	4	0	0.87
1293070--1293895	55	14.4	54	81	11	825	27	26	19	26	1.99
1293070--1293895	116	7.2	111	83	10	835	27	26	19	26	1.99
1293069--1293894	171	4.8	172	87	5	1067	27	26	19	26	1.99
1293625--1293822	28	7.2	29	61	20	93	28	29	19	21	1.98
1293987--1294083	42	2.3	42	77	8	101	16	28	12	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1294656--1294713	21	2.8	21	81	5	73	36	15	15	32	1.89
1294745--1294834	19	5.1	18	71	22	75	35	12	15	36	1.85
1294791--1294815	13	1.9	13	100	0	50	36	16	16	32	1.90
1294770--1294842	32	2.3	32	97	0	137	34	12	17	35	1.88
1294866--1294932	34	2.0	33	85	2	89	26	14	11	46	1.80
1297278--1297577	52	5.7	51	70	12	207	28	28	12	31	1.93
1297443--1297617	52	3.4	51	81	6	176	29	27	12	30	1.92
1297279--1297722	211	2.1	211	94	1	766	28	28	13	29	1.94
1297630--1297859	79	2.9	79	77	4	248	26	29	13	30	1.94
1299806--1299867	13	4.4	13	73	16	52	38	3	3	54	1.32
1303445--1303553	42	2.7	40	87	8	166	42	15	10	32	1.80
1313532--1313566	3	11.7	3	87	0	52	25	0	5	68	1.11
1313535--1313571	12	3.1	12	96	0	65	21	0	8	70	1.13
1313594--1314006	143	3.0	135	91	3	632	31	13	22	31	1.93
1317026--1317051	3	8.7	3	100	0	52	34	0	0	65	0.93
1321530--1321581	21	2.5	21	96	0	95	28	19	3	48	1.66
1321908--1321934	13	2.1	13	100	0	54	29	14	14	40	1.86
1321920--1321957	20	1.9	20	100	0	76	39	13	15	31	1.86
1321985--1322049	33	2.0	32	88	11	96	33	15	18	32	1.92
1322005--1322029	13	1.9	13	100	0	50	36	16	16	32	1.90
1328333--1328382	21	2.4	22	83	9	61	32	20	0	48	1.50
1330745--1330770	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332276--1332366	20	4.6	20	71	13	64	31	16	13	38	1.87
1332396--1332441	20	2.3	20	85	7	58	36	10	17	34	1.85
1336086--1336215	19	7.9	17	67	29	86	32	12	20	35	1.89
1336088--1336222	32	4.2	32	96	0	234	31	12	20	34	1.90
1336107--1336195	13	5.9	13	68	27	52	32	13	20	33	1.91
1336300--1336428	52	2.5	52	92	0	222	34	17	18	30	1.94
1346746--1347243	61	8.5	60	73	11	295	38	14	24	23	1.92
1346867--1347429	113	4.9	111	72	14	403	38	15	22	23	1.92
1347037--1347311	61	4.6	60	75	6	196	37	14	24	24	1.92
1347427--1347876	31	14.1	31	76	9	388	21	18	31	29	1.96
1347427--1347876	63	7.0	63	79	6	476	21	18	31	29	1.96
1347920--1348016	33	3.1	32	84	8	119	38	15	24	21	1.92
1348764--1348822	29	2.1	28	81	9	68	40	10	15	33	1.81
1349269--1349379	52	2.2	51	80	8	118	5	9	9	74	1.20
1351053--1351278	79	2.9	78	79	6	231	31	14	26	26	1.95
1351156--1351355	107	1.9	108	84	3	269	29	15	28	27	1.96
1351230--1351306	28	2.8	28	85	0	91	22	19	35	23	1.96
1351290--1351461	52	3.3	51	82	2	173	31	11	26	30	1.92
1351323--1351461	51	2.7	52	84	3	156	33	12	25	28	1.92
1351259--1351598	183	1.9	183	95	0	617	31	12	27	28	1.92
1352370--1352409	19	2.1	19	100	0	80	37	10	40	12	1.77
1357605--1357630	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357585--1357648	32	2.0	33	90	3	103	28	14	15	42	1.86
1359998--1361290	55	22.5	55	82	10	1338	26	27	19	25	1.99
1359998--1361290	400	3.2	399	89	5	1844	26	27	19	25	1.99
1362028--1362089	19	3.2	19	73	13	63	43	14	14	27	1.84
1362077--1362101	13	1.9	13	100	0	50	36	16	16	32	1.90
1362056--1362128	32	2.3	32	97	0	137	35	12	16	35	1.86
1362058--1362120	19	3.7	18	76	24	73	34	12	15	36	1.86
1362145--1362186	21	2.0	21	100	0	84	42	9	19	28	1.82
1362173--1362198	13	2.0	13	100	0	52	30	15	15	38	1.88
1364672--1364891	78	2.8	79	78	5	239	27	27	12	32	1.93
1375368--1375561	79	2.4	78	82	5	228	31	17	26	24	1.97
1375514--1375585	28	2.6	27	86	8	92	23	20	33	22	1.97
1375443--1375639	107	1.8	108	82	5	256	29	15	27	26	1.96
1385340--1385561	79	2.8	79	82	4	252	30	14	28	26	1.95
1385517--1385587	28	2.6	27	86	6	90	22	18	36	22	1.95
1385575--1385962	52	7.5	52	72	8	279	31	11	27	29	1.92
1385575--1385795	51	4.3	51	85	5	266	31	12	26	29	1.92
1385778--1385849	28	2.5	30	80	13	89	22	16	36	25	1.94
1385466--1385957	260	1.9	261	94	2	864	30	12	28	28	1.93
1388301--1388357	21	2.8	21	91	2	89	45	12	17	24	1.83
1405668--1405717	16	3.1	16	88	0	73	54	4	2	40	1.31
1411095--1411147	19	2.7	20	85	2	72	35	16	16	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1413528--1413577	21	2.4	21	83	9	59	48	0	20	32	1.50
1413535--1413577	21	2.0	22	86	4	61	51	0	20	27	1.48
1419816--1419915	43	2.3	43	96	0	191	32	15	22	31	1.94
1419901--1419973	20	3.7	19	83	7	76	39	17	15	27	1.90
1420265--1420291	13	2.1	13	100	0	54	29	14	14	40	1.86
1420275--1420331	19	2.9	19	89	2	87	31	17	15	35	1.92
1422598--1422642	20	2.3	20	96	3	83	66	0	20	13	1.24
1427708--1427766	13	4.9	13	71	26	58	35	11	16	35	1.86
1427814--1427871	13	3.9	13	73	26	53	32	17	13	36	1.89
1427792--1427891	33	3.0	33	94	0	164	38	16	12	34	1.85

Tables:   1   2   3   4   5   6   7   8   9