genome.fa.s169.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370168--1370197	14	2.1	14	93	0	51	70	6	0	23	1.11
1370943--1370996	18	3.1	17	81	7	63	33	0	0	66	0.92
1370931--1370996	5	14.0	5	74	19	54	36	1	0	62	1.05
1370942--1371005	13	5.0	13	81	7	60	35	0	0	64	0.94
1372234--1372281	23	2.0	25	84	8	64	52	0	0	47	1.00
1373808--1373857	15	3.3	15	81	13	57	66	2	0	32	1.03
1374477--1374530	3	18.0	3	100	0	108	66	0	0	33	0.92
1376546--1376574	11	2.6	11	100	0	58	55	0	6	37	1.27
1376533--1376640	54	1.9	57	90	9	177	42	1	12	43	1.52
1377400--1377430	15	2.0	16	93	6	55	51	3	0	45	1.17
1377462--1377486	13	1.9	13	100	0	50	36	8	0	56	1.29
1377630--1377674	22	2.1	22	84	12	58	42	4	0	53	1.21
1382959--1383003	22	2.0	22	91	0	72	15	4	13	66	1.39
1390025--1390068	14	3.0	14	80	9	52	61	0	0	38	0.96
1390025--1390072	15	3.2	15	81	0	60	62	0	0	37	0.95
1393550--1393854	157	1.9	157	86	3	436	32	13	26	27	1.93
1393788--1393906	51	2.3	51	85	2	168	31	10	27	30	1.91
1393550--1393855	78	3.9	79	84	4	395	32	13	26	27	1.94
1393841--1394045	79	2.6	79	80	3	234	35	12	24	26	1.92
1393717--1393972	130	2.0	129	85	2	352	33	12	25	28	1.92
1393630--1394045	209	2.0	207	82	5	507	34	12	25	27	1.92
1398647--1398678	16	2.0	16	100	0	64	31	25	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400964--1400998	3	11.7	3	93	0	61	34	0	31	34	1.58
1403294--1403388	43	2.2	43	85	5	122	31	16	18	32	1.94
1404086--1404150	33	2.0	33	93	0	112	10	26	0	63	1.27
1405383--1405428	16	2.9	17	78	12	53	63	21	6	8	1.46
1406425--1406479	27	2.0	27	82	6	67	61	12	3	21	1.46
1406582--1406619	20	1.9	19	89	5	58	52	0	2	44	1.14
1407397--1407429	17	1.9	17	93	0	57	36	0	0	63	0.95
1407388--1407453	28	2.4	28	87	10	91	33	1	1	63	1.13
1409928--1409956	3	9.7	3	100	0	58	68	0	0	31	0.89
1411351--1411399	23	2.1	23	85	7	64	59	0	0	40	0.98
1411373--1411416	14	3.0	14	87	9	61	63	0	0	36	0.95
1411373--1411420	15	3.2	15	87	0	69	64	0	0	35	0.94
1411592--1411644	26	2.1	25	82	10	63	60	0	1	37	1.08
1412376--1412444	19	3.8	18	80	7	77	24	7	2	65	1.32
1412391--1412435	17	2.6	17	86	10	56	22	4	4	68	1.25
1412708--1412738	15	2.1	15	93	0	53	51	0	0	48	1.00
1415368--1415408	3	13.7	3	100	0	82	34	0	0	65	0.93
1423234--1423274	3	13.7	3	100	0	82	31	0	0	68	0.90
1423430--1423466	2	18.5	2	100	0	74	48	0	0	51	1.00
1436674--1436710	6	6.2	6	87	0	56	16	21	32	29	1.95
1438149--1438207	2	30.0	2	96	3	111	50	0	0	49	1.00
1439209--1439337	21	6.7	19	70	22	67	59	0	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439225--1439356	5	26.4	5	67	22	55	60	1	0	37	1.06
1439206--1439307	38	2.7	39	80	13	115	61	0	0	36	1.09
1439238--1439301	17	3.9	17	76	19	73	64	1	0	34	1.03
1439222--1439293	9	8.2	9	72	18	55	63	1	0	34	1.03
1447769--1447821	27	2.0	27	81	7	63	43	1	1	52	1.23
1452222--1452303	31	2.6	33	83	9	91	52	0	0	47	1.00
1452975--1453007	2	16.5	2	100	0	66	51	0	0	48	1.00
1453913--1453966	21	2.6	21	91	5	83	59	0	0	40	0.98
1453913--1453982	21	3.4	21	82	9	63	55	2	0	41	1.14
1458212--1458252	20	2.0	20	85	0	55	46	0	0	53	1.00
1459158--1459187	11	2.8	11	95	5	53	73	0	0	26	0.84
1461984--1462028	17	2.5	19	82	7	58	48	8	4	37	1.55
1462729--1462757	2	14.5	2	100	0	58	0	0	48	51	1.00
1467340--1467385	18	2.6	18	77	16	51	58	0	0	41	0.98
1467335--1467395	27	2.4	25	81	10	63	59	0	1	39	1.08
1469940--1470007	5	13.2	5	73	17	59	61	0	0	38	0.96
1469940--1470012	27	2.7	27	81	10	78	61	0	0	38	0.96
1469938--1470053	11	10.0	11	72	22	78	57	0	0	41	1.04
1470668--1470739	38	1.9	36	91	5	117	43	13	8	34	1.75
1475881--1475920	20	2.0	21	90	5	64	60	5	0	35	1.19
1476840--1476878	10	3.8	10	86	6	51	74	0	0	25	0.82
1476840--1477012	18	9.7	18	68	15	74	63	0	1	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476841--1476913	23	3.5	21	70	14	62	68	0	2	28	1.03
1476952--1477101	30	5.1	28	73	13	108	61	0	1	37	1.05
1476956--1477103	11	13.9	11	72	16	84	60	0	1	37	1.05
1476996--1477122	6	21.2	6	65	25	56	59	1	1	37	1.16
1476970--1477130	89	1.9	88	81	12	201	59	1	1	37	1.13
1477385--1477422	17	2.1	18	85	9	51	57	0	0	42	0.98
1479201--1479247	20	2.5	18	77	12	58	36	19	14	29	1.92
1479208--1479248	20	2.0	20	100	0	82	29	19	17	34	1.94
1484870--1484905	17	2.1	17	89	0	54	0	16	0	83	0.65
1486148--1486749	32	18.8	32	94	0	956	15	19	34	30	1.93
1486732--1487796	27	39.0	27	91	2	1693	28	14	34	23	1.93
1486732--1487796	82	13.0	81	92	2	1693	28	14	34	23	1.93
1486732--1487796	109	9.8	108	92	2	1693	28	14	34	23	1.93
1495063--1495113	23	2.2	23	82	0	57	54	5	1	37	1.36
1495617--1495646	10	3.0	10	95	0	51	0	13	0	86	0.57
1495618--1495652	16	2.1	17	89	5	54	0	17	0	82	0.66
1497013--1497042	12	2.5	12	88	0	51	23	0	6	70	1.11
1497297--1497340	22	2.0	22	82	8	54	38	2	2	56	1.24
1497557--1497590	14	2.5	13	86	9	50	50	0	0	50	1.00
1497572--1497605	11	3.1	11	91	0	50	61	0	0	38	0.96
1497595--1497636	21	2.0	21	86	9	59	59	0	2	38	1.10
1497758--1497844	24	3.7	23	71	11	68	57	2	1	39	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1506170--1506238	13	5.2	13	69	10	50	46	0	1	52	1.09
1506173--1506256	40	2.1	40	95	0	132	48	1	1	48	1.16
1506941--1507087	72	2.0	72	94	0	258	14	46	14	25	1.82
1507916--1507950	19	1.9	17	88	11	52	68	5	0	25	1.11
1512123--1512175	24	2.2	24	83	12	65	35	0	0	64	0.94
1512653--1512701	22	2.2	21	78	7	53	32	2	0	65	1.04
1512735--1512773	20	2.0	20	85	10	53	25	2	2	69	1.14
1513761--1513795	2	18.5	2	88	11	56	45	0	0	54	0.99
1513763--1513846	12	7.5	11	74	20	59	38	3	7	51	1.47
1514267--1514311	23	2.0	23	82	8	56	48	0	4	46	1.22
1516723--1516763	21	1.9	21	85	5	55	60	2	2	34	1.23
1517229--1517277	23	2.0	25	81	14	59	42	0	0	57	0.99
1517209--1517306	35	2.9	34	75	13	85	44	0	2	53	1.12
1520768--1520793	9	2.9	9	100	0	52	23	0	42	34	1.54
1525332--1525409	37	2.1	37	90	0	120	32	23	17	26	1.97
1527431--1527492	23	2.8	22	79	11	56	45	0	0	54	0.99
1530818--1530874	18	3.0	20	73	14	59	36	0	0	63	0.95
1531065--1531142	22	3.6	22	75	11	72	56	1	0	42	1.07
1531069--1531123	11	5.0	11	70	16	51	60	1	0	38	1.08
1531268--1531406	60	2.3	60	83	3	163	51	5	3	39	1.43
1531324--1531479	76	2.1	75	92	1	258	51	7	6	35	1.55
1531745--1531774	15	1.9	16	93	6	53	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531755--1531802	21	2.3	20	79	10	51	52	0	2	45	1.12
1532110--1532149	20	2.0	20	85	0	53	37	0	0	62	0.95
1532408--1532450	16	2.8	15	77	19	52	46	4	0	48	1.22
1533120--1533158	17	2.2	19	86	13	57	38	2	5	53	1.37
1533179--1533219	2	21.0	2	85	5	57	48	4	0	46	1.23
1533236--1533284	24	2.0	25	84	4	64	51	4	0	44	1.20
1533370--1533407	2	19.0	2	88	0	58	44	2	0	52	1.14
1533364--1533407	14	3.1	14	90	0	61	45	4	0	50	1.22
1536082--1536118	17	2.1	19	85	10	51	43	0	2	54	1.14
1536477--1536523	18	2.6	18	81	18	62	8	4	4	82	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14